View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11475_low_38 (Length: 242)

Name: NF11475_low_38
Description: NF11475
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11475_low_38
NF11475_low_38
[»] scaffold0119 (1 HSPs)
scaffold0119 (169-242)||(685-758)
[»] chr6 (18 HSPs)
chr6 (169-242)||(26670036-26670109)
chr6 (169-242)||(9698360-9698433)
chr6 (171-242)||(30735984-30736055)
chr6 (169-242)||(7273362-7273435)
chr6 (169-242)||(26466799-26466872)
chr6 (171-242)||(24204014-24204085)
chr6 (169-242)||(13743248-13743321)
chr6 (169-242)||(13748748-13748821)
chr6 (169-242)||(30014343-30014416)
chr6 (169-241)||(3213400-3213472)
chr6 (169-241)||(21279929-21280001)
chr6 (169-242)||(7292747-7292820)
chr6 (169-242)||(7367549-7367622)
chr6 (171-241)||(27441544-27441614)
chr6 (169-241)||(21293705-21293777)
chr6 (169-237)||(31109254-31109322)
chr6 (169-241)||(33242403-33242475)
chr6 (169-241)||(33253913-33253985)
[»] chr7 (29 HSPs)
chr7 (169-242)||(35069721-35069794)
chr7 (169-242)||(5015395-5015468)
chr7 (169-242)||(24001039-24001112)
chr7 (169-242)||(42538458-42538531)
chr7 (169-242)||(42972852-42972925)
chr7 (171-242)||(44326180-44326251)
chr7 (169-242)||(5810951-5811024)
chr7 (178-241)||(32029845-32029908)
chr7 (171-242)||(43343651-43343722)
chr7 (171-242)||(44416961-44417032)
chr7 (171-241)||(10573751-10573821)
chr7 (172-242)||(26898429-26898499)
chr7 (169-242)||(9216302-9216374)
chr7 (169-241)||(40236919-40236991)
chr7 (171-242)||(4638226-4638297)
chr7 (177-242)||(45326028-45326093)
chr7 (169-237)||(5194263-5194331)
chr7 (169-241)||(31513287-31513359)
chr7 (169-242)||(41861674-41861749)
chr7 (170-241)||(31408661-31408732)
chr7 (169-236)||(39998408-39998475)
chr7 (185-242)||(27393287-27393344)
chr7 (192-241)||(38160607-38160656)
chr7 (169-222)||(47279744-47279797)
chr7 (169-237)||(43317443-43317511)
chr7 (171-241)||(16180385-16180454)
chr7 (169-202)||(38160661-38160694)
chr7 (169-241)||(24280624-24280696)
chr7 (169-241)||(27535259-27535331)
[»] chr4 (32 HSPs)
chr4 (169-242)||(27550309-27550382)
chr4 (169-242)||(1771293-1771366)
chr4 (171-242)||(43514713-43514784)
chr4 (169-242)||(25051693-25051766)
chr4 (169-242)||(12496956-12497029)
chr4 (169-242)||(27864564-27864637)
chr4 (169-242)||(28982849-28982922)
chr4 (169-242)||(33703141-33703214)
chr4 (178-242)||(39631109-39631174)
chr4 (169-242)||(55966373-55966446)
chr4 (171-241)||(27893870-27893940)
chr4 (169-242)||(27316740-27316813)
chr4 (169-242)||(35017733-35017805)
chr4 (178-242)||(43949828-43949893)
chr4 (172-242)||(23204805-23204875)
chr4 (169-242)||(23035980-23036053)
chr4 (169-241)||(711960-712032)
chr4 (169-241)||(17619180-17619252)
chr4 (169-237)||(28988473-28988541)
chr4 (171-241)||(3756274-3756344)
chr4 (169-242)||(48463477-48463550)
chr4 (170-242)||(41878407-41878479)
chr4 (169-241)||(45490341-45490413)
chr4 (169-241)||(55272404-55272476)
chr4 (171-242)||(43735744-43735815)
chr4 (169-242)||(21687006-21687079)
chr4 (169-241)||(960898-960970)
chr4 (169-241)||(32728357-32728429)
chr4 (171-242)||(31680904-31680975)
chr4 (171-241)||(35037007-35037077)
chr4 (171-241)||(41327571-41327641)
chr4 (177-241)||(48435607-48435671)
[»] chr3 (26 HSPs)
chr3 (169-242)||(25413681-25413754)
chr3 (169-242)||(42100688-42100761)
chr3 (169-242)||(40808865-40808938)
chr3 (169-242)||(46941053-46941126)
chr3 (170-242)||(54237097-54237169)
chr3 (169-242)||(24688429-24688502)
chr3 (169-242)||(45126955-45127028)
chr3 (169-242)||(54246175-54246248)
chr3 (170-242)||(42394446-42394518)
chr3 (169-242)||(47191053-47191125)
chr3 (169-241)||(4190293-4190365)
chr3 (171-242)||(27748565-27748636)
chr3 (169-242)||(36150130-36150203)
chr3 (170-242)||(40480750-40480822)
chr3 (171-228)||(1078229-1078286)
chr3 (169-242)||(53273711-53273784)
chr3 (169-241)||(9434124-9434196)
chr3 (169-241)||(10457920-10457992)
chr3 (169-241)||(51757593-51757665)
chr3 (171-242)||(53581885-53581956)
chr3 (169-241)||(52628005-52628077)
chr3 (169-236)||(34791829-34791896)
chr3 (169-241)||(25996268-25996340)
chr3 (169-205)||(52629840-52629876)
chr3 (184-241)||(51249323-51249380)
chr3 (181-241)||(29558262-29558322)
[»] chr1 (21 HSPs)
chr1 (169-242)||(43571113-43571186)
chr1 (169-242)||(5489776-5489849)
chr1 (169-242)||(48498989-48499062)
chr1 (169-242)||(24769526-24769599)
chr1 (169-242)||(50448287-50448360)
chr1 (169-237)||(750337-750405)
chr1 (169-241)||(37814778-37814850)
chr1 (169-241)||(44112677-44112749)
chr1 (169-241)||(48119628-48119700)
chr1 (169-241)||(35003294-35003366)
chr1 (171-242)||(7447828-7447898)
chr1 (178-242)||(4401336-4401401)
chr1 (169-226)||(14427347-14427404)
chr1 (169-241)||(23989551-23989624)
chr1 (169-241)||(38335918-38335990)
chr1 (169-241)||(41065153-41065225)
chr1 (171-242)||(2497589-2497660)
chr1 (169-237)||(35000145-35000213)
chr1 (169-241)||(38113223-38113295)
chr1 (169-241)||(45639760-45639832)
chr1 (169-241)||(46168383-46168455)
[»] chr8 (24 HSPs)
chr8 (171-242)||(30912589-30912660)
chr8 (169-242)||(2165990-2166063)
chr8 (169-242)||(11582766-11582839)
chr8 (169-242)||(29705362-29705435)
chr8 (169-242)||(36743510-36743583)
chr8 (171-242)||(42295197-42295268)
chr8 (171-242)||(42699259-42699330)
chr8 (169-242)||(2546996-2547069)
chr8 (169-242)||(30660769-30660842)
chr8 (171-242)||(20148762-20148833)
chr8 (169-242)||(5754903-5754976)
chr8 (169-242)||(42197462-42197535)
chr8 (169-241)||(1375542-1375614)
chr8 (170-242)||(45397317-45397389)
chr8 (171-242)||(29800977-29801048)
chr8 (169-242)||(31384664-31384737)
chr8 (169-241)||(35181516-35181588)
chr8 (171-242)||(26125637-26125708)
chr8 (169-241)||(34304788-34304860)
chr8 (169-241)||(18066746-18066818)
chr8 (96-159)||(37425945-37426008)
chr8 (169-237)||(40528666-40528735)
chr8 (169-204)||(28977146-28977181)
chr8 (171-241)||(33630021-33630091)
[»] chr5 (15 HSPs)
chr5 (168-242)||(33855070-33855144)
chr5 (169-242)||(2614676-2614749)
chr5 (169-242)||(22512305-22512378)
chr5 (169-242)||(7617133-7617206)
chr5 (169-242)||(18033982-18034055)
chr5 (168-242)||(41334690-41334764)
chr5 (169-242)||(33801469-33801542)
chr5 (171-241)||(5256997-5257067)
chr5 (111-157)||(39785635-39785681)
chr5 (169-241)||(32473422-32473494)
chr5 (169-241)||(38470579-38470651)
chr5 (171-227)||(25915029-25915085)
chr5 (169-241)||(17208074-17208146)
chr5 (169-241)||(30622747-30622818)
chr5 (169-241)||(39122461-39122532)
[»] chr2 (25 HSPs)
chr2 (169-239)||(16096747-16096817)
chr2 (169-242)||(1750414-1750487)
chr2 (169-242)||(12302280-12302353)
chr2 (170-242)||(19047158-19047230)
chr2 (171-242)||(43490428-43490499)
chr2 (164-242)||(30838627-30838705)
chr2 (178-242)||(33229310-33229375)
chr2 (169-242)||(43335790-43335863)
chr2 (169-241)||(43114557-43114629)
chr2 (171-241)||(11825682-11825752)
chr2 (169-241)||(4764754-4764826)
chr2 (169-241)||(12415488-12415560)
chr2 (169-241)||(12427548-12427620)
chr2 (169-241)||(18491705-18491777)
chr2 (171-237)||(41282006-41282072)
chr2 (169-237)||(16803968-16804036)
chr2 (169-237)||(16843250-16843318)
chr2 (169-208)||(42849907-42849946)
chr2 (169-226)||(966877-966934)
chr2 (169-241)||(14285676-14285748)
chr2 (170-221)||(34817824-34817875)
chr2 (171-212)||(7070418-7070459)
chr2 (169-237)||(13780767-13780835)
chr2 (177-241)||(34895769-34895833)
chr2 (169-237)||(36168594-36168662)
[»] scaffold0038 (1 HSPs)
scaffold0038 (170-242)||(112656-112728)
[»] scaffold0385 (1 HSPs)
scaffold0385 (169-242)||(11251-11324)
[»] scaffold0187 (2 HSPs)
scaffold0187 (169-242)||(14215-14288)
scaffold0187 (169-242)||(24543-24616)
[»] scaffold0157 (1 HSPs)
scaffold0157 (169-242)||(23448-23521)
[»] scaffold0003 (1 HSPs)
scaffold0003 (171-241)||(45747-45817)


Alignment Details
Target: scaffold0119 (Bit Score: 66; Significance: 3e-29; HSPs: 1)
Name: scaffold0119
Description:

Target: scaffold0119; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 169 - 242
Target Start/End: Original strand, 685 - 758
Alignment:
Q  169 ggaaaatattacatgaacaccctttattcctacaccccattgtacacctcatgtattagggatattttggtaag 242  Q
    ||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  685 ggaaaatgttacatgaacaccctttattcctacacctcattgtacacctcatgtattagggatattttggtaag 758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 66; Significance: 3e-29; HSPs: 18)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 169 - 242
Target Start/End: Complemental strand, 26670109 - 26670036
Alignment:
Q  169 ggaaaatattacatgaacaccctttattcctacaccccattgtacacctcatgtattagggatattttggtaag 242  Q
    ||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  26670109 ggaaaatgttacatgaacaccctttattcctacacctcattgtacacctcatgtattagggatattttggtaag 26670036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 169 - 242
Target Start/End: Complemental strand, 9698433 - 9698360
Alignment:
Q  169 ggaaaatattacatgaacaccctttattcctacaccccattgtacacctcatgtattagggatattttggtaag 242  Q
    ||||||| |||||||||||||||||||||||||| |||||||||||||  ||||||||||||||||||||||||    
T  9698433 ggaaaatgttacatgaacaccctttattcctacatcccattgtacaccctatgtattagggatattttggtaag 9698360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 171 - 242
Target Start/End: Original strand, 30735984 - 30736055
Alignment:
Q  171 aaaatattacatgaacaccctttattcctacaccccattgtacacctcatgtattagggatattttggtaag 242  Q
    ||||| ||||||||||||  ||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  30735984 aaaatgttacatgaacactttttattcctacaccccattgtacacctcatgtattagtgatattttggtaag 30736055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 169 - 242
Target Start/End: Complemental strand, 7273435 - 7273362
Alignment:
Q  169 ggaaaatattacatgaacaccctttattcctacaccccattgtacacctcatgtattagggatattttggtaag 242  Q
    ||||||| ||||||||||||||||||||||||||||  |||||||||| |||||||||| ||||||||||||||    
T  7273435 ggaaaatgttacatgaacaccctttattcctacaccttattgtacaccccatgtattagagatattttggtaag 7273362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 169 - 242
Target Start/End: Original strand, 26466799 - 26466872
Alignment:
Q  169 ggaaaatattacatgaacaccctttattcctacaccccattgtacacctcatgtattagggatattttggtaag 242  Q
    ||||||| |||||| ||||||||||||||||||||||||||||||||  |||||||||||| ||||||||||||    
T  26466799 ggaaaatgttacataaacaccctttattcctacaccccattgtacactccatgtattagggttattttggtaag 26466872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 171 - 242
Target Start/End: Complemental strand, 24204085 - 24204014
Alignment:
Q  171 aaaatattacatgaacaccctttattcctacaccccattgtacacctcatgtattagggatattttggtaag 242  Q
    ||||| ||||||||||||| ||||||||||||||| |||||||||  |||||||||||||||||||||||||    
T  24204085 aaaatgttacatgaacaccatttattcctacaccctattgtacactccatgtattagggatattttggtaag 24204014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 169 - 242
Target Start/End: Complemental strand, 13743321 - 13743248
Alignment:
Q  169 ggaaaatattacatgaacaccctttattcctacaccccattgtacacctcatgtattagggatattttggtaag 242  Q
