View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11475_low_5 (Length: 626)
Name: NF11475_low_5
Description: NF11475
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11475_low_5 |
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| [»] scaffold0432 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 377; Significance: 0; HSPs: 11)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 377; E-Value: 0
Query Start/End: Original strand, 130 - 594
Target Start/End: Original strand, 9828999 - 9829460
Alignment:
| Q |
130 |
acaacatttactaactcgtcagcacttctttcctgaacacgattccatataagtttacaaatcggtttnnnnnnnnnnnnnnnnntttcatactcactaa |
229 |
Q |
| |
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||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||| ||||||||| ||||||||||||||| |
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| T |
9828999 |
acaacatttactaactcatcagcacttctttcctgaacacgattccttataagtttactaatcggtttatcatcatcatcat---tttcatactcactaa |
9829095 |
T |
|
| Q |
230 |
taaagacattatgagtccgtttccttttcggtattacagcacataagagatcttcaacaaaatcagaatcttccttattgctttgatcataattggagta |
329 |
Q |
| |
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||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
9829096 |
taaagacattacgagtccgtttccttttcggaattacagcacataagagatcttcaacaaaatcagaatcttcctcgttgctttgatcataattggagta |
9829195 |
T |
|
| Q |
330 |
caaattctttcccttttctgctgcagaacacgttgacagagaattacattgactaccttgcatatcaaatacatcttgaaaattagaattcttgttactc |
429 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
9829196 |
caaattctttcccttttctgctgcagaacacgttgacagagaattacattgactaccttgcatatcagatacatcttgaaaattagaattcttgttactc |
9829295 |
T |
|
| Q |
430 |
gtattagattccgcgtcactattagacccatctagtgaattattagacatgtcttcacaatcagatgcatcaaaatcatcaccaataaaatcaatattgt |
529 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9829296 |
gtattagattccgcgtcactattagacccatctagtgaattattagacatgtcttcacaatcagatgcatcaaaatcatcaccaataaaatcaatattgt |
9829395 |
T |
|
| Q |
530 |
ttccttcctcactgtatgtcgaatcctcttctaattcatcatcatcatttgttggaatactttgc |
594 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
9829396 |
ttccttcctcactgtatgtcgaatcctcttctaattcatcatcatcatttgttggaatactttgc |
9829460 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 215 - 583
Target Start/End: Original strand, 9755629 - 9755993
Alignment:
| Q |
215 |
tttcatactcactaataaagacattatgagtccgtttccttttcggtattacagcacataagagatcttcaacaaaatcagaatcttccttattgctttg |
314 |
Q |
| |
|
||||| ||||||| |||||||||||| |||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||| | ||||||| |
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|
| T |
9755629 |
tttcagactcacttataaagacattacgagtccgtttcctttttggaattacagcacataagagatcttcaacaaaatcagaatcttcctcactgctttg |
9755728 |
T |
|
| Q |
315 |
atcataattggagtacaaattctttcccttttctgctgcagaacacgttgacagagaattacattgactaccttgcatatcaaatacatcttgaaaatta |
414 |
Q |
| |
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|||||||||||||||||||||||||||||||| || ||||||||| |||||| ||||| || ||| ||| |||||||||||| | ||||||||||||| | |
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| T |
9755729 |
atcataattggagtacaaattctttcccttttttgttgcagaacatgttgactgagaaatatattcactgccttgcatatcagacacatcttgaaaataa |
9755828 |
T |
|
| Q |
415 |
gaattcttgttactcgtattagattccgcgtcactattagacccatctagtgaattattagacatgtcttcacaatcagatgcatcaaaatcatcaccaa |
514 |
Q |
| |
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|| ||||||||||| ||| |||| ||||||||||||||| ||||| ||||| ||||||||||| ||||||||||||||||||||||||||||| ||| |
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| T |
