View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11475_low_14 (Length: 481)
Name: NF11475_low_14
Description: NF11475
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11475_low_14 |
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| [»] chr4 (4 HSPs) |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 332; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 18 - 481
Target Start/End: Original strand, 31676441 - 31676906
Alignment:
| Q |
18 |
catggtcctctctaattgaccttctacatcaggtttcacttcnnnnnnnn---gtccactgccccatacaatgtaattacatttatgcacttctgtataa |
114 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||| |||||||||||||||||||||||||||| |
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| T |
31676441 |
catggtcctctctaattgaccttctacatcaggtttcacttttttttttttttgtccatggccccatacaaggtaattacatttatgcacttctgtataa |
31676540 |
T |
|
| Q |
115 |
tccctaggctaagaatcattttcctcctctctccatttctctttgttaatcgctacaggctccttccttcttcctctatctcatcttcaccttcacccat |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| | |
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|
| T |
31676541 |
tccctaggctaagaatcattttcctcctctctccatttctctttgttaatcgctacagtctccttccttcttcctctatctcatcttcaccttcacccct |
31676640 |
T |
|
| Q |
215 |
ccatttaaaccataaatttctcgtggagcaattatcttggttcgttggtcaattcacatccaagatttcaaccccttcttgctgtgatagacagaaatgt |
314 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
31676641 |
ccatttaaaccataaatttctcgtggagcaattatcttagttcgttggtcaattcacatccaagattccaaccccttcttgctgtgatagacagaaatgt |
31676740 |
T |
|
| Q |
315 |
gctaaaatattaattttgtttttatgaaaaatatgtgggataaaagtgagatttaaatttttgtnnnnnnnnnnngggtgagatttagagaaattgtaag |
414 |
Q |
| |
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|||||||| ||||||||||||||||||||||||||| | |||||||||||||||| |||||||| |||||||||||||||||||||||| |
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| T |
31676741 |
gctaaaatgttaattttgtttttatgaaaaatatgtagaataaaagtgagatttagatttttgtaaaaaaaaaaa-ggtgagatttagagaaattgtaag |
31676839 |
T |
|
| Q |
415 |
cctatgtgaccacccactgagaatacatttttcatgagggaaatcagttcccttaaagacaaatcac |
481 |
Q |
| |
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|||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
31676840 |
cctatgtgaccacccattgagagtacatttttcatgagggaaatcagttcccttaaagacaaatcac |
31676906 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 18 - 481
Target Start/End: Complemental strand, 623382 - 622914
Alignment:
| Q |
18 |
catggtcctctctaattgaccttctacatcaggtttcacttcnnnnnnnn-gtccactgccccatacaatgtaattacatttatgcacttctgtataatc |
116 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||| ||||| ||||||||||| |||||||||||||||||||||||||||||| |
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| T |
623382 |
catggtcctcactaattgaccttctacatcaggtttcacttctttttttttgtccatggccccatacaaggtaattacatttatgcacttctgtataatc |
623283 |
T |
|
| Q |
117 |
cctaggctaagaatcattttcctcctctctccatttctctttgttaatcgctacaggctccttccttcttcctctatctcatcttcaccttcacccatcc |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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|
| T |
623282 |
cctaggctaagaatcattttcctcctctctccatttctctttgttattcgctacaggctccttccttcttcctctatctcatcttcaccttcacccctcc |
623183 |
T |
|
| Q |
217 |
atttaaaccataaatttctcgtggagcaattatcttggttcgttggtcaattcacatccaagatttcaaccccttcttgctgtgatagacagaaatgtgc |
316 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||| |||||||||||||||||||||||||||||||||| |
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|