    ||||||| ||||||||||||| ||||||| |||| || |||||||||| |||||||||||||||||||||||||    
T  13743321 ggaaaatgttacatgaacaccttttattcatacatccaattgtacaccccatgtattagggatattttggtaag 13743248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 169 - 242
Target Start/End: Complemental strand, 13748821 - 13748748
Alignment:
Q  169 ggaaaatattacatgaacaccctttattcctacaccccattgtacacctcatgtattagggatattttggtaag 242  Q
    ||||||| ||||||||||||| ||||||| |||| || |||||||||| |||||||||||||||||||||||||    
T  13748821 ggaaaatgttacatgaacaccttttattcatacatccaattgtacaccccatgtattagggatattttggtaag 13748748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 169 - 242
Target Start/End: Original strand, 30014343 - 30014416
Alignment:
Q  169 ggaaaatattacatgaacaccctttattcctacaccccattgtacacctcatgtattagggatattttggtaag 242  Q
    ||||||| |||||||||||||||||||||||||| |||||| |||| | ||||||||||| |||||||||||||    
T  30014343 ggaaaatgttacatgaacaccctttattcctacatcccattatacatcccatgtattaggcatattttggtaag 30014416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 169 - 241
Target Start/End: Original strand, 3213400 - 3213472
Alignment:
Q  169 ggaaaatattacatgaacaccctttattcctacaccccattgtacacctcatgtattagggatattttggtaa 241  Q
    ||||||| |||||| |||||||||||||| |||| | ||||||||||| ||||||||| ||||||||||||||    
T  3213400 ggaaaatgttacataaacaccctttattcatacatctcattgtacaccccatgtattaaggatattttggtaa 3213472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 169 - 241
Target Start/End: Original strand, 21279929 - 21280001
Alignment:
Q  169 ggaaaatattacatgaacaccctttattcctacaccccattgtacacctcatgtattagggatattttggtaa 241  Q
    ||||||| |||||||||||||||||||| |||||  |||||| ||| | ||||||||||||||||||||||||    
T  21279929 ggaaaatgttacatgaacaccctttatttctacattccattgcacatcccatgtattagggatattttggtaa 21280001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 169 - 242
Target Start/End: Original strand, 7292747 - 7292820
Alignment:
Q  169 ggaaaatattacatgaacaccctttattcctacaccccattgtacacctcatgtattagggatattttggtaag 242  Q
    ||||||| ||||| ||||||| ||||||| |||||| |||| ||||||  ||||||||||||||||||||||||    
T  7292747 ggaaaatgttacaagaacaccatttattcatacacctcattatacaccctatgtattagggatattttggtaag 7292820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 169 - 242
Target Start/End: Original strand, 7367549 - 7367622
Alignment:
Q  169 ggaaaatattacatgaacaccctttattcctacaccccattgtacacctcatgtattagggatattttggtaag 242  Q
    ||||||| ||| ||||||| | ||||||| |||||| ||||||||| | |||||||||||||||||||||||||    
T  7367549 ggaaaatgttatatgaacatcatttattcatacacctcattgtacatcccatgtattagggatattttggtaag 7367622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 171 - 241
Target Start/End: Original strand, 27441544 - 27441614
Alignment:
Q  171 aaaatattacatgaacaccctttattcctacaccccattgtacacctcatgtattagggatattttggtaa 241  Q
    ||||| |||||||||||||||||| || ||||||| |||||||| |  |||||||| ||||||||||||||    
T  27441544 aaaatgttacatgaacaccctttaatcatacaccctattgtacatcctatgtattaaggatattttggtaa 27441614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 169 - 241
Target Start/End: Complemental strand, 21293777 - 21293705
Alignment:
Q  169 ggaaaatattacatgaacaccctttattcctacaccccattgtacacctcatgtattagggatattttggtaa 241  Q
    ||||||| |||||| |||||||||||||| ||||   || |||||||| ||||||||| ||||||||||||||    
T  21293777 ggaaaatgttacataaacaccctttattcatacatttcactgtacaccccatgtattaaggatattttggtaa 21293705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 169 - 237
Target Start/End: Complemental strand, 31109322 - 31109254
Alignment:
Q  169 ggaaaatattacatgaacaccctttattcctacaccccattgtacacctcatgtattagggatattttg 237  Q
    ||||||| |||||||||||||||||| || |||| |||||| |||||| |||| | |||||||||||||    
T  31109322 ggaaaatgttacatgaacaccctttaatcatacatcccattatacaccccatgcactagggatattttg 31109254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 169 - 241
Target Start/End: Original strand, 33242403 - 33242475
Alignment:
Q  169 ggaaaatattacatgaacaccctttattcctacaccccattgtacacctcatgtattagggatattttggtaa 241  Q
    ||||||| ||||||||||||| |||| || ||||||  |||||||||| ||||||||| ||| ||||||||||    
T  33242403 ggaaaatgttacatgaacaccatttaatcatacaccttattgtacaccccatgtattaaggacattttggtaa 33242475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 169 - 241
Target Start/End: Original strand, 33253913 - 33253985
Alignment:
Q  169 ggaaaatattacatgaacaccctttattcctacaccccattgtacacctcatgtattagggatattttggtaa 241  Q
    ||||||| ||||||||||||| |||| ||  |||||| |||||||||| |||| |||||||| || |||||||    
T  33253913 ggaaaatgttacatgaacaccatttaatcacacaccctattgtacaccccatgcattagggacatattggtaa 33253985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 62; Significance: 7e-27; HSPs: 29)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 169 - 242
Target Start/End: Original strand, 35069721 - 35069794
Alignment:
Q  169 ggaaaatattacatgaacaccctttattcctacaccccattgtacacctcatgtattagggatattttggtaag 242  Q
    ||||||| |||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  35069721 ggaaaatgttacatgaacactctttattcctacacctcattgtacacctcatgtattagggatattttggtaag 35069794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 169 - 242
Target Start/End: Original strand, 5015395 - 5015468
Alignment:
Q  169 ggaaaatattacatgaacaccctttattcctacaccccattgtacacctcatgtattagggatattttggtaag 242  Q
    ||||||| |||||||||||| ||||||| |||||| ||||||||||||||||||||||||||||||||||||||    
T  5015395 ggaaaatgttacatgaacactctttatttctacactccattgtacacctcatgtattagggatattttggtaag 5015468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 169 - 242
Target Start/End: Complemental strand, 24001112 - 24001039
Alignment:
Q  169 ggaaaatattacatgaacaccctttattcctacaccccattgtacacctcatgtattagggatattttggtaag 242  Q
    ||||||| |||||||||||||||||||||||||| |||||||||||||  ||||||||||||||||||||||||    
T  24001112 ggaaaatgttacatgaacaccctttattcctacatcccattgtacaccctatgtattagggatattttggtaag 24001039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 169 - 242
Target Start/End: Complemental strand, 42538531 - 42538458
Alignment:
Q  169 ggaaaatattacatgaacaccctttattcctacaccccattgtacacctcatgtattagggatattttggtaag 242  Q
    ||||||| |||||||||||||||||||||||||| |||||||||||||  ||||||||||||||||||||||||    
T  42538531 ggaaaatgttacatgaacaccctttattcctacatcccattgtacaccctatgtattagggatattttggtaag 42538458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 169 - 242
Target Start/End: Original strand, 42972852 - 42972925
Alignment:
Q  169 ggaaaatattacatgaacaccctttattcctacaccccattgtacacctcatgtattagggatattttggtaag 242  Q
    ||||||| |||| |||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  42972852 ggaaaatgttacctgaacatcctttattcctacactccattgtacacctcatgtattagggatattttggtaag 42972925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 171 - 242
Target Start/End: Original strand, 44326180 - 44326251
Alignment:
Q  171 aaaatattacatgaacaccctttattcctacaccccattgtacacctcatgtattagggatattttggtaag 242  Q
    ||||| |||||| |||||||||||||| |||| ||||||||||||||||| |||||||||||||||||||||    
T  44326180 aaaatgttacataaacaccctttattcatacatcccattgtacacctcatatattagggatattttggtaag 44326251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 169 - 242
Target Start/End: Complemental strand, 5811024 - 5810951
Alignment:
Q  169 ggaaaatattacatgaacaccctttattcctacaccccattgtacacctcatgtattagggatattttggtaag 242  Q
    ||||||| |||||||| |||||||||||||||||||||||||||||||  || |||||||||||||||| ||||    
T  5811024 ggaaaatgttacatgaccaccctttattcctacaccccattgtacaccctatatattagggatattttgataag 5810951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 178 - 241
Target Start/End: Complemental strand, 32029908 - 32029845
Alignment:
Q  178 tacatgaacaccctttattcctacaccccattgtacacctcatgtattagggatattttggtaa 241  Q
    ||||| |||||  |||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  32029908 tacataaacactttttattcctacaccccattgtacaccccatgtattagggatattttggtaa 32029845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 171 - 242
Target Start/End: Complemental strand, 43343722 - 43343651
Alignment:
Q  171 aaaatattacatgaacaccctttattcctacaccccattgtacacctcatgtattagggatattttggtaag 242  Q
    ||||| ||||||||||| | |||||| |||||||| |||||||||| |||||||||||||||||||| ||||    
T  43343722 aaaatgttacatgaacatcatttatttctacaccctattgtacaccccatgtattagggatattttgataag 43343651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 171 - 242
Target Start/End: Complemental strand, 44417032 - 44416961
Alignment:
Q  171 aaaatattacatgaacaccctttattcctacaccccattgtacacctcatgtattagggatattttggtaag 242  Q
    ||||| ||||||||||| | |||||| |||||||| |||||||||| |||||||||||||||||||| ||||    
T  44417032 aaaatgttacatgaacatcatttatttctacaccctattgtacaccccatgtattagggatattttgataag 44416961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 171 - 241
Target Start/End: Original strand, 10573751 - 10573821
Alignment:
Q  171 aaaatattacatgaacaccctttattcctacaccccattgtacacctcatgtattagggatattttggtaa 241  Q
    ||||| |||||| |||||||||||||| |||| || |||||||||| ||||||||||| ||||||||||||    
T  10573751 aaaatgttacataaacaccctttattcatacatcctattgtacaccccatgtattaggaatattttggtaa 10573821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 172 - 242
Target Start/End: Complemental strand, 26898499 - 26898429
Alignment:
Q  172 aaatattacatgaacaccctttattcctacaccccattgtacacctcatgtattagggatattttggtaag 242  Q
    |||| ||||||||||||| ||||||| ||||||| ||||||||   |||||||||||||||||||||||||    
T  26898499 aaatgttacatgaacaccttttattcatacacccaattgtacattccatgtattagggatattttggtaag 26898429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 169 - 242
Target Start/End: Original strand, 9216302 - 9216374
Alignment:
Q  169 ggaaaatattacatgaacaccctttattcctacaccccattgtacacctcatgtattagggatattttggtaag 242  Q
    ||||||| |||||||||||||||||||||||| | || |||||||||| |||| ||||| ||||||||||||||    
T  9216302 ggaaaatgttacatgaacaccctttattcctatatcctattgtacacc-catgcattagagatattttggtaag 9216374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 169 - 241
Target Start/End: Original strand, 40236919 - 40236991
Alignment:
Q  169 ggaaaatattacatgaacaccctttattcctacaccccattgtacacctcatgtattagggatattttggtaa 241  Q
    ||||||| |||||||||||||||||| || |||| || |||||||||| |||| |||||||| ||||||||||    
T  40236919 ggaaaatgttacatgaacaccctttaatcatacatcctattgtacaccccatgcattagggacattttggtaa 40236991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 171 - 242
Target Start/End: Complemental strand, 4638297 - 4638226
Alignment:
Q  171 aaaatattacatgaacaccctttattcctacaccccattgtacacctcatgtattagggatattttggtaag 242  Q
    ||||| ||||||||||||| ||||||| ||||| | |||||||||| ||| ||||| |||||||||||||||    
T  4638297 aaaatgttacatgaacaccttttattcatacactcaattgtacaccccatatattatggatattttggtaag 4638226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 177 - 242
Target Start/End: Original strand, 45326028 - 45326093
Alignment:
Q  177 ttacatgaacaccctttattcctacaccccattgtacacctcatgtattagggatattttggtaag 242  Q
