View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11475_low_43 (Length: 240)
Name: NF11475_low_43
Description: NF11475
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11475_low_43 |
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Alignment Details
Target: chr1 (Bit Score: 174; Significance: 9e-94; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 174; E-Value: 9e-94
Query Start/End: Original strand, 18 - 226
Target Start/End: Original strand, 1033698 - 1033907
Alignment:
| Q |
18 |
gatgctgaagtacgatgtcgatgaaatttctgatcaccaacct-tgcacgtagcagattgcatgttacaattgtaaaggaagagaaaaccaatgttgtta |
116 |
Q |
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| T |
1033698 |
gatgctgaagtacgttatcgatgaaatttctgatcatcaacctctgcacgtagcagattgcgtgttacaattgtaaaggaagagaaaaccaatgttgtta |
1033797 |
T |
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| Q |
117 |
agatcagtgattgggtgcctgaaattgagcctataagagttctgagcagaagacattaatcatcagcgagtgactctcaaaagcaagaactaattttaga |
216 |
Q |
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| T |
1033798 |
agatcagtgatcgggtgcctgaaattgaacctataagagttctgagcagaagacattaatcatcagcgagtgactctcaaaagcaacaactaattttaga |
1033897 |
T |
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| Q |
217 |
tacagactga |
226 |
Q |
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|||||||||| |
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| T |
1033898 |
tacagactga |
1033907 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 103; Significance: 2e-51; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 74 - 224
Target Start/End: Complemental strand, 50832319 - 50832169
Alignment:
| Q |
74 |
ttgcatgttacaattgtaaaggaagagaaaaccaatgttgttaagatcagtgattgggtgcctgaaattgagcctataagagttctgagcagaagacatt |
173 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||| |||||||||||||||||||||| |
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| T |
50832319 |
ttgcgtgttacaattgtaaaggaagagaaaaccaatgttgttaagatcagtgattggatgcctgaaattgaacctattagagttctgagcagaagacatt |
50832220 |
T |
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| Q |
174 |
aatcatcagcgagtgactctcaaaagcaagaactaattttagatacagact |
224 |
Q |
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| T |
50832219 |
cattatcagtaaatgactctcaaaagcaacaactaatgtcagatacagact |
50832169 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 149 - 226
Target Start/End: Original strand, 4516329 - 4516406
Alignment:
| Q |
149 |
ataagagttctgagcagaagacattaatcatcagcgagtgactctcaaaagcaagaactaattttagatacagactga |
226 |
Q |
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| T |
4516329 |
ataagagttctgagcagaagacattcatcatcagcgaatgactctcaaaagcaacaactaattttagatacagactga |
4516406 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 22 - 109
Target Start/End: Original strand, 4516242 - 4516330
Alignment:
| Q |
22 |
ctgaagtacgatgtcgatgaaatttctgatcaccaacct-tgcacgtagcagattgcatgttacaattgtaaaggaagagaaaaccaat |
109 |
Q |
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| T |
4516242 |
ctgaactacgataacgatgaaatttctaatcatcaacctctgcacgtagcagattgcgtgttacaattgtaaaggaagagaaaaccaat |
4516330 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 21 - 60
Target Start/End: Complemental strand, 50832389 - 50832350
Alignment:
| Q |
21 |
gctgaagtacgatgtcgatgaaatttctgatcaccaacct |
60 |
Q |
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| T |
50832389 |
gctgaagtacgatatcgatgaaatttctgatcaccagcct |
50832350 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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