View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11475_low_33 (Length: 252)
Name: NF11475_low_33
Description: NF11475
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11475_low_33 |
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Alignment Details
Target: chr5 (Bit Score: 216; Significance: 1e-119; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 30 - 245
Target Start/End: Original strand, 4640594 - 4640809
Alignment:
| Q |
30 |
gtcttatgtattattagattaaagtatagttagtagcttctttaatcaagtttgtaatttgtgatctcatataatggatcttgcagaagaacagattggt |
129 |
Q |
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| T |
4640594 |
gtcttatgtattattagattaaagtatagttagtagcttctttaatcaagtttgtaatttgtgatctcatataatggatcttgcagaagaacagattggt |
4640693 |
T |
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| Q |
130 |
attgatctgttacttgtgtagaggactagaaaaaggatgccaaaccagctatggtttgcactgccaatgatttacaaggatggaaagatttcccaaaagg |
229 |
Q |
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| T |
4640694 |
attgatctgttacttgtgtagaggactagaaaaaggatgccaaaccagctatggtttgcactgccaatgatttacaaggatggaaagatttcccaaaagg |
4640793 |
T |
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| Q |
230 |
acttagggttcttctc |
245 |
Q |
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| T |
4640794 |
acttagggttcttctc |
4640809 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 162 - 245
Target Start/End: Complemental strand, 14803397 - 14803312
Alignment:
| Q |
162 |
aaggatgccaaaccagctatggtttgcactgccaatgatt--tacaaggatggaaagatttcccaaaaggacttagggttcttctc |
245 |
Q |
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| T |
14803397 |
aaggatgctaagccagctatagtttatactgccaatgattattataagaatggaaagattttcccaaaggactcaaggttcttctc |
14803312 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 57; Significance: 7e-24; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 161 - 245
Target Start/End: Complemental strand, 40804764 - 40804680
Alignment:
| Q |
161 |
aaaggatgccaaaccagctatggtttgcactgccaatgatttacaaggatggaaagatttcccaaaaggacttagggttcttctc |
245 |
Q |
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| T |
40804764 |
aaaggatgctaaaccagctatggtttgtactgccaatgatttacaagaatggaaagattttcccaaaggactcaaggttcttctc |
40804680 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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