    |||||| |||||| ||||||| |||| | ||||||||||| ||| |||||||||||||||||||||    
T  45326028 ttacataaacaccttttattcatacatcacattgtacaccccatatattagggatattttggtaag 45326093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 169 - 237
Target Start/End: Complemental strand, 5194331 - 5194263
Alignment:
Q  169 ggaaaatattacatgaacaccctttattcctacaccccattgtacacctcatgtattagggatattttg 237  Q
    ||||||| ||||||||||||| ||||||| |||||| |||||||||||  |||| ||| ||||||||||    
T  5194331 ggaaaatgttacatgaacaccatttattcatacacctcattgtacaccctatgttttaaggatattttg 5194263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 169 - 241
Target Start/End: Original strand, 31513287 - 31513359
Alignment:
Q  169 ggaaaatattacatgaacaccctttattcctacaccccattgtacacctcatgtattagggatattttggtaa 241  Q
    ||||||| |||||||||||| ||||| || ||||||| |||||| ||| |||| |||| ||||||||||||||    
T  31513287 ggaaaatgttacatgaacactctttaatcatacaccctattgtataccccatgcattaaggatattttggtaa 31513359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 169 - 242
Target Start/End: Original strand, 41861674 - 41861749
Alignment:
Q  169 ggaaaatattacatgaacaccctttattcctacaccccattgtacacctcatgtat--tagggatattttggtaag 242  Q
    ||||||| ||||||||||||||||||||| ||||||| ||| ||||||  ||||||  ||| ||||||||||||||    
T  41861674 ggaaaatgttacatgaacaccctttattcatacacccaattatacaccctatgtattatagagatattttggtaag 41861749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 170 - 241
Target Start/End: Complemental strand, 31408732 - 31408661
Alignment:
Q  170 gaaaatattacatgaacaccctttattcctacaccccattgtacacctcatgtattagggatattttggtaa 241  Q
    |||||| |||||||||||||||||| || ||||| | |||||||| | |||| |||| ||||||||||||||    
T  31408732 gaaaatgttacatgaacaccctttaatcatacactctattgtacatcccatgcattaaggatattttggtaa 31408661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 169 - 236
Target Start/End: Original strand, 39998408 - 39998475
Alignment:
Q  169 ggaaaatattacatgaacaccctttattcctacaccccattgtacacctcatgtattagggatatttt 236  Q
    ||||||| ||||||||||||  |||| || |||| || |||||||||| |||||||||||||||||||    
T  39998408 ggaaaatgttacatgaacacattttaatcatacatcctattgtacaccccatgtattagggatatttt 39998475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 185 - 242
Target Start/End: Complemental strand, 27393344 - 27393287
Alignment:
Q  185 acaccctttattcctacaccccattgtacacctcatgtattagggatattttggtaag 242  Q
    |||||||||||||||||| || |||||||||   |||||||||||||||||| |||||    
T  27393344 acaccctttattcctacatcctattgtacactctatgtattagggatatttttgtaag 27393287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 192 - 241
Target Start/End: Complemental strand, 38160656 - 38160607
Alignment:
Q  192 ttattcctacaccccattgtacacctcatgtattagggatattttggtaa 241  Q
    |||||| ||||| |||||||||||| ||||||||||||||||||| ||||    
T  38160656 ttattcttacactccattgtacaccccatgtattagggatattttagtaa 38160607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 169 - 222
Target Start/End: Complemental strand, 47279797 - 47279744
Alignment:
Q  169 ggaaaatattacatgaacaccctttattcctacaccccattgtacacctcatgt 222  Q
    |||||||||||||| || ||||||||||| |||| ||||||||||||| |||||    
T  47279797 ggaaaatattacataaataccctttattcatacatcccattgtacaccccatgt 47279744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 169 - 237
Target Start/End: Original strand, 43317443 - 43317511
Alignment:
Q  169 ggaaaatattacatgaacaccctttattcctacaccccattgtacacctcatgtattagggatattttg 237  Q
    ||||||| ||||||||||||| ||||||| |||||| ||||||||| |  |||  ||||||||||||||    
T  43317443 ggaaaatgttacatgaacaccatttattcatacacctcattgtacatcctatgctttagggatattttg 43317511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 171 - 241
Target Start/End: Complemental strand, 16180454 - 16180385
Alignment:
Q  171 aaaatattacatgaacaccctttattcctacaccccattgtacacctcatgtattagggatattttggtaa 241  Q
    ||||| |||||| |||||| |||||||||||| ||||||||||||| || ||||||   ||||||||||||    
T  16180454 aaaatgttacatcaacaccatttattcctaca-cccattgtacaccccacgtattataaatattttggtaa 16180385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 169 - 202
Target Start/End: Complemental strand, 38160694 - 38160661
Alignment:
Q  169 ggaaaatattacatgaacaccctttattcctaca 202  Q
    ||||||| ||||||||||||||||||||||||||    
T  38160694 ggaaaatgttacatgaacaccctttattcctaca 38160661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 169 - 241
Target Start/End: Complemental strand, 24280696 - 24280624
Alignment:
Q  169 ggaaaatattacatgaacaccctttattcctacaccccattgtacacctcatgtattagggatattttggtaa 241  Q
    ||||||| |||| |||||||||||||||| ||||||| ||| |||| | |||| | |||  ||||||||||||    
T  24280696 ggaaaatgttacgtgaacaccctttattcatacaccctattctacatcccatgcactagaaatattttggtaa 24280624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 169 - 241
Target Start/End: Complemental strand, 27535331 - 27535259
Alignment:
Q  169 ggaaaatattacatgaacaccctttattcctacaccccattgtacacctcatgtattagggatattttggtaa 241  Q
    ||||||| |||||||||||||||||| || ||||| | |||||||||  ||||| |||  || ||||||||||    
T  27535331 ggaaaatgttacatgaacaccctttaatcatacactctattgtacactccatgtgttaaagacattttggtaa 27535259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 62; Significance: 7e-27; HSPs: 32)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 169 - 242
Target Start/End: Original strand, 27550309 - 27550382
Alignment:
Q  169 ggaaaatattacatgaacaccctttattcctacaccccattgtacacctcatgtattagggatattttggtaag 242  Q
    ||||||| |||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||    
T  27550309 ggaaaatgttacatgaacaccctttatttctacactccattgtacacctcatgtattagggatattttggtaag 27550382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 169 - 242
Target Start/End: Complemental strand, 1771366 - 1771293
Alignment:
Q  169 ggaaaatattacatgaacaccctttattcctacaccccattgtacacctcatgtattagggatattttggtaag 242  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||| ||||    
T  1771366 ggaaaatgttacatgaacaccctttattcctacaccccattgtacaccccatgtattagagatattttgataag 1771293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 171 - 242
Target Start/End: Complemental strand, 43514784 - 43514713
Alignment:
Q  171 aaaatattacatgaacaccctttattcctacaccccattgtacacctcatgtattagggatattttggtaag 242  Q
    ||||| ||||||||||||||||||||||||||| ||||||||||| ||||||||||||| ||||||||||||    
T  43514784 aaaatgttacatgaacaccctttattcctacactccattgtacacttcatgtattagggttattttggtaag 43514713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 169 - 242
Target Start/End: Original strand, 25051693 - 25051766
Alignment:
Q  169 ggaaaatattacatgaacaccctttattcctacaccccattgtacacctcatgtattagggatattttggtaag 242  Q
    ||||||| | |||||||||| |||||||||||||||||||||||||||  ||||||||||||||||||||||||    
T  25051693 ggaaaatgtcacatgaacacactttattcctacaccccattgtacaccctatgtattagggatattttggtaag 25051766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 169 - 242
Target Start/End: Original strand, 12496956 - 12497029
Alignment:
Q  169 ggaaaatattacatgaacaccctttattcctacaccccattgtacacctcatgtattagggatattttggtaag 242  Q
    ||||||| ||| ||||||||||||||||||||||| |||||||||| | |||||||||| ||||||||||||||    
T  12496956 ggaaaatgttatatgaacaccctttattcctacactccattgtacatcccatgtattagagatattttggtaag 12497029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 169 - 242
Target Start/End: Original strand, 27864564 - 27864637
Alignment:
Q  169 ggaaaatattacatgaacaccctttattcctacaccccattgtacacctcatgtattagggatattttggtaag 242  Q
    ||||||| |||||| |||||| ||||||| |||| ||||||||||||| |||||||||||||||||||||||||    
T  27864564 ggaaaatgttacataaacaccatttattcatacatcccattgtacaccccatgtattagggatattttggtaag 27864637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 169 - 242
Target Start/End: Complemental strand, 28982922 - 28982849
Alignment:
Q  169 ggaaaatattacatgaacaccctttattcctacaccccattgtacacctcatgtattagggatattttggtaag 242  Q
    ||||||| |||||||||||||||||||| |||||||| |||||||| | ||| |||||||||||||||||||||    
T  28982922 ggaaaatgttacatgaacaccctttatttctacaccctattgtacatcccatatattagggatattttggtaag 28982849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 169 - 242
Target Start/End: Original strand, 33703141 - 33703214
Alignment:
Q  169 ggaaaatattacatgaacaccctttattcctacaccccattgtacacctcatgtattagggatattttggtaag 242  Q
    ||||||| |||||||||||||||||||| ||||| |  |||||||||| |||||||||||||||||||||||||    
T  33703141 ggaaaatgttacatgaacaccctttatttctacatcttattgtacaccccatgtattagggatattttggtaag 33703214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 178 - 242
Target Start/End: Original strand, 39631109 - 39631174
Alignment:
Q  178 tacatgaacacccttt-attcctacaccccattgtacacctcatgtattagggatattttggtaag 242  Q
    ||||||||| |||||| ||||||||||| |||||||||||||||||||||||||||||||||||||    
T  39631109 tacatgaacccccttttattcctacacctcattgtacacctcatgtattagggatattttggtaag 39631174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 169 - 242
Target Start/End: Complemental strand, 55966446 - 55966373
Alignment:
Q  169 ggaaaatattacatgaacaccctttattcctacaccccattgtacacctcatgtattagggatattttggtaag 242  Q
    ||||||| |||||| |||||||||||||| |||| ||||||||||| | |||||||||||||||||||||||||    
T  55966446 ggaaaatgttacataaacaccctttattcatacatcccattgtacatcccatgtattagggatattttggtaag 55966373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 171 - 241
Target Start/End: Complemental strand, 27893940 - 27893870
Alignment:
Q  171 aaaatattacatgaacaccctttattcctacaccccattgtacacctcatgtattagggatattttggtaa 241  Q
    ||||| |||||| |||||| ||||||| |||| ||||||||||||| ||||||||||||||||||||||||    
T  27893940 aaaatgttacataaacaccatttattcatacatcccattgtacaccccatgtattagggatattttggtaa 27893870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 169 - 242
Target Start/End: Complemental strand, 27316813 - 27316740
Alignment:
Q  169 ggaaaatattacatgaacaccctttattcctacaccccattgtacacctcatgtattagggatattttggtaag 242  Q
    ||||||| ||| | |||||||||||||||||||||| |||| |||||| ||||||||| |||||||||||||||    
T  27316813 ggaaaatgttaaacgaacaccctttattcctacacctcattatacaccccatgtattaaggatattttggtaag 27316740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 169 - 242
Target Start/End: Original strand, 35017733 - 35017805
Alignment:
Q  169 ggaaaatattacatgaacaccctttattcctacaccccattgtacacctcatgtattagggatattttggtaag 242  Q
    ||||||| |||||||||||||||||||||||| | | ||||||||||| |||||| ||||||||||||||||||    
T  35017733 ggaaaatgttacatgaacaccctttattcctatatctcattgtacaccccatgta-tagggatattttggtaag 35017805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 178 - 242
Target Start/End: Complemental strand, 43949893 - 43949828
Alignment:
Q  178 tacatgaacacccttt-attcctacaccccattgtacacctcatgtattagggatattttggtaag 242  Q
    |||||||||||||||| |||||| |||| ||||||||||| |||||||||||||||||||||||||    
T  43949893 tacatgaacacccttttattcctgcacctcattgtacaccccatgtattagggatattttggtaag 43949828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 172 - 242
Target Start/End: Complemental strand, 23204875 - 23204805
