View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11475_high_6 (Length: 601)
Name: NF11475_high_6
Description: NF11475
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11475_high_6 |
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Alignment Details
Target: chr3 (Bit Score: 513; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 513; E-Value: 0
Query Start/End: Original strand, 8 - 584
Target Start/End: Original strand, 52688197 - 52688764
Alignment:
| Q |
8 |
aagcaaaggttatcgaatttaaaacttaagtcattttaaatgtgtgtaattatttggttatgatgatgccacttagtggttgccattatggatgaataac |
107 |
Q |
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| T |
52688197 |
aagcaaaggttagcgaatttaaaacttaagtcattttaaatgtgtgtaattatttggttatgatgatgccacttagtggttgccattatggatgaataac |
52688296 |
T |
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| Q |
108 |
tgccattttatatggcactagaggaatattgagactcccattggggatatcacacgtcagtattcatctttgaatgatattttgatcgtattgggacgtt |
207 |
Q |
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| T |
52688297 |
tgccattttatatggcactagaggaatattgagactcccattggggatatcacacgtcaatattcacctttgaatgatattttgatcgtattgggacgtt |
52688396 |
T |
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| Q |
208 |
acccgcaacacaaaggtgagaaacttggtgcatgttaacaaacaacaggatgaaactattaaagcttgaaaatttctagataattagtggattagattga |
307 |
Q |
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| T |
52688397 |
acccgcaacacaaaggtgagaaacttggtgcatgttaacaaacaacgggatgaaactattaaagcttggaaatttctagataattagtggattagattga |
52688496 |
T |
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| Q |
308 |
attctgaaggcacaattaaaggatgataaaaatatgcttgtggttgcttatttcgagatgagaatgggaggtggttgtgtggcttctccaaaaatttggg |
407 |
Q |
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| T |
52688497 |
attcttaa---------aaaggatgataaaaatatgcttgtggttgcttatttcaagatgagaatgggaggtggttgtgtggcttctccaaaaatttggg |
52688587 |
T |
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| Q |
408 |
tcattgtaacacatatgttgttgaattatggggagtttatgaaggtttgaaaattgattaagtttgaggttatacttgagttaagcttaatatggattct |
507 |
Q |
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| T |
52688588 |
tcattgtaacacatatgttgttgaattatgaggagtttatgaaggtttgaaaattgattaagtttgaggttatacttgagttaagcttaatatggattct |
52688687 |
T |
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| Q |
508 |
aaaattgttcttatattattaagagtgatggtatatggagtatgtatgtgtggaggttgaccaagaagattagaagg |
584 |
Q |
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| T |
52688688 |
aaaattgttcttatattattaagagtgatggtatatggagtatgtatgtgtggaggttgaccaagaagattagaagg |
52688764 |
T |
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