View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11475_low_36 (Length: 243)
Name: NF11475_low_36
Description: NF11475
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11475_low_36 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 212; Significance: 1e-116; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 6126482 - 6126709
Alignment:
| Q |
1 |
acaatacatcagtgaaggaaatgtttcttttgaattcaatgttacaactgatagtgaggaacaagattgttttctcagtgtgaaagggtgtggaatatgc |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6126482 |
acaatacatcagtgaaggaaatgtttcttttgaattcaatgttacaaatgatagtgaggaacaagattgttttctcagtgtgaaagggtgtggaatatgc |
6126581 |
T |
|
| Q |
101 |
ccaatatatacctcagaatttttgagtc-tttagacatgttgcatttagacaaggatgtagaatcatgtatgcgtagaaatattcagtgttgaaatatgt |
199 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
6126582 |
ccaatatatacctcagaatttttgagtcttttagacatgttgcatttagacaaggatgtagaatcatgtatgcgtaggaatattcagtgttgaaatatgt |
6126681 |
T |
|
| Q |
200 |
catgagataaaagacaatgacattgaat |
227 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
|
| T |
6126682 |
catgagataaaagacaatgacattgaat |
6126709 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 164; E-Value: 9e-88
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 6171880 - 6171657
Alignment:
| Q |
1 |
acaatacatcagtgaaggaaatgtttcttttgaattcaatgttacaactgatagtgaggaacaagattgttttctcagtgtgaaagggtgtggaatatgc |
100 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||| ||||||||||||| |
|
|
| T |
6171880 |
acaatacatcaatgaaggaaatgtttcttttgaattcaatgttacaactgatagtgaggaatatgattgttttctcagtgtgaaagagtgtggaatatgc |
6171781 |
T |
|
| Q |
101 |
ccaatatatacctcagaatttttgagtc-tttagacatgttgcatttagacaaggatgtagaatcatgtatgcgtagaaatattca--gtgttgaaatat |
197 |
Q |
| |
|
|||||||||||||||||| |||||||| ||||| ||||||||||||||||||||||||||||||||||||| |||| |||||||| |||||||||||| |
|
|
| T |
6171780 |
ccaatatatacctcagaa--tttgagtcttttaggcatgttgcatttagacaaggatgtagaatcatgtatgtgtaggaatattcagtgtgttgaaatat |
6171683 |
T |
|
| Q |
198 |
gtcatgagataaaagacaatgacatt |
223 |
Q |
| |
|
||||||||| |||||||||||||||| |
|
|
| T |
6171682 |
gtcatgagagaaaagacaatgacatt |
6171657 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University