Alignment:
Q  172 aaatattacatgaacaccctttattcctacaccccattgtacacctcatgtattagggatattttggtaag 242  Q
    |||| |||||||||||| ||||||||||||| ||||||||||| |  |||||||||||||||||| |||||    
T  23204875 aaatgttacatgaacactctttattcctacatcccattgtacatcctatgtattagggatatttttgtaag 23204805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 169 - 242
Target Start/End: Original strand, 23035980 - 23036053
Alignment:
Q  169 ggaaaatattacatgaacaccctttattcctacaccccattgtacacctcatgtattagggatattttggtaag 242  Q
    ||||||| ||||||||||  ||||||||||||||||| ||||||||||  || ||||||||||||||| |||||    
T  23035980 ggaaaatgttacatgaacctcctttattcctacaccctattgtacaccctatatattagggatatttttgtaag 23036053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 169 - 241
Target Start/End: Original strand, 711960 - 712032
Alignment:
Q  169 ggaaaatattacatgaacaccctttattcctacaccccattgtacacctcatgtattagggatattttggtaa 241  Q
    ||||||| |||||||||||||||||| || ||||||| ||||||||||  ||| |||| ||||||||||||||    
T  711960 ggaaaatgttacatgaacaccctttaatcatacaccctattgtacaccctatgcattaaggatattttggtaa 712032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 169 - 241
Target Start/End: Complemental strand, 17619252 - 17619180
Alignment:
Q  169 ggaaaatattacatgaacaccctttattcctacaccccattgtacacctcatgtattagggatattttggtaa 241  Q
    ||||||| ||||||||||||| |||| || ||||||| |||||||||| |||| |||| ||||||||||||||    
T  17619252 ggaaaatgttacatgaacaccttttaatcatacaccctattgtacaccccatgcattaaggatattttggtaa 17619180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 169 - 237
Target Start/End: Original strand, 28988473 - 28988541
Alignment:
Q  169 ggaaaatattacatgaacaccctttattcctacaccccattgtacacctcatgtattagggatattttg 237  Q
    ||||||| ||||||||||||||||||||| |||||| ||||||||||| |||| | |||||| ||||||    
T  28988473 ggaaaatgttacatgaacaccctttattcatacacctcattgtacaccccatgcactagggacattttg 28988541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 171 - 241
Target Start/End: Complemental strand, 3756344 - 3756274
Alignment:
Q  171 aaaatattacatgaacaccctttattcctacaccccattgtacacctcatgtattagggatattttggtaa 241  Q
    ||||| |||||||||||||||||| || ||||||| |||||||||| |||| |||| ||||||||| ||||    
T  3756344 aaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatgcattaaggatattttagtaa 3756274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 169 - 242
Target Start/End: Complemental strand, 48463550 - 48463477
Alignment:
Q  169 ggaaaatattacatgaacaccctttattcctacaccccattgtacacctcatgtattagggatattttggtaag 242  Q
    ||||||| |||||| |||||| ||||||| ||||   ||||||||| | |||||||||||||||||||||||||    
T  48463550 ggaaaatgttacataaacaccatttattcatacatttcattgtacatcccatgtattagggatattttggtaag 48463477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 170 - 242
Target Start/End: Original strand, 41878407 - 41878479
Alignment:
Q  170 gaaaatattacatgaacaccctttattcctacaccccattgtacacctcatgtattagggatattttggtaag 242  Q
    |||||| |||||||||||| |||||||| |||||| |||||||||||  ||  ||||||||||||||| ||||    
T  41878407 gaaaatgttacatgaacactctttattcatacacctcattgtacaccctatccattagggatattttgataag 41878479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 169 - 241
Target Start/End: Complemental strand, 45490413 - 45490341
Alignment:
Q  169 ggaaaatattacatgaacaccctttattcctacaccccattgtacacctcatgtattagggatattttggtaa 241  Q
    ||||||| ||||||||||||  ||||||  |||| || |||||||||||||||||||||||||| ||| ||||    
T  45490413 ggaaaatgttacatgaacacattttatttatacatccaattgtacacctcatgtattagggatactttagtaa 45490341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 169 - 241
Target Start/End: Complemental strand, 55272476 - 55272404
Alignment:
Q  169 ggaaaatattacatgaacaccctttattcctacaccccattgtacacctcatgtattagggatattttggtaa 241  Q
    ||||||| ||||||||||| |||||| || ||||| | |||||||||| |||| |||| ||||||||||||||    
T  55272476 ggaaaatgttacatgaacatcctttaatcatacactctattgtacaccccatgcattaaggatattttggtaa 55272404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 171 - 242
Target Start/End: Original strand, 43735744 - 43735815
Alignment:
Q  171 aaaatattacatgaacaccctttattcctacaccccattgtacacctcatgtattagggatattttggtaag 242  Q
    ||||||||||||||||| |||||||||||||| | |||| ||||   |||||||||| ||||||||| ||||    
T  43735744 aaaatattacatgaacatcctttattcctacatctcattatacattccatgtattagagatattttgataag 43735815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 169 - 242
Target Start/End: Original strand, 21687006 - 21687079
Alignment:
Q  169 ggaaaatattacatgaacaccctttattcctacaccccattgtacacctcatgtattagggatattttggtaag 242  Q
    ||||||| ||||||||||| ||||||||  ||||||||||| |||| || |||||||||  ||||||| |||||    
T  21687006 ggaaaatgttacatgaacatcctttatttttacaccccattatacatcttatgtattagaaatattttagtaag 21687079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 169 - 241
Target Start/End: Complemental strand, 960970 - 960898
Alignment:
Q  169 ggaaaatattacatgaacaccctttattcctacaccccattgtacacctcatgtattagggatattttggtaa 241  Q
    ||||||| |||||||||||||||||| || ||||| | ||||||||||  ||  |||||||| ||||||||||    
T  960970 ggaaaatgttacatgaacaccctttaatcatacactctattgtacaccctatacattagggacattttggtaa 960898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 169 - 241
Target Start/End: Original strand, 32728357 - 32728429
Alignment:
Q  169 ggaaaatattacatgaacaccctttattcctacaccccattgtacacctcatgtattagggatattttggtaa 241  Q
    ||||||| ||||||||||| |||||| || ||||||| |||||||||| |||| |||| ||| ||||| ||||    
T  32728357 ggaaaatgttacatgaacatcctttaatcatacaccctattgtacaccccatgcattaaggacattttagtaa 32728429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 171 - 242
Target Start/End: Original strand, 31680904 - 31680975
Alignment:
Q  171 aaaatattacatgaacaccctttattcctacaccccattgtacacctcatgtattagggatattttggtaag 242  Q
    ||||| |||| | |||||| ||||||| ||||  |||||||||||| | | |||||||||||||||||||||    
T  31680904 aaaatgttacgtaaacaccatttattcatacattccattgtacaccccgtatattagggatattttggtaag 31680975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 171 - 241
Target Start/End: Original strand, 35037007 - 35037077
Alignment:
Q  171 aaaatattacatgaacaccctttattcctacaccccattgtacacctcatgtattagggatattttggtaa 241  Q
    ||||| |||||||| |||||||||  | ||||| | |||||||||| |||| |||| ||||||||||||||    
T  35037007 aaaatgttacatgagcaccctttaaccatacactctattgtacaccccatgcattaaggatattttggtaa 35037077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 171 - 241
Target Start/End: Complemental strand, 41327641 - 41327571
Alignment:
Q  171 aaaatattacatgaacaccctttattcctacaccccattgtacacctcatgtattagggatattttggtaa 241  Q
    ||||| ||||||  |||||||||||||  |||||||||||||||||| ||| | || ||| ||||||||||    
T  41327641 aaaatgttacatagacaccctttattcacacaccccattgtacaccttatgcactacggacattttggtaa 41327571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 177 - 241
Target Start/End: Complemental strand, 48435671 - 48435607
Alignment:
Q  177 ttacatgaacaccctttattcctacaccccattgtacacctcatgtattagggatattttggtaa 241  Q
    ||||||||||||| |||| ||  |||||| |||||||||| |||| |||||||| || |||||||    
T  48435671 ttacatgaacaccatttaatcacacaccctattgtacaccccatgcattagggacatattggtaa 48435607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 62; Significance: 7e-27; HSPs: 26)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 169 - 242
Target Start/End: Original strand, 25413681 - 25413754
Alignment:
Q  169 ggaaaatattacatgaacaccctttattcctacaccccattgtacacctcatgtattagggatattttggtaag 242  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||    
T  25413681 ggaaaatgttacatgaacaccctttattcctacaccccattgtacaccttatgtattagggatatttttgtaag 25413754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 169 - 242
Target Start/End: Original strand, 42100688 - 42100761
Alignment:
Q  169 ggaaaatattacatgaacaccctttattcctacaccccattgtacacctcatgtattagggatattttggtaag 242  Q
    ||||||| |||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||    
T  42100688 ggaaaatgttacatgaacaccctttattcctacacctcattgtacaccccatgtattagggatattttggtaag 42100761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 169 - 242
Target Start/End: Original strand, 40808865 - 40808938
Alignment:
Q  169 ggaaaatattacatgaacaccctttattcctacaccccattgtacacctcatgtattagggatattttggtaag 242  Q
    ||||||| |||||| |||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  40808865 ggaaaatgttacatcaacaccatttattcctacaccccattgtacaccccatgtattagggatattttggtaag 40808938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 169 - 242
Target Start/End: Original strand, 46941053 - 46941126
Alignment:
Q  169 ggaaaatattacatgaacaccctttattcctacaccccattgtacacctcatgtattagggatattttggtaag 242  Q
    ||||||| |||||||||||||||||||||||||| | ||||||||||| |||||||||||||||||||||||||    
T  46941053 ggaaaatgttacatgaacaccctttattcctacatctcattgtacaccccatgtattagggatattttggtaag 46941126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 170 - 242
Target Start/End: Original strand, 54237097 - 54237169
Alignment:
Q  170 gaaaatattacatgaacaccctttattcctacaccccattgtacacctcatgtattagggatattttggtaag 242  Q
    |||||| |||||||||||||||||||||||||| |||||||||||||  ||||||||||||||||||||||||    
T  54237097 gaaaatgttacatgaacaccctttattcctacatcccattgtacaccctatgtattagggatattttggtaag 54237169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 169 - 242
Target Start/End: Complemental strand, 24688502 - 24688429
Alignment:
Q  169 ggaaaatattacatgaacaccctttattcctacaccccattgtacacctcatgtattagggatattttggtaag 242  Q
    ||||||| |||||||||||||||||||| |||||| ||||||||||||  ||||||||||||||||||||||||    
T  24688502 ggaaaatgttacatgaacaccctttatttctacactccattgtacaccctatgtattagggatattttggtaag 24688429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 169 - 242
Target Start/End: Complemental strand, 45127028 - 45126955
Alignment:
Q  169 ggaaaatattacatgaacaccctttattcctacaccccattgtacacctcatgtattagggatattttggtaag 242  Q
    ||||||| |||||| |||||||||||||| |||| ||||||||||||| |||||||||||||||||||||||||    
T  45127028 ggaaaatgttacataaacaccctttattcatacatcccattgtacaccccatgtattagggatattttggtaag 45126955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 169 - 242
Target Start/End: Complemental strand, 54246248 - 54246175
Alignment:
Q  169 ggaaaatattacatgaacaccctttattcctacaccccattgtacacctcatgtattagggatattttggtaag 242  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||  ||||||||| |||||||| |||||    
T  54246248 ggaaaatgttacatgaacaccctttattcctacaccccattgtacaccctatgtattagagatatttttgtaag 54246175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 170 - 242
Target Start/End: Complemental strand, 42394518 - 42394446
Alignment:
Q  170 gaaaatattacatgaacaccctttattcctacaccccattgtacacctcatgtattagggatattttggtaag 242  Q
    |||||| ||||||||||||||||||||||||||  ||||||||||||  ||||||||||||||||||||||||    
T  42394518 gaaaatgttacatgaacaccctttattcctacattccattgtacaccctatgtattagggatattttggtaag 42394446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 169 - 242
Target Start/End: Complemental strand, 47191125 - 47191053
