View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11475_low_23 (Length: 314)
Name: NF11475_low_23
Description: NF11475
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11475_low_23 |
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Alignment Details
Target: chr2 (Bit Score: 165; Significance: 3e-88; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 107 - 291
Target Start/End: Original strand, 41318931 - 41319115
Alignment:
| Q |
107 |
tgtaaagaataatgaagattcctctcttaatgaatcaaatcaagagaaatcaaacaaactattggaaaggaatatgtgtgaatgcaatgcattaatacat |
206 |
Q |
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| T |
41318931 |
tgtaaagaataatgaagattcctctcttaatgaatcaaatcaagagaaatcaaacaaaccattggaaaggaatatgtgtgaatgcaatgccttaatacat |
41319030 |
T |
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| Q |
207 |
ggagtcaaaccataagtatatttccttatatgatgtttattaccgttggcttatcaaaagcaaataatagctatgaagacactta |
291 |
Q |
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| T |
41319031 |
ggagtcaaaccataagtatatttacttatatgatgtttattaccgttgacttatcaaaagcaaataatagccatgaagacactta |
41319115 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 158; Significance: 4e-84; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 107 - 295
Target Start/End: Complemental strand, 44524199 - 44524008
Alignment:
| Q |
107 |
tgtaaagaataatgaagattcctctcttaatga---atcaaatcaagagaaatcaaacaaactattggaaaggaatatgtgtgaatgcaatgcattaata |
203 |
Q |
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| T |
44524199 |
tgtaaagaataatgaagattcctctcttaatgatgaatcaaatcaagagaaatcaaacaaaccattggaaaggaatatgtgtgaatgtaatgccttaata |
44524100 |
T |
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| Q |
204 |
catggagtcaaaccataagtatatttccttatatgatgtttattaccgttggcttatcaaaagcaaataatagctatgaagacacttaatgt |
295 |
Q |
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| T |
44524099 |
catggagtcaaaccataagtatatttccttatatgatgtttattactgttggcttatcaaaagcaaataatagccatgaagacacttaatgt |
44524008 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 54; Significance: 5e-22; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 106 - 295
Target Start/End: Complemental strand, 12503538 - 12503349
Alignment:
| Q |
106 |
gtgtaaagaataatgaagattcctctcttaatgaatcaaatcaagagaaatcaaacaaactattggaaaggaatatgtgtgaatgcaatgcattaataca |
205 |
Q |
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| T |
12503538 |
gtgtaaagaataacgaagattcctct-ttaatgaatcaaatcaagataaacca---------ttggaaatcaat--gtgtgaatgcaatgccttgataca |
12503451 |
T |
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| Q |
206 |
tggagtcaaacca------------taagtatatttccttatatgatgtttattaccgttggcttatcaaaagcaaataatagctatgaagacacttaat |
293 |
Q |
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| T |
12503450 |
tggagtcaaaccaaatagaggcacttaagtatatttccttatatatggtttattaccgttggcttatcaaaaggaaataatagccataaagccacttaat |
12503351 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 49; Significance: 5e-19; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 107 - 175
Target Start/End: Complemental strand, 11831253 - 11831185
Alignment:
| Q |
107 |
tgtaaagaataatgaagattcctctcttaatgaatcaaatcaagagaaatcaaacaaactattggaaag |
175 |
Q |
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| T |
11831253 |
tgtaaagaataatgaagactcaactattaatgaatcaaatcaagacaaatcaaacaaactattggaaag |
11831185 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 107 - 165
Target Start/End: Original strand, 37130522 - 37130580
Alignment:
| Q |
107 |
tgtaaagaataatgaagattcctctcttaatgaatcaaatcaagagaaatcaaacaaac |
165 |
Q |
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| T |
37130522 |
tgtaaagaataatgaaaactcaactattaatgaatcaaatcaagacaaatcaaaaaaac |
37130580 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 107 - 156
Target Start/End: Original strand, 11831133 - 11831182
Alignment:
| Q |
107 |
tgtaaagaataatgaagattcctctcttaatgaatcaaatcaagagaaat |
156 |
Q |
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| T |
11831133 |
tgtaaagaataatgaagactcaactattaatgaatcaaatcaagacaaat |
11831182 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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