9755829 |
gagttcttgttactagta----attctgcgtcactattagactcatcttgtgaagtattagacatgccttcacaatcagatgcatcaaaatcatcaacaa |
9755924 |
T |
|
| Q |
515 |
taaaatcaatattgtttccttcctcactgtatgtcgaatcctcttctaattcatcatcatcatttgttg |
583 |
Q |
| |
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|||||||| | ||||||||||||||||||||||| |||||||||||| |||||||||||| ||||||| |
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| T |
9755925 |
taaaatcattcatgtttccttcctcactgtatgtcaaatcctcttctagttcatcatcatcgtttgttg |
9755993 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 288 - 549
Target Start/End: Original strand, 9813864 - 9814122
Alignment:
| Q |
288 |
aaaatcagaatcttccttattgctttgatcataattggagtacaaattctttcccttttctgctgcagaacacgttgacagagaattacattgactacct |
387 |
Q |
| |
|
||||||||| | ||| | |||| ||||||| ||||||||||| ||||||||||||||||||||||||||| |||||||||||| ||| | ||||||| |
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|
| T |
9813864 |
aaaatcagatttttcgtcattgatttgatcctaattggagtaaaaattctttcccttttctgctgcagaatttgttgacagagaaatacttccactacct |
9813963 |
T |
|
| Q |
388 |
tgcatatcaaatacatcttgaaaattagaattcttgttactcgtattagattccgcgtcactattagacccatctagtgaattattagacatgtcttcac |
487 |
Q |
| |
|
||||||||| |||||||||| |||| ||||| |||| ||| || | ||||||| |||||||| ||||| ||||| ||||||||||||||||| |||||| |
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|
| T |
9813964 |
tgcatatcagatacatcttgcaaataagaatccttgctacacgaactagattctgcgtcactgctagactcatctcgtgaattattagacatgccttcac |
9814063 |
T |
|
| Q |
488 |
aatcagatgcatcaaaatcatcaccaataaaatcaatattgtttccttcctcactgtatgtc |
549 |
Q |
| |
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|||||||||||||||||| || ||||||||||| |||||||| |||||||| ||| |||| |
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| T |
9814064 |
aatcagatgcatcaaaataat---caataaaatcactattgttttcttcctcattgtgtgtc |
9814122 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 2 - 90
Target Start/End: Original strand, 9755387 - 9755475
Alignment:
| Q |
2 |
ccttatcatcatgacttttggttacacattttcttagaggccttcgacggcggcgcctactctcttccttcctccttacaagttgacta |
90 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
9755387 |
ccttatcatcatgacttttggttacacattttcttagaggccttcgacggcggcgcctactctcttccttcctccttacaagttgacta |
9755475 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 2 - 90
Target Start/End: Original strand, 9828862 - 9828950
Alignment:
| Q |
2 |
ccttatcatcatgacttttggttacacattttcttagaggccttcgacggcggcgcctactctcttccttcctccttacaagttgacta |
90 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9828862 |
ccttatcatcatgacttttggttacacattttcttagaggccttcgacggcggcgcctactctcttccttcctccttacaagttgacta |
9828950 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 445 - 610
Target Start/End: Original strand, 9708475 - 9708640
Alignment:
| Q |
445 |
tcactattagacccatctagtgaattattagacatgtcttcacaatcagatgcatcaaaatcatcaccaataaaatcaatattgtttccttcctcactgt |
544 |
Q |
| |
|
|||||||||||| | || |||| |||| ||| ||||||||||||||||||||||||| ||||||| ||||||||||| || ||| |||||||||| | |
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| T |
9708475 |
tcactattagactcttcctgtgacttatcagatatgtcttcacaatcagatgcatcaacatcatcaacaataaaatcactaaggttatcttcctcactat |
9708574 |
T |
|
| Q |
545 |
atgtcgaatcctcttctaattcatcatcatcatttgttggaatactttgctgatagttgaccttat |
610 |
Q |
| |
|
||| | ||||| || ||| ||||||||||||||| |||||||||| |||||||| |||||||||| |
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|
| T |
9708575 |
atgacaaatccactcctaggtcatcatcatcattttttggaatactctgctgatacttgaccttat |
9708640 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 482 - 626