Alignment:
Q  169 ggaaaatattacatgaacaccctttattcctacaccccattgtacacctcatgtattagggatattttggtaag 242  Q
    ||||||| |||||||||||||||||||||||||||| ||||||||||| |||||||||| ||||||||| ||||    
T  47191125 ggaaaatgttacatgaacaccctttattcctacacctcattgtacacc-catgtattagagatattttgataag 47191053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 169 - 241
Target Start/End: Complemental strand, 4190365 - 4190293
Alignment:
Q  169 ggaaaatattacatgaacaccctttattcctacaccccattgtacacctcatgtattagggatattttggtaa 241  Q
    ||||||| |||||||||||||||||| || ||||||| ||||||||||| ||||||||| |||||||||||||    
T  4190365 ggaaaatgttacatgaacaccctttaatcatacaccctattgtacaccttatgtattagagatattttggtaa 4190293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 171 - 242
Target Start/End: Original strand, 27748565 - 27748636
Alignment:
Q  171 aaaatattacatgaacaccctttattcctacaccccattgtacacctcatgtattagggatattttggtaag 242  Q
    ||||| ||||||||||||| ||||||| |||||| |||| ||||||| ||||||||||||||||||||||||    
T  27748565 aaaatgttacatgaacaccttttattcatacacctcattatacaccttatgtattagggatattttggtaag 27748636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 169 - 242
Target Start/End: Original strand, 36150130 - 36150203
Alignment:
Q  169 ggaaaatattacatgaacaccctttattcctacaccccattgtacacctcatgtattagggatattttggtaag 242  Q
    ||||||| ||||||||| ||||||||||| ||||||||||| ||||||  |||||| |||||||||||||||||    
T  36150130 ggaaaatgttacatgaataccctttattcatacaccccattatacaccctatgtatcagggatattttggtaag 36150203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 170 - 242
Target Start/End: Original strand, 40480750 - 40480822
Alignment:
Q  170 gaaaatattacatgaacaccctttattcctacaccccattgtacacctcatgtattagggatattttggtaag 242  Q
    |||||| ||||||||||||||||||||| ||  |||||||||||| |  ||||||||||||||||||||||||    
T  40480750 gaaaatgttacatgaacaccctttattcatatgccccattgtacatcctatgtattagggatattttggtaag 40480822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 171 - 228
Target Start/End: Original strand, 1078229 - 1078286
Alignment:
Q  171 aaaatattacatgaacaccctttattcctacaccccattgtacacctcatgtattagg 228  Q
    ||||| ||||||||||||||||||||||| |||| |||||||||||| ||||||||||    
T  1078229 aaaatgttacatgaacaccctttattcctgcacctcattgtacacctaatgtattagg 1078286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 169 - 242
Target Start/End: Complemental strand, 53273784 - 53273711
Alignment:
Q  169 ggaaaatattacatgaacaccctttattcctacaccccattgtacacctcatgtattagggatattttggtaag 242  Q
    ||||||| ||| ||||||| | |||||||||| ||| ||||||||| | |||||||||||||||||||||||||    
T  53273784 ggaaaatgttatatgaacatcatttattcctatacctcattgtacatcccatgtattagggatattttggtaag 53273711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 169 - 241
Target Start/End: Original strand, 9434124 - 9434196
Alignment:
Q  169 ggaaaatattacatgaacaccctttattcctacaccccattgtacacctcatgtattagggatattttggtaa 241  Q
    ||||||| |||||||||||||||||| || ||||| | |||||||||| |||| |||||||| ||||||||||    
T  9434124 ggaaaatgttacatgaacaccctttaatcatacactctattgtacaccccatgcattagggacattttggtaa 9434196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 169 - 241
Target Start/End: Complemental strand, 10457992 - 10457920
Alignment:
Q  169 ggaaaatattacatgaacaccctttattcctacaccccattgtacacctcatgtattagggatattttggtaa 241  Q
    ||||||| ||||||||||||| |||| || ||||||| |||||||||| |||| |||| ||||||||||||||    
T  10457992 ggaaaatgttacatgaacaccttttaatcatacaccctattgtacaccccatgcattaaggatattttggtaa 10457920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 169 - 241
Target Start/End: Original strand, 51757593 - 51757665
Alignment:
Q  169 ggaaaatattacatgaacaccctttattcctacaccccattgtacacctcatgtattagggatattttggtaa 241  Q
    |||||||||||||| ||||||||||| || ||||||| ||||||||||||||| |||| ||| ||||| ||||    
T  51757593 ggaaaatattacataaacaccctttaatcatacaccctattgtacacctcatgcattatggacattttagtaa 51757665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 171 - 242
Target Start/End: Complemental strand, 53581956 - 53581885
Alignment:
Q  171 aaaatattacatgaacaccctttattcctacaccccattgtacacctcatgtattagggatattttggtaag 242  Q
    ||||| |||||||||||| |||||||| ||||| |||||||||| |  ||||||||||||||||||| ||||    
T  53581956 aaaatgttacatgaacactctttattcatacactccattgtacatcctatgtattagggatattttgataag 53581885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 169 - 241
Target Start/End: Complemental strand, 52628077 - 52628005
Alignment:
Q  169 ggaaaatattacatgaacaccctttattcctacaccccattgtacacctcatgtattagggatattttggtaa 241  Q
    ||||||| |||| ||||||||||||| || |||| || ||||||||||||||| |||| | ||||||||||||    
T  52628077 ggaaaatgttacgtgaacaccctttaatcatacatcctattgtacacctcatgcattaagtatattttggtaa 52628005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 169 - 236
Target Start/End: Original strand, 34791829 - 34791896
Alignment:
Q  169 ggaaaatattacatgaacaccctttattcctacaccccattgtacacctcatgtattagggatatttt 236  Q
    ||||||| |||||||||||||||||| || ||||||  |||||| |||||||| |||||||| |||||    
T  34791829 ggaaaatgttacatgaacaccctttaatcatacaccatattgtaaacctcatgcattagggacatttt 34791896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 169 - 241
Target Start/End: Original strand, 25996268 - 25996340
Alignment:
Q  169 ggaaaatattacatgaacaccctttattcctacaccccattgtacacctcatgtattagggatattttggtaa 241  Q
    ||||||| |||||||||||||||||| || |||| |  |||||||||| ||| ||||| ||| ||||||||||    
T  25996268 ggaaaatgttacatgaacaccctttaatcatacatcttattgtacaccccatatattaaggacattttggtaa 25996340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 169 - 205
Target Start/End: Original strand, 52629840 - 52629876
Alignment:
Q  169 ggaaaatattacatgaacaccctttattcctacaccc 205  Q
    ||||||||||||||||||||| |||||||||||||||    
T  52629840 ggaaaatattacatgaacaccttttattcctacaccc 52629876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 184 - 241
Target Start/End: Original strand, 51249323 - 51249380
Alignment:
Q  184 aacaccctttattcctacaccccattgtacacctcatgtattagggatattttggtaa 241  Q
    ||||||||||||||   || |||||| ||||||||||| |||| ||||||||||||||    
T  51249323 aacaccctttattcacccaacccattatacacctcatgcattaaggatattttggtaa 51249380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 181 - 241
Target Start/End: Complemental strand, 29558322 - 29558262
Alignment:
Q  181 atgaacaccctttattcctacaccccattgtacacctcatgtattagggatattttggtaa 241  Q
    ||||||||||||||||| |||| | |||||||||||  || ||||||| |||| |||||||    
T  29558322 atgaacaccctttattcatacatctcattgtacaccctatatattaggaatatattggtaa 29558262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 62; Significance: 7e-27; HSPs: 21)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 169 - 242
Target Start/End: Complemental strand, 43571186 - 43571113
Alignment:
Q  169 ggaaaatattacatgaacaccctttattcctacaccccattgtacacctcatgtattagggatattttggtaag 242  Q
    ||||||| |||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||    
T  43571186 ggaaaatgttacatgaacaccctttattcctacacctcattgtacaccccatgtattagggatattttggtaag 43571113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 169 - 242
Target Start/End: Original strand, 5489776 - 5489849
Alignment:
Q  169 ggaaaatattacatgaacaccctttattcctacaccccattgtacacctcatgtattagggatattttggtaag 242  Q
    ||||||| |||||||||||||||||||||||||| |||||||||||||  ||||||||||||||||||||||||    
T  5489776 ggaaaatgttacatgaacaccctttattcctacatcccattgtacaccctatgtattagggatattttggtaag 5489849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 169 - 242
Target Start/End: Complemental strand, 48499062 - 48498989
Alignment:
Q  169 ggaaaatattacatgaacaccctttattcctacaccccattgtacacctcatgtattagggatattttggtaag 242  Q
    ||||||| |||||||||||| ||||||| |||||| ||||||||||||||||||||||||||||||||||||||    
T  48499062 ggaaaatgttacatgaacactctttatttctacactccattgtacacctcatgtattagggatattttggtaag 48498989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 169 - 242
Target Start/End: Complemental strand, 24769599 - 24769526
Alignment:
Q  169 ggaaaatattacatgaacaccctttattcctacaccccattgtacacctcatgtattagggatattttggtaag 242  Q
    ||||||| || |||||||||| |||||| |||||| |||||||||||| |||||||||||||||||||||||||    
T  24769599 ggaaaatgtttcatgaacaccttttatttctacactccattgtacaccccatgtattagggatattttggtaag 24769526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 169 - 242
Target Start/End: Complemental strand, 50448360 - 50448287
Alignment:
Q  169 ggaaaatattacatgaacaccctttattcctacaccccattgtacacctcatgtattagggatattttggtaag 242  Q
    ||||||| |||||||||||| ||||||| |||||| ||||||||||||| |||||||||||||||||| |||||    
T  50448360 ggaaaatgttacatgaacactctttatttctacactccattgtacaccttatgtattagggatatttttgtaag 50448287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 169 - 237
Target Start/End: Complemental strand, 750405 - 750337
Alignment:
Q  169 ggaaaatattacatgaacaccctttattcctacaccccattgtacacctcatgtattagggatattttg 237  Q
    ||||||| |||| |||||||||||  |||||||||||||||||||||| ||||||| ||||||||||||    
T  750405 ggaaaatgttacgtgaacacccttatttcctacaccccattgtacaccccatgtatcagggatattttg 750337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 169 - 241
Target Start/End: Original strand, 37814778 - 37814850
Alignment:
Q  169 ggaaaatattacatgaacaccctttattcctacaccccattgtacacctcatgtattagggatattttggtaa 241  Q
    ||||||| |||||| |||||||||||||| |||| | ||||||||||| ||||||||| ||||||||||||||    
T  37814778 ggaaaatgttacataaacaccctttattcatacatctcattgtacaccccatgtattaaggatattttggtaa 37814850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 169 - 241
Target Start/End: Original strand, 44112677 - 44112749
Alignment:
Q  169 ggaaaatattacatgaacaccctttattcctacaccccattgtacacctcatgtattagggatattttggtaa 241  Q
    ||||||| |||||||||||||||||| || ||||||| |||||||||| |||| |||||||| ||||||||||    
T  44112677 ggaaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatgcattagggacattttggtaa 44112749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 169 - 241
Target Start/End: Original strand, 48119628 - 48119700
Alignment:
Q  169 ggaaaatattacatgaacaccctttattcctacaccccattgtacacctcatgtattagggatattttggtaa 241  Q
    ||||||| |||||||||||||||||| || ||||||| |||||||||| |||| |||| ||||||||||||||    
T  48119628 ggaaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatgcattaaggatattttggtaa 48119700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 169 - 241
Target Start/End: Original strand, 35003294 - 35003366
Alignment:
Q  169 ggaaaatattacatgaacaccctttattcctacaccccattgtacacctcatgtattagggatattttggtaa 241  Q
    ||||||| |||||||||||||||||| || ||||||| |||||||||| |||  |||| ||||||||||||||    
T  35003294 ggaaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatacattaaggatattttggtaa 35003366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 171 - 242
Target Start/End: Original strand, 7447828 - 7447898
Alignment:
Q  171 aaaatattacatgaacaccctttattcctacaccccattgtacacctcatgtattagggatattttggtaag 242  Q
    ||||| ||||||||||| |||||||||||||| ||||||||||||| |||||||||  ||||||||| ||||    
