View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11475_low_27 (Length: 279)
Name: NF11475_low_27
Description: NF11475
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11475_low_27 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 238; Significance: 1e-132; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 19 - 268
Target Start/End: Complemental strand, 41321764 - 41321515
Alignment:
| Q |
19 |
tgttgcacaagttaaaaatatactggaaactataagacaatatgatagagaagttaatgcattgatcaattgatgtatgcaagatcaactaagctcacag |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41321764 |
tgttgcacaagttaaaaatatactggaaactataagacaatatgatagagaagttaatgcattgatcaattgatgtatgcaagatcaactaagctcacag |
41321665 |
T |
|
| Q |
119 |
ggacgaagtgaaagtatcttagtatgcacatatatgaataatggttaatttcatttcctataatataatttcttctcatttaaattcgtattagaacttg |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
41321664 |
ggacgaagtgaaagtatcttagtatgcacatatatgaataatggttaatttcatttcctataatataatttcttttcatttaaattcgtattagaacttg |
41321565 |
T |
|
| Q |
219 |
ttccataaagtgcattttgagaataatagcattaaataatgtgcattcat |
268 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
41321564 |
ttccataaagtacattttgagaataatagcattaaataacgtgcattcat |
41321515 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University