View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11475_low_31 (Length: 255)
Name: NF11475_low_31
Description: NF11475
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11475_low_31 |
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Alignment Details
Target: chr7 (Bit Score: 221; Significance: 1e-122; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 20 - 248
Target Start/End: Original strand, 30165874 - 30166102
Alignment:
| Q |
20 |
gcaagaatacgcagtgcattcatcttggactaagactcttgatttttcttttcatcctcctctggatttttctccaatatgctttacaaattgcggtgat |
119 |
Q |
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| T |
30165874 |
gcaagaatacgcagtgcattcatcttggactacgactcttgatttttcttttcatcctcctctggatttttctccaatatgctttacaaattgcggtgat |
30165973 |
T |
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| Q |
120 |
atagttggaccaattgctggtggtggattagcaaagcttaatgacaaaggacaactgcaagagtatcattcctatggtgaccgttacttgatgagatccc |
219 |
Q |
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| T |
30165974 |
atagttggaccaattgctggtggtggattagcaaagcttaatgacaaaggacaactgcaagagtatcattcctatggtgaccgttactttatgagatccc |
30166073 |
T |
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| Q |
220 |
aaatggcggtgtatatagagtctctgctt |
248 |
Q |
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| T |
30166074 |
aaatggcggtgtatatagagtctctgctt |
30166102 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 20 - 68
Target Start/End: Complemental strand, 30119952 - 30119904
Alignment:
| Q |
20 |
gcaagaatacgcagtgcattcatcttggactaagactcttgatttttct |
68 |
Q |
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| T |
30119952 |
gcaagaatatgcagtgcattcatcttggattaagactcttgttttttct |
30119904 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 24 - 230
Target Start/End: Complemental strand, 30124991 - 30124785
Alignment:
| Q |
24 |
gaatacgcagtgcattcatcttggactaagactcttgatttttcttttcatcctcctctggatttttctccaatatgctttacaaattgcggtgatatag |
123 |
Q |
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| T |
30124991 |
gaatacgcaatggattcctgttggactcgaactcttgttttttctatgcatcctgctccgcacttttccccaatatcctttacaaaattcggtgatatag |
30124892 |
T |
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| Q |
124 |
ttgg-accaattgctggtggtggattagcaaagcttaatgacaaaggacaactgcaagagtatcattcctatggtgaccgttacttgatgagatcccaaa |
222 |
Q |
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| T |
30124891 |
ttggaactgattg-taggggtggattcgtgaagtttaatgacaaaggacagctgctagagcatcactcccgtggtgattgttactttgtaagatctcaaa |
30124793 |
T |
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| Q |
223 |
tggcggtg |
230 |
Q |
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| T |
30124792 |
tagcggtg |
30124785 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 85 - 128
Target Start/End: Complemental strand, 30130884 - 30130841
Alignment:
| Q |
85 |
atttttctccaatatgctttacaaattgcggtgatatagttgga |
128 |
Q |
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| T |
30130884 |
atttttccctaatatcctttacaaattgcggtgatatagttgga |
30130841 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 103; Significance: 2e-51; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 20 - 244
Target Start/End: Complemental strand, 41311041 - 41310820
Alignment:
| Q |
20 |
gcaagaatacgcagtgcattcatcttggactaagactcttgatttttcttttcatcctcctctggatttttctccaatatgctttacaaattgcggtgat |
119 |
Q |
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| T |
41311041 |
gcaagaatacgcaatacattcatcttggactaagacttttgatttttcttttcaccccgatccggagttttccccattatgctttacaaattgtggcgat |
41310942 |
T |
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| Q |
120 |
atagttggaccaattgctggtggtggattagcaaagcttaatgacaaaggacaactgcaagagtatcattcctatggtgaccgttacttgatgagatccc |
219 |
Q |
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|| ||||||||| || ||||||||||| |||||||||| |||||||||||||| | ||||||| |||||| ||||||||| ||| |||||||||| |
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| T |
41310941 |
attgttggacca---gccaatggtggattagttaagcttaatgtcaaaggacaactgctaaagtatcactcctatagtgaccgttgctttatgagatccc |
41310845 |
T |
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| Q |
220 |
aaatggcggtgtatatagagtctct |
244 |
Q |
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||||||||||||||| ||||||||| |
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| T |
41310844 |
aaatggcggtgtatacagagtctct |
41310820 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 20 - 248
Target Start/End: Complemental strand, 43164719 - 43164491
Alignment:
| Q |
20 |
gcaagaatacgcagtgcattcatcttggactaagactcttgatttttcttttcatcctcctctggatttttctccaatatgctttacaaattgcggtgat |
119 |
Q |
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|||||||||||| ||||||||||||||||| |||||| |||||||||||||| ||||| ||| |||||||| ||| |||||||||||||| | |||||| |
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| T |
43164719 |
gcaagaatacgctgtgcattcatcttggaccaagacttttgatttttcttttgatcctgctccagatttttccccagtatgctttacaaatggtggtgat |
43164620 |
T |
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| Q |
120 |
atagttggaccaattgctggtggtggattagcaaagcttaatgacaaaggacaactgcaagagtatcattcctatggtgaccgttacttgatgagatccc |
219 |
Q |
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|| ||||||||| |||||| |||||||||||| |||||| ||||||||||| |||| ||||||||| ||||||||||| || |||| | ||||| | |
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| T |
43164619 |
attgttggaccagttgctgatggtggattagcgaagcttgatgacaaaggaggcctgctagagtatcactcctatggtgattgtcactttgtaagatcgc |
43164520 |
T |
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| Q |
220 |
aaatggcggtgtatatagagtctctgctt |
248 |
Q |
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| || ||||||||| ||| ||||||||| |
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| T |
43164519 |
agatatcggtgtatacagaatctctgctt |
43164491 |
T |
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