T  7447828 aaaatgttacatgaacatcctttattcctacatcccattgtacacc-catgtattacagatattttgataag 7447898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 178 - 242
Target Start/End: Original strand, 4401336 - 4401401
Alignment:
Q  178 tacatgaacacccttt-attcctacaccccattgtacacctcatgtattagggatattttggtaag 242  Q
    ||||||||||| |||| ||||||||||  ||||||||||| |||||||||| ||||||||||||||    
T  4401336 tacatgaacactcttttattcctacacttcattgtacaccccatgtattagagatattttggtaag 4401401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 169 - 226
Target Start/End: Original strand, 14427347 - 14427404
Alignment:
Q  169 ggaaaatattacatgaacaccctttattcctacaccccattgtacacctcatgtatta 226  Q
    ||||||| |||||||||||||||||| || ||||||| ||||||||||||||| ||||    
T  14427347 ggaaaatgttacatgaacaccctttaatcatacaccctattgtacacctcatgcatta 14427404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 169 - 241
Target Start/End: Complemental strand, 23989624 - 23989551
Alignment:
Q  169 ggaaaatattacatgaacacccttt-attcctacaccccattgtacacctcatgtattagggatattttggtaa 241  Q
    ||||||| ||||||||||||||||| |||| ||||| | |||||| |||  |||||||||||||||||||||||    
T  23989624 ggaaaatgttacatgaacacccttttattcatacactcaattgtataccctatgtattagggatattttggtaa 23989551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 169 - 241
Target Start/End: Original strand, 38335918 - 38335990
Alignment:
Q  169 ggaaaatattacatgaacaccctttattcctacaccccattgtacacctcatgtattagggatattttggtaa 241  Q
    ||||||| |||||||||||||||||| || ||||||  |||||||| | |||| |||| ||||||||||||||    
T  38335918 ggaaaatgttacatgaacaccctttaatcatacaccttattgtacatcccatgcattaaggatattttggtaa 38335990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 169 - 241
Target Start/End: Original strand, 41065153 - 41065225
Alignment:
Q  169 ggaaaatattacatgaacaccctttattcctacaccccattgtacacctcatgtattagggatattttggtaa 241  Q
    ||||||| |||||||||||||||||| || |||||||  ||||||||| |||| |||||||  ||||||||||    
T  41065153 ggaaaatgttacatgaacaccctttaatcatacaccctgttgtacaccccatgcattaggggcattttggtaa 41065225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 171 - 242
Target Start/End: Complemental strand, 2497660 - 2497589
Alignment:
Q  171 aaaatattacatgaacaccctttattcctacaccccattgtacacctcatgtattagggatattttggtaag 242  Q
    ||||| |||||| |||||| ||||||| ||||  |||||||||||| ||| ||||| |||||||||||||||    
T  2497660 aaaatgttacataaacaccatttattcatacattccattgtacaccccatatattaaggatattttggtaag 2497589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 169 - 237
Target Start/End: Complemental strand, 35000213 - 35000145
Alignment:
Q  169 ggaaaatattacatgaacaccctttattcctacaccccattgtacacctcatgtattagggatattttg 237  Q
    ||||||| ||||||||||||| |||| || ||||| | |||||| || |||||||||||||| ||||||    
T  35000213 ggaaaatgttacatgaacaccttttaatcatacactctattgtatacttcatgtattagggacattttg 35000145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 169 - 241
Target Start/End: Complemental strand, 38113295 - 38113223
Alignment:
Q  169 ggaaaatattacatgaacaccctttattcctacaccccattgtacacctcatgtattagggatattttggtaa 241  Q
    ||||||| ||| |||||||||||||| || ||||||| |||||||||| |||| ||||  || ||||||||||    
T  38113295 ggaaaatgttatatgaacaccctttaatcatacaccctattgtacaccccatgcattaatgacattttggtaa 38113223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 169 - 241
Target Start/End: Complemental strand, 45639832 - 45639760
Alignment:
Q  169 ggaaaatattacatgaacaccctttattcctacaccccattgtacacctcatgtattagggatattttggtaa 241  Q
    ||||||| |||||||||||| ||||| || |||| || |||||||||| |||  |||| ||||||||||||||    
T  45639832 ggaaaatgttacatgaacactctttaatcatacatcctattgtacaccccatacattaaggatattttggtaa 45639760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 169 - 241
Target Start/End: Original strand, 46168383 - 46168455
Alignment:
Q  169 ggaaaatattacatgaacaccctttattcctacaccccattgtacacctcatgtattagggatattttggtaa 241  Q
    ||||||| |||||||||||||||||| || || | || ||||||||||  ||| |||| ||||||||||||||    
T  46168383 ggaaaatgttacatgaacaccctttaatcatatatcctattgtacacccaatgcattaaggatattttggtaa 46168455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 60; Significance: 1e-25; HSPs: 24)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 171 - 242
Target Start/End: Complemental strand, 30912660 - 30912589
Alignment:
Q  171 aaaatattacatgaacaccctttattcctacaccccattgtacacctcatgtattagggatattttggtaag 242  Q
    ||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||    
T  30912660 aaaatgttacatgaacaccctttattcctacaccccattgtacacttcatgtattaggggtattttggtaag 30912589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 169 - 242
Target Start/End: Complemental strand, 2166063 - 2165990
Alignment:
Q  169 ggaaaatattacatgaacaccctttattcctacaccccattgtacacctcatgtattagggatattttggtaag 242  Q
    ||||||||||||||||||||| |||||||||||||||||||||| ||| |||||||||| ||||||||||||||    
T  2166063 ggaaaatattacatgaacaccatttattcctacaccccattgtataccccatgtattagagatattttggtaag 2165990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 169 - 242
Target Start/End: Original strand, 11582766 - 11582839
Alignment:
Q  169 ggaaaatattacatgaacaccctttattcctacaccccattgtacacctcatgtattagggatattttggtaag 242  Q
    ||||||| |||||||||||||||||||||||||| |||||||||||||  ||||||||||||||||||||||||    
T  11582766 ggaaaatgttacatgaacaccctttattcctacatcccattgtacaccctatgtattagggatattttggtaag 11582839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 169 - 242
Target Start/End: Original strand, 29705362 - 29705435
Alignment:
Q  169 ggaaaatattacatgaacaccctttattcctacaccccattgtacacctcatgtattagggatattttggtaag 242  Q
    ||||||| |||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||| ||||    
T  29705362 ggaaaatgttacatgaacaccctttatttctacaccccattgtacaccccatgtattagggatattttgataag 29705435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 169 - 242
Target Start/End: Complemental strand, 36743583 - 36743510
Alignment:
Q  169 ggaaaatattacatgaacaccctttattcctacaccccattgtacacctcatgtattagggatattttggtaag 242  Q
    ||||||| |||||||||||||||||||||||||| |||||||||||||  ||||||||||||||||||||||||    
T  36743583 ggaaaatgttacatgaacaccctttattcctacatcccattgtacaccctatgtattagggatattttggtaag 36743510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 171 - 242
Target Start/End: Original strand, 42295197 - 42295268
Alignment:
Q  171 aaaatattacatgaacaccctttattcctacaccccattgtacacctcatgtattagggatattttggtaag 242  Q
    ||||| |||||||||||||||||||||||||||| ||||||||||  |||||||||||||||||||||||||    
T  42295197 aaaatgttacatgaacaccctttattcctacacctcattgtacactccatgtattagggatattttggtaag 42295268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 171 - 242
Target Start/End: Original strand, 42699259 - 42699330
Alignment:
Q  171 aaaatattacatgaacaccctttattcctacaccccattgtacacctcatgtattagggatattttggtaag 242  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||| |||||    
T  42699259 aaaatgttacatgaacaccctttattcctacaccccattgtacaccttatgtattatggatatttttgtaag 42699330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 169 - 242
Target Start/End: Original strand, 2546996 - 2547069
Alignment:
Q  169 ggaaaatattacatgaacaccctttattcctacaccccattgtacacctcatgtattagggatattttggtaag 242  Q
    ||||||| |||||||||||| ||||||| |||||| |||||||||||||||||||||||||||||||| |||||    
T  2546996 ggaaaatgttacatgaacactctttatttctacactccattgtacacctcatgtattagggatattttagtaag 2547069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 169 - 242
Target Start/End: Complemental strand, 30660842 - 30660769
Alignment:
Q  169 ggaaaatattacatgaacaccctttattcctacaccccattgtacacctcatgtattagggatattttggtaag 242  Q
    ||||||| |||||||||||||||||||| ||||| |||||||||||||  ||||||||||||||||||||||||    
T  30660842 ggaaaatgttacatgaacaccctttatttctacatcccattgtacaccctatgtattagggatattttggtaag 30660769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 171 - 242
Target Start/End: Original strand, 20148762 - 20148833
Alignment:
Q  171 aaaatattacatgaacaccctttattcctacaccccattgtacacctcatgtattagggatattttggtaag 242  Q
    ||||| |||||| |||||||||||||| |||| ||||||||||||||||| |||||||||||||||||||||    
T  20148762 aaaatgttacataaacaccctttattcatacatcccattgtacacctcatatattagggatattttggtaag 20148833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 169 - 242
Target Start/End: Original strand, 5754903 - 5754976
Alignment:
Q  169 ggaaaatattacatgaacaccctttattcctacaccccattgtacacctcatgtattagggatattttggtaag 242  Q
    ||||||| ||||||||||||| |||||||||||| ||||||||||| | ||| |||||||||||||||||||||    
T  5754903 ggaaaatgttacatgaacaccttttattcctacatcccattgtacatcccatatattagggatattttggtaag 5754976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 169 - 242
Target Start/End: Complemental strand, 42197535 - 42197462
Alignment:
Q  169 ggaaaatattacatgaacaccctttattcctacaccccattgtacacctcatgtattagggatattttggtaag 242  Q
    ||||||| ||||||||||||| |||||||||||||||||||| ||||   ||||||||||||||||||||||||    
T  42197535 ggaaaatgttacatgaacaccatttattcctacaccccattgcacacactatgtattagggatattttggtaag 42197462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 169 - 241
Target Start/End: Original strand, 1375542 - 1375614
Alignment:
Q  169 ggaaaatattacatgaacaccctttattcctacaccccattgtacacctcatgtattagggatattttggtaa 241  Q
    ||||||| ||||||||||||| ||||||| ||||||| |||||||||| ||| ||||||||||||||||||||    
T  1375542 ggaaaattttacatgaacaccttttattcatacacccaattgtacaccccatatattagggatattttggtaa 1375614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 170 - 242
Target Start/End: Original strand, 45397317 - 45397389
Alignment:
Q  170 gaaaatattacatgaacaccctttattcctacaccccattgtacacctcatgtattagggatattttggtaag 242  Q
    |||||| |||| |||||||||||||||||||||||||||| ||||||  |||||||||||||||||| |||||    
T  45397317 gaaaatgttacgtgaacaccctttattcctacaccccattctacaccctatgtattagggatatttttgtaag 45397389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 171 - 242
Target Start/End: Complemental strand, 29801048 - 29800977
Alignment:
Q  171 aaaatattacatgaacaccctttattcctacaccccattgtacacctcatgtattagggatattttggtaag 242  Q
    ||||| |||||| |||||| ||||||| |||| ||||||||||||| |||||||||||||||||||||||||    
T  29801048 aaaatgttacataaacaccatttattcatacatcccattgtacaccccatgtattagggatattttggtaag 29800977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 169 - 242
Target Start/End: Original strand, 31384664 - 31384737
Alignment:
Q  169 ggaaaatattacatgaacaccctttattcctacaccccattgtacacctcatgtattagggatattttggtaag 242  Q
    ||||| ||||||||||||||||||||||| ||||  | |||||||||| ||||||||||| |||||||||||||    
T  31384664 ggaaagtattacatgaacaccctttattcttacattctattgtacaccccatgtattaggaatattttggtaag 31384737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 169 - 241
Target Start/End: Original strand, 35181516 - 35181588
Alignment:
Q  169 ggaaaatattacatgaacaccctttattcctacaccccattgtacacctcatgtattagggatattttggtaa 241  Q
    ||||||| |||||||||||||||||| || ||||||| |||||||||| |||| |||||||| ||||||||||    
