View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11475_low_26 (Length: 284)
Name: NF11475_low_26
Description: NF11475
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11475_low_26 |
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Alignment Details
Target: chr3 (Bit Score: 261; Significance: 1e-145; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 1 - 275
Target Start/End: Complemental strand, 50307471 - 50307200
Alignment:
| Q |
1 |
atattctcaattttttctacttccacaacttgatcatgaggttgattaatctcatgcacactttcaacttgatcatgttcttgaatattctcaatttctt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50307471 |
atattctcaattttttctacttccacaacttgatcatgaggttgattaatctcatgcacactttcaacttgatcatgttcttgaatattctcaatttctt |
50307372 |
T |
|
| Q |
101 |
ctacttccccagcattatcattgtttgtgatagcttctttaacttttggttctgtcttagtttcaacaacattgattgtttctgttgtttcttcattatt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
50307371 |
ctacttccccagcattatcattgtttgtgatagcttctttaacttttggttctgtcttagtttcaacaacattgattgtttctgttgtttcttc---att |
50307275 |
T |
|
| Q |
201 |
agtactactttttgtagcaagattctttgaactactcttcttagtagtaccttgttttggagtctttgatgatgt |
275 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50307274 |
agtactactttttgtagcaagattctttgaactactcttcttagtagtaccttgttttggagtctttgatgatgt |
50307200 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 113
Target Start/End: Complemental strand, 50307714 - 50307605
Alignment:
| Q |
1 |
atattctcaattttttctacttccacaacttgatcatgaggttgattaatctcatgcacactttcaacttgatcatgttcttgaatattctcaatttctt |
100 |
Q |
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|||||||||||||||||||||||| ||||||||| | | ||||||||||||| | ||| |||||||||||||| ||||| ||||||||||||||| || |
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| T |
50307714 |
atattctcaattttttctacttccccaacttgat---gtgattgattaatctcaggtacattttcaacttgatcacgttctagaatattctcaatttttt |
50307618 |
T |
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| Q |
101 |
ctacttccccagc |
113 |
Q |
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||||||||||||| |
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| T |
50307617 |
ctacttccccagc |
50307605 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 108
Target Start/End: Complemental strand, 50307552 - 50307448
Alignment:
| Q |
1 |
atattctcaattttttctacttccacaacttgatcatgaggttgattaatctcatgcacactttcaacttgatcatgttcttgaatattctcaatttctt |
100 |
Q |
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|
|||||||||||||||||||||||| | |||||| | | ||||||||||||| | | | |||||||||||||| ||||||||||||||||||||| || |
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| T |
50307552 |
atattctcaattttttctacttcctcggcttgat---gtgattgattaatctcaggtatattttcaacttgatcacgttcttgaatattctcaatttttt |
50307456 |
T |
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| Q |
101 |
ctacttcc |
108 |
Q |
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|||||||| |
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| T |
50307455 |
ctacttcc |
50307448 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 108
Target Start/End: Complemental strand, 50307633 - 50307529
Alignment:
| Q |
1 |
atattctcaattttttctacttccacaacttgatcatgaggttgattaatctcatgcacactttcaacttgatcatgttcttgaatattctcaatttctt |
100 |
Q |
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|
|||||||||||||||||||||||| || ||| |||| | ||||||||||||| | ||| | ||||||||||| ||||||||||||||||||||| || |
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| T |
50307633 |
atattctcaattttttctacttccccagctt---catgtgattgattaatctcaggtacattatcaacttgatcgcgttcttgaatattctcaatttttt |
50307537 |
T |
|
| Q |
101 |
ctacttcc |
108 |
Q |
| |
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|||||||| |
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|
| T |
50307536 |
ctacttcc |
50307529 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 62 - 111
Target Start/End: Complemental strand, 50307737 - 50307688
Alignment:
| Q |
62 |
tttcaacttgatcatgttcttgaatattctcaatttcttctacttcccca |
111 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
50307737 |
tttcaacttgatcatgttcttgaatattctcaattttttctacttcccca |
50307688 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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