Target Start/End: Original strand, 9755264 - 9755408
Alignment:
| Q |
482 |
cttcacaatcagatgcatcaaaatcatcaccaataaaatcaatattgtttccttcctcactgtatgtcgaatcctcttctaattcatcatcatcatttgt |
581 |
Q |
| |
|
|||||||| ||||| ||||||||||||| |||||||| | | ||||||||||||||| | || | |||||| | ||||| ||||||||||||| |
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|
| T |
9755264 |
cttcacaaccagataaatcaaaatcatcaacaataaaacctttcaagtttccttcctcactttgtgataagtcctctattgattcagcatcatcatttgt |
9755363 |
T |
|
| Q |
582 |
tggaatactttgctgatagttgaccttatcatcatgacttttggt |
626 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9755364 |
tggaatactttgctgatagttgaccttatcatcatgacttttggt |
9755408 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 482 - 626
Target Start/End: Original strand, 9828739 - 9828883
Alignment:
| Q |
482 |
cttcacaatcagatgcatcaaaatcatcaccaataaaatcaatattgtttccttcctcactgtatgtcgaatcctcttctaattcatcatcatcatttgt |
581 |
Q |
| |
|
|||||||| |||| |||||||||||||| |||||||| | | ||||||||||||||| | || | |||||| | ||||| ||||||||||||| |
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|
| T |
9828739 |
cttcacaactagatacatcaaaatcatcaacaataaaacctttcgagtttccttcctcactttgtgataagtcctctattgattcagcatcatcatttgt |
9828838 |
T |
|
| Q |
582 |
tggaatactttgctgatagttgaccttatcatcatgacttttggt |
626 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9828839 |
tggaatactttgctgatagttgaccttatcatcatgacttttggt |
9828883 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 288 - 428
Target Start/End: Original strand, 9804111 - 9804250
Alignment:
| Q |
288 |
aaaatcagaatcttccttattgctttgatcataattggagtacaaattctttcccttttctgctgcagaacacgttgacagagaattacattgactacct |
387 |
Q |
| |
|
|||||||||| ||||| |||| ||||||||||||||||||| || ||||| | ||||||||||||||||| |||| ||||||| ||| | ||||||| |
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|
| T |
9804111 |
aaaatcagaaatttcctcattgttttgatcataattggagtaaaagttctt-cgcttttctgctgcagaacttgttggcagagaaatacctccactacct |
9804209 |
T |
|
| Q |
388 |
tgcatatcaaatacatcttgaaaattagaattcttgttact |
428 |
Q |
| |
|
||||| ||| ||||||| || |||| ||||| |||| |||| |
|
|
| T |
9804210 |
tgcatttcagatacatcctgcaaataagaatccttgctact |
9804250 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 574 - 624
Target Start/End: Original strand, 9804004 - 9804054
Alignment:
| Q |
574 |
tcatttgttggaatactttgctgatagttgaccttatcatcatgacttttg |
624 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||| ||||| |
|
|
| T |
9804004 |
tcatttgttggaatactttgctgatagttgaccttatcaccatgaattttg |
9804054 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #11
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 130 - 187
Target Start/End: Original strand, 9755535 - 9755592
Alignment:
| Q |
130 |
acaacatttactaactcgtcagcacttctttcctgaacacgattccatataagtttac |
187 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||| |||||| || |||||||| |
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|
| T |
9755535 |
acaacatttaccaactcgtcagcacttctttcctgaacatgattccttacaagtttac |
9755592 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0432 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: scaffold0432
Description:
Target: scaffold0432; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 574 - 608
Target Start/End: Original strand, 7334 - 7368
Alignment:
| Q |
574 |
tcatttgttggaatactttgctgatagttgacctt |
608 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||| |
|
|
| T |
7334 |
tcatttgttggaatactttgatgatagttgacctt |
7368 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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