T  35181516 ggaaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatgcattagggacattttggtaa 35181588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 171 - 242
Target Start/End: Original strand, 26125637 - 26125708
Alignment:
Q  171 aaaatattacatgaacaccctttattcctacaccccattgtacacctcatgtattagggatattttggtaag 242  Q
    ||||| |||||| |||||||||||||| ||||  ||||||||||||  ||||||||||||||||||||||||    
T  26125637 aaaatgttacataaacaccctttattcatacattccattgtacaccctatgtattagggatattttggtaag 26125708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 169 - 241
Target Start/End: Original strand, 34304788 - 34304860
Alignment:
Q  169 ggaaaatattacatgaacaccctttattcctacaccccattgtacacctcatgtattagggatattttggtaa 241  Q
    ||||||| ||||||||||| |||||| || ||||||| |||||||||| |||| |||||||| ||||||||||    
T  34304788 ggaaaatgttacatgaacatcctttaatcatacaccctattgtacaccccatgcattagggacattttggtaa 34304860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 169 - 241
Target Start/End: Complemental strand, 18066818 - 18066746
Alignment:
Q  169 ggaaaatattacatgaacaccctttattcctacaccccattgtacacctcatgtattagggatattttggtaa 241  Q
    ||||||| |||||||||||||||||| || ||||  | |||||||| | ||||||||||||||||||| ||||    
T  18066818 ggaaaatgttacatgaacaccctttaatcatacattctattgtacatcccatgtattagggatattttagtaa 18066746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 96 - 159
Target Start/End: Original strand, 37425945 - 37426008
Alignment:
Q  96 ggcaggtgtattgcaaatcaatgttgttgtacacctgtagtataagtgtaccagcttctcaaag 159  Q
    |||| |||| ||||||||||||||||||||| ||||| | ||||| || |||||||||||||||    
T  37425945 ggcaagtgtgttgcaaatcaatgttgttgtagacctgcaatataactgcaccagcttctcaaag 37426008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 169 - 237
Target Start/End: Complemental strand, 40528735 - 40528666
Alignment:
Q  169 ggaaaatattacatgaacacccttt-attcctacaccccattgtacacctcatgtattagggatattttg 237  Q
    |||||||| |||||||||||||||| ||||  | ||||||||||||||| ||| ||||||||| ||||||    
T  40528735 ggaaaataatacatgaacacccttttattcacaaaccccattgtacaccccatatattagggacattttg 40528666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 169 - 204
Target Start/End: Original strand, 28977146 - 28977181
Alignment:
Q  169 ggaaaatattacatgaacaccctttattcctacacc 204  Q
    ||||||| ||||||||||||||||||||||||||||    
T  28977146 ggaaaatgttacatgaacaccctttattcctacacc 28977181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 171 - 241
Target Start/End: Complemental strand, 33630091 - 33630021
Alignment:
Q  171 aaaatattacatgaacaccctttattcctacaccccattgtacacctcatgtattagggatattttggtaa 241  Q
    ||||| ||||| |||||||||||| || |||||| |||||||||||  ||| |||||||| ||||| ||||    
T  33630091 aaaatgttacacgaacaccctttaatcatacacctcattgtacaccctatgcattagggacattttagtaa 33630021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 59; Significance: 4e-25; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 168 - 242
Target Start/End: Complemental strand, 33855144 - 33855070
Alignment:
Q  168 cggaaaatattacatgaacaccctttattcctacaccccattgtacacctcatgtattagggatattttggtaag 242  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||| | |||||||||||    
T  33855144 cggaaaatgttacatgaacaccctttattcctacaccccattgtacaccccatgtattaggaacattttggtaag 33855070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 169 - 242
Target Start/End: Complemental strand, 2614749 - 2614676
Alignment:
Q  169 ggaaaatattacatgaacaccctttattcctacaccccattgtacacctcatgtattagggatattttggtaag 242  Q
    ||||||| |||||||||||||||||||||||||| |||||||||||||  ||||||||||||||||||||||||    
T  2614749 ggaaaatgttacatgaacaccctttattcctacatcccattgtacaccctatgtattagggatattttggtaag 2614676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 169 - 242
Target Start/End: Original strand, 22512305 - 22512378
Alignment:
Q  169 ggaaaatattacatgaacaccctttattcctacaccccattgtacacctcatgtattagggatattttggtaag 242  Q
    ||||||| ||||||||||||||||||||||||||| |||||||||||  |||||||||||||||||||||||||    
T  22512305 ggaaaatgttacatgaacaccctttattcctacactccattgtacactccatgtattagggatattttggtaag 22512378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 169 - 242
Target Start/End: Original strand, 7617133 - 7617206
Alignment:
Q  169 ggaaaatattacatgaacaccctttattcctacaccccattgtacacctcatgtattagggatattttggtaag 242  Q
    ||||||| ||||||||||||||||||||| ||||| ||||| |||||| |||||||||||||||||||||||||    
T  7617133 ggaaaatgttacatgaacaccctttattcatacactccattatacaccccatgtattagggatattttggtaag 7617206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 169 - 242
Target Start/End: Original strand, 18033982 - 18034055
Alignment:
Q  169 ggaaaatattacatgaacaccctttattcctacaccccattgtacacctcatgtattagggatattttggtaag 242  Q
    ||||||| ||||||||||||||||||||||||||| ||||||||||||  |||||||||||||||||| |||||    
T  18033982 ggaaaatgttacatgaacaccctttattcctacactccattgtacaccctatgtattagggatatttttgtaag 18034055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 168 - 242
Target Start/End: Complemental strand, 41334764 - 41334690
Alignment:
Q  168 cggaaaatattacatgaacaccctttattcctacaccccattgtacacctcatgtattagggatattttggtaag 242  Q
    |||||||| ||||||||||||||||||||| |||||| |||| ||||||  ||||||||||||||||||||||||    
T  41334764 cggaaaatgttacatgaacaccctttattcatacacctcattatacaccctatgtattagggatattttggtaag 41334690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 169 - 242
Target Start/End: Original strand, 33801469 - 33801542
Alignment:
Q  169 ggaaaatattacatgaacaccctttattcctacaccccattgtacacctcatgtattagggatattttggtaag 242  Q
    ||||||| ||||||||||| |||||||| ||||||||||||||||||  ||||||||||||||||||| |||||    
T  33801469 ggaaaatgttacatgaacatcctttatttctacaccccattgtacactccatgtattagggatattttagtaag 33801542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 171 - 241
Target Start/End: Original strand, 5256997 - 5257067
Alignment:
Q  171 aaaatattacatgaacaccctttattcctacaccccattgtacacctcatgtattagggatattttggtaa 241  Q
    ||||| |||||| |||||| ||||||| |||| ||||||||||||| ||||||||||||||||||||||||    
T  5256997 aaaatgttacataaacaccatttattcatacatcccattgtacaccccatgtattagggatattttggtaa 5257067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 111 - 157
Target Start/End: Original strand, 39785635 - 39785681
Alignment:
Q  111 aatcaatgttgttgtacacctgtagtataagtgtaccagcttctcaa 157  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  39785635 aatcaatgttgttgtacacctgtagtataagtgtaccagcttctcaa 39785681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 169 - 241
Target Start/End: Complemental strand, 32473494 - 32473422
Alignment:
Q  169 ggaaaatattacatgaacaccctttattcctacaccccattgtacacctcatgtattagggatattttggtaa 241  Q
    ||||||| |||||||||||||||||| || ||||||  |||||||||| |||| |||||||||||||||||||    
T  32473494 ggaaaatgttacatgaacaccctttaatcatacaccttattgtacaccacatgcattagggatattttggtaa 32473422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 169 - 241
Target Start/End: Original strand, 38470579 - 38470651
Alignment:
Q  169 ggaaaatattacatgaacaccctttattcctacaccccattgtacacctcatgtattagggatattttggtaa 241  Q
    ||||||| |||||| |||||||||||||| ||||  |||||||||||| ||||||||| ||||||||||||||    
T  38470579 ggaaaatgttacataaacaccctttattcatacattccattgtacaccccatgtattaaggatattttggtaa 38470651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 171 - 227
Target Start/End: Complemental strand, 25915085 - 25915029
Alignment:
Q  171 aaaatattacatgaacaccctttattcctacaccccattgtacacctcatgtattag 227  Q
    ||||| |||||||||||||||||||||||||||| |||||||||||  |||||||||    
T  25915085 aaaatgttacatgaacaccctttattcctacacctcattgtacacccaatgtattag 25915029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 169 - 241
Target Start/End: Original strand, 17208074 - 17208146
Alignment:
Q  169 ggaaaatattacatgaacaccctttattcctacaccccattgtacacctcatgtattagggatattttggtaa 241  Q
    ||||||| |||| ||||||||||||| || |||||   |||||||||| |||| |||| ||| ||||||||||    
T  17208074 ggaaaatgttacgtgaacaccctttaatcatacactttattgtacaccccatgcattaaggacattttggtaa 17208146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 169 - 241
Target Start/End: Complemental strand, 30622818 - 30622747
Alignment:
Q  169 ggaaaatattacatgaacaccctttattcctacaccccattgtacacctcatgtattagggatattttggtaa 241  Q
    ||||||| ||||||||||| |||||| || ||||||| |||||| | | |||| |||| ||||||||||||||    
T  30622818 ggaaaatgttacatgaacatcctttaatcatacaccctattgta-agcccatgcattaaggatattttggtaa 30622747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 169 - 241
Target Start/End: Complemental strand, 39122532 - 39122461
Alignment:
Q  169 ggaaaatattacatgaacaccctttattcctacaccccattgtacacctcatgtattagggatattttggtaa 241  Q
    ||||| ||||||||||||||| ||||||| |||| |  |||  ||||| ||||||||||| ||||||||||||    
T  39122532 ggaaactattacatgaacaccttttattcatacatctaattagacacc-catgtattaggaatattttggtaa 39122461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 59; Significance: 4e-25; HSPs: 25)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 169 - 239
Target Start/End: Original strand, 16096747 - 16096817
Alignment:
Q  169 ggaaaatattacatgaacaccctttattcctacaccccattgtacacctcatgtattagggatattttggt 239  Q
    ||||||| ||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||    
T  16096747 ggaaaatgttacatgaacaccctttattcctacaccccattatacaccccatgtattagggatattttggt 16096817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 169 - 242
Target Start/End: Original strand, 1750414 - 1750487
Alignment:
Q  169 ggaaaatattacatgaacaccctttattcctacaccccattgtacacctcatgtattagggatattttggtaag 242  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||| |||||    
T  1750414 ggaaaatgttacatgaacaccctttattcctacaccccattgtacaccctatgtattagggatatttttgtaag 1750487  T

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Target: chr2; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 169 - 242
Target Start/End: Complemental strand, 12302353 - 12302280
Alignment:
Q  169 ggaaaatattacatgaacaccctttattcctacaccccattgtacacctcatgtattagggatattttggtaag 242  Q
    ||||||| |||||||||||||||||||| |||||||||||||||||||  |||||||||||||||||| |||||    
T  12302353 ggaaaatgttacatgaacaccctttatttctacaccccattgtacaccctatgtattagggatatttttgtaag 12302280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 170 - 242
Target Start/End: Original strand, 19047158 - 19047230
Alignment:
Q  170 gaaaatattacatgaacaccctttattcctacaccccattgtacacctcatgtattagggatattttggtaag 242  Q
    |||||| ||||||||||||||||||||||||||  ||||||||||||  ||||||||||||||||||||||||    
T  19047158 gaaaatgttacatgaacaccctttattcctacattccattgtacaccctatgtattagggatattttggtaag 19047230  T

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Target: chr2; HSP #5
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 171 - 242
Target Start/End: Complemental strand, 43490499 - 43490428
Alignment:
Q  171 aaaatattacatgaacaccctttattcctacaccccattgtacacctcatgtattagggatattttggtaag 242  Q
    ||||| |||||||||||||||||||||||||| ||||||||||||   ||||||||||||||||||||||||    
