View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11475_high_9 (Length: 572)
Name: NF11475_high_9
Description: NF11475
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11475_high_9 |
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Alignment Details
Target: chr7 (Bit Score: 456; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 456; E-Value: 0
Query Start/End: Original strand, 17 - 480
Target Start/End: Original strand, 42929191 - 42929654
Alignment:
| Q |
17 |
agatgacactttcaaaaccattaactcagtttacttggacgcttctgaatccttctccactgtttctccaaactgtgattctagcttttcaaaagcttct |
116 |
Q |
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| T |
42929191 |
agatgacactttcaaaaccattaactcagtttacttggatgcttctgaatccttctccactgtttctccaaactgtgattctagcttttcaaaagcttct |
42929290 |
T |
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| Q |
117 |
aatgatcaagaatccaaacaagttgattcgatcgaaactgtgattcgtggattatcttctgatcggtttttctttgagccagatgagaccaactccattt |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
42929291 |
aatgatcaagaatccaaacaagttgattcgatcgaaactgtgattcgtggattatcttctgatcggtttttctttgagccagatgagaccaactccatct |
42929390 |
T |
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| Q |
217 |
tagaggttaataataaagctgctgcaattggaggtggtgaaactcaaagcttgccattcaaagatagtgtagttttatctatggaatctcgagatcctta |
316 |
Q |
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| T |
42929391 |
tagaggttaataataaagctgctgcaattggaggtggtgaaactcaaagcttgccattcaaagatagtgtagttttatctatggaatctcgagatcctta |
42929490 |
T |
|
| Q |
317 |
tgtcgattttcgaaagtctatggaggaaatagtagaagctcacgatgttaaagattgggaaggtcttcaagagcttttgagttggtatttgaaggtcaat |
416 |
Q |
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| T |
42929491 |
tgtcgattttcgaaagtctatggaggaaatagtagaagctcacgatgttaaagattgggaaggtcttcaagagcttttgagttggtatttgaaggtcaat |
42929590 |
T |
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| Q |
417 |
gagaaaatcaatcatggctatattgttggtgcttttgttgatttattggttggtcttacatttg |
480 |
Q |
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| T |
42929591 |
gagaaaatcaatcatggctatattgttggtgcttttgttgatttattggttggtcttacatttg |
42929654 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 47; Significance: 1e-17; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 366 - 460
Target Start/End: Complemental strand, 50463383 - 50463289
Alignment:
| Q |
366 |
aaagattgggaaggtcttcaagagcttttgagttggtatttgaaggtcaatgagaaaatcaatcatggctatattgttggtgcttttgttgattt |
460 |
Q |
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||||||||||| ||| | ||||||||||||||||||||||||| || |||| |||| |||||||| | |||||||||||||||||||||||| |
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| T |
50463383 |
aaagattgggatggtttggaagagcttttgagttggtatttgaaagttaatggtaaaaataatcatgggtttattgttggtgcttttgttgattt |
50463289 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 388 - 463
Target Start/End: Complemental strand, 25531099 - 25531024
Alignment:
| Q |
388 |
agcttttgagttggtatttgaaggtcaatgagaaaatcaatcatggctatattgttggtgcttttgttgatttatt |
463 |
Q |
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| T |
25531099 |
agcttttgagttggtattttgaagttaatgagaaaagaaatcatggatttattattgatgctttttttgatttatt |
25531024 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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