| T |
623182 |
atttaaaccataaatttctcgtggagcaattatcttggttcgtcggtcaattcacatcaaagattccaaccccttcttgctgtgatagacagaaatgtgc |
623083 |
T |
|
| Q |
317 |
taaaatattaattttgtttttatgaaaaatatgtgggataaaagtgagatttaaatttttgt----nnnnnnnnnnngggtgagatttagagaaattgta |
412 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||| |
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| T |
623082 |
taaaatgttaattttgtttttatgaaaaatatgtgggataaaagtgagatttagatttttgtaaaaaaaaaaaaaaaaggtgagatttagagaaattgta |
622983 |
T |
|
| Q |
413 |
agcctatgtgaccacccactgagaatacatttttcatgagggaaatcagttcccttaaagacaaatcac |
481 |
Q |
| |
|
|||||||||||||||||| ||| | |||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
622982 |
agcctatgtgaccacccattgatagtacatttttcatgagggaaatcagttcccttaaagacaaatcac |
622914 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 75 - 479
Target Start/End: Original strand, 32185550 - 32185955
Alignment:
| Q |
75 |
gccccatacaatgtaattacatttatgcacttctgtataatccctaggctaagaatcattttcctcctctctccatttctctttgttaatcgctacaggc |
174 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
32185550 |
gccccatacaaggtaattacatttatgcacttctgtataatctctaggctaagaatcattttcctcctctctccatttctctttgttaatcgctacaggc |
32185649 |
T |
|
| Q |
175 |
tccttccttcttcctctatctcatcttcaccttcacccatccatttaaaccataaatttctcgtggagcaattatcttggttcgttggtcaattcacatc |
274 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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|
| T |
32185650 |
tccttccttcttcctctatctcatcttcaccttcacccctccatttaaaccataaatttctcctggagcaattatcttggttcgttggtcaattcacatc |
32185749 |
T |
|
| Q |
275 |
caagatttcaaccccttcttgctgtgatagacagaaatgtgctaaaatattaattttgtttttatgaaaaatatgtgggataaaagtgagatttaaattt |
374 |
Q |
| |
|
||||||| ||||||||||||||||||||| ||| ||||||||| |||| |||||||||||| |||||||||||||||| |||||||||||||||| |||| |
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|
| T |
32185750 |
caagattccaaccccttcttgctgtgataaacaaaaatgtgctgaaatgttaattttgtttctatgaaaaatatgtggtataaaagtgagatttagattt |
32185849 |
T |
|
| Q |
375 |
ttgt--nnnnnnnnnnngggtgagatttagagaaattgtaagcctatgtgaccacccactgagaatacatttttcatgagggaaatcagttcccttaaag |
472 |
Q |
| |
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|||| || |||| |||||||||||||||||||||||||| ||||| ||||| ||||||||||| ||||||||| ||||||||||||| |
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| T |
32185850 |
ttgtaaaaaaaaaaaaaggtagaga-ttagagaaattgtaagcctatgtgactacccattgagagtacatttttcacgagggaaattagttcccttaaag |
32185948 |
T |
|
| Q |
473 |
acaaatc |
479 |
Q |
| |
|
||||||| |
|
|
| T |
32185949 |
acaaatc |
32185955 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 19 - 54
Target Start/End: Original strand, 32185489 - 32185524
Alignment:
| Q |
19 |
atggtcctctctaattgaccttctacatcaggtttc |
54 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||| |
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|
| T |
32185489 |
atggtcctctctaattgaccttctacatcaagtttc |
32185524 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 298; Significance: 1e-167; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 19 - 479
Target Start/End: Original strand, 30934672 - 30935135
Alignment:
| Q |
19 |
atggtcctctctaattgaccttctacatcaggtttcacttcnnnnnnnn--gtccactgccccatacaatgtaattacatttatgcacttctgtataatc |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
30934672 |
atggtcctctctaattgaccttctacatcaggtttcacttcttttttttttgtccatggccccatacaaggtaattacatttatgcacttctgtataatc |
30934771 |
T |
|
| Q |
117 |