T  43490499 aaaatgttacatgaacaccctttattcctacatcccattgtacactctatgtattagggatattttggtaag 43490428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 164 - 242
Target Start/End: Original strand, 30838627 - 30838705
Alignment:
Q  164 ttgtcggaaaatattacatgaacaccctttattcctacaccccattgtacacctcatgtattagggatattttggtaag 242  Q
    |||| ||||||| |||||||||||||||||||| ||||| |  |||||||||| |||||||||||||||||||||||||    
T  30838627 ttgtaggaaaatgttacatgaacaccctttatttctacatcttattgtacaccccatgtattagggatattttggtaag 30838705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 178 - 242
Target Start/End: Original strand, 33229310 - 33229375
Alignment:
Q  178 tacatgaacacccttt-attcctacaccccattgtacacctcatgtattagggatattttggtaag 242  Q
    |||||||||||||||| ||||||||||| ||||||||||| |||||||||||||||||||||||||    
T  33229310 tacatgaacacccttttattcctacacctcattgtacaccccatgtattagggatattttggtaag 33229375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 169 - 242
Target Start/End: Complemental strand, 43335863 - 43335790
Alignment:
Q  169 ggaaaatattacatgaacaccctttattcctacaccccattgtacacctcatgtattagggatattttggtaag 242  Q
    ||||||| ||| ||||||| | |||||||||||||| ||||||||| | |||||||||||||||||||||||||    
T  43335863 ggaaaatgttatatgaacatcatttattcctacacctcattgtacatcccatgtattagggatattttggtaag 43335790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 169 - 241
Target Start/End: Original strand, 43114557 - 43114629
Alignment:
Q  169 ggaaaatattacatgaacaccctttattcctacaccccattgtacacctcatgtattagggatattttggtaa 241  Q
    ||||||| |||||||||||||||||| || ||||||| |||||||||| |||| |||||||| ||||||||||    
T  43114557 ggaaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatgcattagggacattttggtaa 43114629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 171 - 241
Target Start/End: Complemental strand, 11825752 - 11825682
Alignment:
Q  171 aaaatattacatgaacaccctttattcctacaccccattgtacacctcatgtattagggatattttggtaa 241  Q
    ||||| |||||||||||||||||| || ||||||| |||||||||| |||| |||||||| ||||||||||    
T  11825752 aaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatgcattagggacattttggtaa 11825682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 169 - 241
Target Start/End: Complemental strand, 4764826 - 4764754
Alignment:
Q  169 ggaaaatattacatgaacaccctttattcctacaccccattgtacacctcatgtattagggatattttggtaa 241  Q
    ||||||| |||||| |||||| ||||||||||||||| |||||||||| |||||||||   ||||||||||||    
T  4764826 ggaaaatgttacatcaacaccatttattcctacaccctattgtacaccccatgtattataaatattttggtaa 4764754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 169 - 241
Target Start/End: Complemental strand, 12415560 - 12415488
Alignment:
Q  169 ggaaaatattacatgaacaccctttattcctacaccccattgtacacctcatgtattagggatattttggtaa 241  Q
    ||||||| |||||||||||||||||| || ||||||  |||||||||| |||| |||||||| ||||||||||    
T  12415560 ggaaaatgttacatgaacaccctttaatcatacaccttattgtacaccccatgcattagggacattttggtaa 12415488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 169 - 241
Target Start/End: Complemental strand, 12427620 - 12427548
Alignment:
Q  169 ggaaaatattacatgaacaccctttattcctacaccccattgtacacctcatgtattagggatattttggtaa 241  Q
    ||||||| |||||||||||||||||| || ||||||  |||||||||| |||| |||||||| ||||||||||    
T  12427620 ggaaaatgttacatgaacaccctttaatcatacaccttattgtacaccccatgcattagggacattttggtaa 12427548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 169 - 241
Target Start/End: Original strand, 18491705 - 18491777
Alignment:
Q  169 ggaaaatattacatgaacaccctttattcctacaccccattgtacacctcatgtattagggatattttggtaa 241  Q
    ||||||| |||||||||||||||||| || ||||||| ||||||||||||||| |||| | | ||||||||||    
T  18491705 ggaaaatgttacatgaacaccctttaatcatacaccctattgtacacctcatgcattaagaacattttggtaa 18491777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 171 - 237
Target Start/End: Complemental strand, 41282072 - 41282006
Alignment:
Q  171 aaaatattacatgaacaccctttattcctacaccccattgtacacctcatgtattagggatattttg 237  Q
    ||||| |||||||||||||||||| || ||||||| |||||||||| |||| |||||||| ||||||    
T  41282072 aaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatgcattagggacattttg 41282006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 169 - 237
Target Start/End: Original strand, 16803968 - 16804036
Alignment:
Q  169 ggaaaatattacatgaacaccctttattcctacaccccattgtacacctcatgtattagggatattttg 237  Q
    ||||||| |||||||||||||||||| || ||||||| |||||||| | |||| |||||||| ||||||    
T  16803968 ggaaaatgttacatgaacaccctttaatcatacaccctattgtacatcccatgcattagggacattttg 16804036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 169 - 237
Target Start/End: Original strand, 16843250 - 16843318
Alignment:
Q  169 ggaaaatattacatgaacaccctttattcctacaccccattgtacacctcatgtattagggatattttg 237  Q
    ||||||| |||||||||||||||||| || ||||||| |||||||| | |||| |||||||| ||||||    
T  16843250 ggaaaatgttacatgaacaccctttaatcatacaccctattgtacatcccatgcattagggacattttg 16843318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 169 - 208
Target Start/End: Complemental strand, 42849946 - 42849907
Alignment:
Q  169 ggaaaatattacatgaacaccctttattcctacaccccat 208  Q
    ||||||| ||||||||||||||||||||||||||||||||    
T  42849946 ggaaaatgttacatgaacaccctttattcctacaccccat 42849907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 169 - 226
Target Start/End: Complemental strand, 966934 - 966877
Alignment:
Q  169 ggaaaatattacatgaacaccctttattcctacaccccattgtacacctcatgtatta 226  Q
    ||||||| |||||||||||||||||| || ||||||| |||||||||| |||| ||||    
T  966934 ggaaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatgcatta 966877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 169 - 241
Target Start/End: Original strand, 14285676 - 14285748
Alignment:
Q  169 ggaaaatattacatgaacaccctttattcctacaccccattgtacacctcatgtattagggatattttggtaa 241  Q
    |||||||||||||  ||||||||||| || ||||||| ||||||||||  || |||||  |||||||||||||    
T  14285676 ggaaaatattacacaaacaccctttaatcatacaccctattgtacaccctatatattaaagatattttggtaa 14285748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 170 - 221
Target Start/End: Complemental strand, 34817875 - 34817824
Alignment:
Q  170 gaaaatattacatgaacaccctttattcctacaccccattgtacacctcatg 221  Q
    |||||| |||||||||||||||||||||  ||||| ||||||||||| ||||    
T  34817875 gaaaatgttacatgaacaccctttattcacacacctcattgtacaccccatg 34817824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 171 - 212
Target Start/End: Original strand, 7070418 - 7070459
Alignment:
Q  171 aaaatattacatgaacaccctttattcctacaccccattgta 212  Q
    ||||| ||||||||||||||||||||| |||| |||||||||    
T  7070418 aaaatgttacatgaacaccctttattcatacatcccattgta 7070459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 169 - 237
Target Start/End: Complemental strand, 13780835 - 13780767
Alignment:
Q  169 ggaaaatattacatgaacaccctttattcctacaccccattgtacacctcatgtattagggatattttg 237  Q
    ||||||| |||||| |||||  |||||||  ||||| ||||||||||| |||  |||||||||||||||    
T  13780835 ggaaaatgttacatcaacacattttattcacacacctcattgtacaccccatacattagggatattttg 13780767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 177 - 241
Target Start/End: Complemental strand, 34895833 - 34895769
Alignment:
Q  177 ttacatgaacaccctttattcctacaccccattgtacacctcatgtattagggatattttggtaa 241  Q
    ||||||||||||| |||| ||  |||||| |||||||||| |||| |||||||| || |||||||    
T  34895833 ttacatgaacaccatttaatcacacaccctattgtacaccccatgcattagggacatattggtaa 34895769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 169 - 237
Target Start/End: Complemental strand, 36168662 - 36168594
Alignment:
Q  169 ggaaaatattacatgaacaccctttattcctacaccccattgtacacctcatgtattagggatattttg 237  Q
    ||||||||||||||||||||| |||||||  | || ||||||||||| | ||| | |||||| ||||||    
T  36168662 ggaaaatattacatgaacaccatttattcacatactccattgtacactttatgcactagggacattttg 36168594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: scaffold0038
Description:

Target: scaffold0038; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 170 - 242
Target Start/End: Original strand, 112656 - 112728
Alignment:
Q  170 gaaaatattacatgaacaccctttattcctacaccccattgtacacctcatgtattagggatattttggtaag 242  Q
    |||||| ||||||||||||||||||||||||||  ||||||||||||  ||||||||||||||||||||||||    
T  112656 gaaaatgttacatgaacaccctttattcctacattccattgtacaccctatgtattagggatattttggtaag 112728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0385 (Bit Score: 50; Significance: 9e-20; HSPs: 1)
Name: scaffold0385
Description:

Target: scaffold0385; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 169 - 242
Target Start/End: Original strand, 11251 - 11324
Alignment:
Q  169 ggaaaatattacatgaacaccctttattcctacaccccattgtacacctcatgtattagggatattttggtaag 242  Q
    ||||||| | |||||||||| |||||||| |||||||||||||||||| ||| |||||||||||||||||||||    
T  11251 ggaaaatgtcacatgaacacactttattcatacaccccattgtacaccccatatattagggatattttggtaag 11324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0187 (Bit Score: 50; Significance: 9e-20; HSPs: 2)
Name: scaffold0187
Description:

Target: scaffold0187; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 169 - 242
Target Start/End: Complemental strand, 14288 - 14215
Alignment:
Q  169 ggaaaatattacatgaacaccctttattcctacaccccattgtacacctcatgtattagggatattttggtaag 242  Q
    ||||||| |||||||||||||||||||| ||||||||||||||||| |  |||||||||||||||||| |||||    
T  14288 ggaaaatgttacatgaacaccctttatttctacaccccattgtacatcctatgtattagggatatttttgtaag 14215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0187; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 169 - 242
Target Start/End: Complemental strand, 24616 - 24543
Alignment:
Q  169 ggaaaatattacatgaacaccctttattcctacaccccattgtacacctcatgtattagggatattttggtaag 242  Q
    ||||||| |||||||||||||||||||| ||||||||||||||||| |  |||||||||||||||||| |||||    
T  24616 ggaaaatgttacatgaacaccctttatttctacaccccattgtacatcctatgtattagggatatttttgtaag 24543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0157 (Bit Score: 50; Significance: 9e-20; HSPs: 1)
Name: scaffold0157
Description:

Target: scaffold0157; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 169 - 242
Target Start/End: Complemental strand, 23521 - 23448
Alignment:
Q  169 ggaaaatattacatgaacaccctttattcctacaccccattgtacacctcatgtattagggatattttggtaag 242  Q
    ||||||| ||| ||||||||||||||||||||||| |||||||||| | |||||||||| ||||||||||||||    
T  23521 ggaaaatgttatatgaacaccctttattcctacactccattgtacatcccatgtattagagatattttggtaag 23448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 171 - 241
Target Start/End: Complemental strand, 45817 - 45747
Alignment:
Q  171 aaaatattacatgaacaccctttattcctacaccccattgtacacctcatgtattagggatattttggtaa 241  Q
    ||||| |||||||||||||||||| || ||||||| |||||||| |  |||||||| ||||||||||||||    
T  45817 aaaatgttacatgaacaccctttaatcatacaccctattgtacatcctatgtattaaggatattttggtaa 45747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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