View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11475_low_20 (Length: 341)
Name: NF11475_low_20
Description: NF11475
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11475_low_20 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 285; Significance: 1e-160; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 18 - 341
Target Start/End: Complemental strand, 42792570 - 42792253
Alignment:
| Q |
18 |
atttcgtgaggtggtgaattgatttaggggtttctttcttactacctgtactggtccgaacacaatgggtggaatctaaccctgtcaaataaaaatggga |
117 |
Q |
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| T |
42792570 |
atttcgtgaggtggtgaattgatttaggggtttctttcttactacctgtactggtccgaacacaatgggtgga------ccctgtcaaataaaaatggga |
42792477 |
T |
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| Q |
118 |
caaaaatatgagataagacaaggacacaactcaaacaggaaccggattctgattattcctttcgttccaatttaatttgaaaacaaaggcaatttacttt |
217 |
Q |
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| T |
42792476 |
caaaaatatgagataagacaaggacacaactcaaacaggaaccggattctggttattcctttcgttccaatttaatttgaaaacaaaggcaatttacttt |
42792377 |
T |
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| Q |
218 |
gactctttgtgcaacgttctattggtttcatactactatgtgaatacttggactcttttttaatgtaattttgattagggtcacagagttacatatctca |
317 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
42792376 |
gactctttgtgcaacgttctattggtttcatactactatgtgaatactttgactcctttttaatgtaattttgattagggtcacagagttacatctctca |
42792277 |
T |
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| Q |
318 |
tttgctaattttctctatttgttc |
341 |
Q |
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| T |
42792276 |
tttgctaattttctctatttgttc |
42792253 |
T |
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