cctaggctaagaatcattttcctcctctctccatttctctttgttaatcgctacaggctccttccttcttcctctatctcatcttcaccttcacccatcc |
216 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
30934772 |
tctaggctaagaatcattttcctcctctctccatttctctttgttaatcgctacaggctccttccttcttcctctatctcatcttcaccttcacccctcc |
30934871 |
T |
|
| Q |
217 |
atttaaaccataaatttctcgtggagcaattatcttggttcgttggtcaattcacatccaagatttcaaccccttcttgctgtgatagacagaaatgtgc |
316 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||| |||||||| |
|
|
| T |
30934872 |
atttaaaccataaatttctcctggagcaattatcttggttcgttggtcaattcacatccaagattccaaccccttcttgctgtgataaacaaaaatgtgc |
30934971 |
T |
|
| Q |
317 |
taaaatattaattttgtttttatgaaaaatatgtgggataaaagtgagatttaaatttttgt--nnnnnnnnnnngggtgagatttagagaaattgtaag |
414 |
Q |
| |
|
| |||| |||||||||||| |||||||||||||||| |||||||||||||||| |||||||| ||||||| |||||||||||||||| |
|
|
| T |
30934972 |
tgaaatgttaattttgtttctatgaaaaatatgtggtataaaagtgagatttagatttttgtaaaaaaaaaaaaaaggtgaga-ttagagaaattgtaag |
30935070 |
T |
|
| Q |
415 |
cctatgtgaccacccactgagaatacatttttcatgagggaaatcagttcccttaaagacaaatc |
479 |
Q |
| |
|
|||||||||| ||||| ||||| ||||||||||| ||||||||| |||||||||||||||||||| |
|
|
| T |
30935071 |
cctatgtgactacccattgagagtacatttttcacgagggaaattagttcccttaaagacaaatc |
30935135 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 298; Significance: 1e-167; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 19 - 479
Target Start/End: Original strand, 7662915 - 7663378
Alignment:
| Q |
19 |
atggtcctctctaattgaccttctacatcaggtttcacttcnnnnnnnn--gtccactgccccatacaatgtaattacatttatgcacttctgtataatc |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
7662915 |
atggtcctctctaattgaccttctacatcaggtttcacttcttttttttttgtccatggccccatacaaggtaattacatttatgcacttctgtataatc |
7663014 |
T |
|
| Q |
117 |
cctaggctaagaatcattttcctcctctctccatttctctttgttaatcgctacaggctccttccttcttcctctatctcatcttcaccttcacccatcc |
216 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
7663015 |
tctaggctaagaatcattttcctcctctctccatttctctttgttaatcgctacaggctccttccttcttcctctatctcatcttcaccttcacccctcc |
7663114 |
T |
|
| Q |
217 |
atttaaaccataaatttctcgtggagcaattatcttggttcgttggtcaattcacatccaagatttcaaccccttcttgctgtgatagacagaaatgtgc |
316 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||| |||||||| |
|
|
| T |
7663115 |
atttaaaccataaatttctcctggagcaattatcttggttcgttggtcaattcacatccaagattccaaccccttcttgctgtgataaacaaaaatgtgc |
7663214 |
T |
|
| Q |
317 |
taaaatattaattttgtttttatgaaaaatatgtgggataaaagtgagatttaaatttttgt--nnnnnnnnnnngggtgagatttagagaaattgtaag |
414 |
Q |
| |
|
| |||| |||||||||||| |||||||||||||||| |||||||||||||||| |||||||| ||||||| |||||||||||||||| |
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|
| T |
7663215 |
tgaaatgttaattttgtttctatgaaaaatatgtggtataaaagtgagatttagatttttgtaaaaaaaaaaaaaaggtgaga-ttagagaaattgtaag |
7663313 |
T |
|
| Q |
415 |
cctatgtgaccacccactgagaatacatttttcatgagggaaatcagttcccttaaagacaaatc |
479 |
Q |
| |
|
|||||||||| ||||| ||||| ||||||||||| ||||||||| |||||||||||||||||||| |
|
|
| T |
7663314 |
cctatgtgactacccattgagagtacatttttcacgagggaaattagttcccttaaagacaaatc |
7663378 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 442 - 481
Target Start/End: Complemental strand, 2143829 - 2143790
Alignment:
| Q |
442 |
tttttcatgagggaaatcagttcccttaaagacaaatcac |
481 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2143829 |
tttttcatgagggaaatcagttcccttaaagacaaatcac |
2143790 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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