View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11475_low_55 (Length: 219)
Name: NF11475_low_55
Description: NF11475
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11475_low_55 |
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Alignment Details
Target: chr7 (Bit Score: 200; Significance: 1e-109; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 3 - 202
Target Start/End: Complemental strand, 14749165 - 14748966
Alignment:
| Q |
3 |
gcagacttaaaagcaacttttgggaatggtcagaaacatgagttaaatgtttctacctatcaaatgtgtgtactcatgctgtttaataatgctgataggc |
102 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14749165 |
gcagacttaaaagcaacttttgggaatggtcagaaacatgagttaaatgtttctacctatcaaatgtgtgtactcatgctgtttaataatgctgataggc |
14749066 |
T |
|
| Q |
103 |
taagctacagggaaattgagcaagcaaccgagattccagcttcagatttgaagaggtgcctgcaatctttggctttggttaagggaagaaatgtccttag |
202 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14749065 |
taagctacagggaaattgagcaagcaaccgagattccagcttcagatttgaagaggtgcctgcaatctttggctttggttaagggaagaaatgtccttag |
14748966 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 3 - 202
Target Start/End: Complemental strand, 14764214 - 14764015
Alignment:
| Q |
3 |
gcagacttaaaagcaacttttgggaatggtcagaaacatgagttaaatgtttctacctatcaaatgtgtgtactcatgctgtttaataatgctgataggc |
102 |
Q |
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|||||||||||||| |||||||||| |||||||||||||||||||||||| || ||||||||||||||| |||||||||||||||||||||||||||| | |
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| T |
14764214 |
gcagacttaaaagctacttttgggagtggtcagaaacatgagttaaatgtctccacctatcaaatgtgtatactcatgctgtttaataatgctgatagac |
14764115 |
T |
|
| Q |
103 |
taagctacagggaaattgagcaagcaaccgagattccagcttcagatttgaagaggtgcctgcaatctttggctttggttaagggaagaaatgtccttag |
202 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14764114 |
taagctacagggaaattgagcaagcaaccgagattccagcttcagatttgaagaggtgcctgcaatctttggctttggttaagggaagaaatgtccttag |
14764015 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 21 - 131
Target Start/End: Complemental strand, 14804735 - 14804625
Alignment:
| Q |
21 |
tttgggaatggtcagaaacatgagttaaatgtttctacctatcaaatgtgtgtactcatgctgtttaataatgctgataggctaagctacagggaaattg |
120 |
Q |
| |
|
|||||||||||||| |||||||||||| |||| || ||||||||||||||||| | ||| |||||||| ||| |||| |||||||||| |||||||| |
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| T |
14804735 |
tttgggaatggtcataaacatgagttacatgtctccacctatcaaatgtgtgtcttgatgttgtttaatgatgttgatcaactaagctacaaggaaattg |
14804636 |
T |
|
| Q |
121 |
agcaagcaacc |
131 |
Q |
| |
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|| |||||||| |
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| T |
14804635 |
agaaagcaacc |
14804625 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 21 - 131
Target Start/End: Complemental strand, 15251729 - 15251619
Alignment:
| Q |
21 |
tttgggaatggtcagaaacatgagttaaatgtttctacctatcaaatgtgtgtactcatgctgtttaataatgctgataggctaagctacagggaaattg |
120 |
Q |
| |
|
|||||||||||||| |||||||||||| |||| || ||||||||||||||||| | ||| |||||||| ||| |||| |||||||||| |||||||| |
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|
| T |
15251729 |
tttgggaatggtcataaacatgagttacatgtctccacctatcaaatgtgtgtcttgatgttgtttaatgatgttgatcaactaagctacaaggaaattg |
15251630 |
T |
|
| Q |
121 |
agcaagcaacc |
131 |
Q |
| |
|
|| |||||||| |
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|
| T |
15251629 |
agaaagcaacc |
15251619 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 122
Target Start/End: Complemental strand, 14812162 - 14812054
Alignment:
| Q |
14 |
agcaacttttgggaatggtcagaaacatgagttaaatgtttctacctatcaaatgtgtgtactcatgctgtttaataatgctgataggctaagctacagg |
113 |
Q |
| |
|
|||||| ||||| ||||||| || || |||||| |||| ||||| |||||||||||||| || ||| |||||||| || |||| |||||||||| | |
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| T |
14812162 |
agcaacatttggaaatggtcgtaagcacgagttacatgtctctacttatcaaatgtgtgtcctgatgttgtttaatgatattgatcaactaagctacaag |
14812063 |
T |
|
| Q |
114 |
gaaattgag |
122 |
Q |
| |
|
|| |||||| |
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|
| T |
14812062 |
gacattgag |
14812054 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 122
Target Start/End: Complemental strand, 15259157 - 15259049
Alignment:
| Q |
14 |
agcaacttttgggaatggtcagaaacatgagttaaatgtttctacctatcaaatgtgtgtactcatgctgtttaataatgctgataggctaagctacagg |
113 |
Q |
| |
|
|||||| ||||| ||||||| || || |||||| |||| ||||| |||||||||||||| || ||| |||||||| || |||| |||||||||| | |
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|
| T |
15259157 |
agcaacatttggaaatggtcgtaagcacgagttacatgtctctacttatcaaatgtgtgtcctgatgttgtttaatgatattgatcaactaagctacaag |
15259058 |
T |
|
| Q |
114 |
gaaattgag |
122 |
Q |
| |
|
|| |||||| |
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|
| T |
15259057 |
gacattgag |
15259049 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 176; Significance: 6e-95; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 3 - 202
Target Start/End: Original strand, 17564385 - 17564584
Alignment:
| Q |
3 |
gcagacttaaaagcaacttttgggaatggtcagaaacatgagttaaatgtttctacctatcaaatgtgtgtactcatgctgtttaataatgctgataggc |
102 |
Q |
| |
|
|||||||||||||| |||||||||| |||||||||||||||||||||||| || ||||||||||||||| |||||||||||||||||||||||||||| | |
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| T |
17564385 |
gcagacttaaaagctacttttgggagtggtcagaaacatgagttaaatgtctccacctatcaaatgtgtatactcatgctgtttaataatgctgatagac |
17564484 |
T |
|
| Q |
103 |
taagctacagggaaattgagcaagcaaccgagattccagcttcagatttgaagaggtgcctgcaatctttggctttggttaagggaagaaatgtccttag |
202 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17564485 |
taagctacagggaaattgagcaagcaaccgagattccagcttcagatttgaagaggtgcctgcaatctttggctttggttaagggaagaaatgtccttag |
17564584 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 149; E-Value: 7e-79
Query Start/End: Original strand, 3 - 199
Target Start/End: Complemental strand, 17621272 - 17621076
Alignment:
| Q |
3 |
gcagacttaaaagcaacttttgggaatggtcagaaacatgagttaaatgtttctacctatcaaatgtgtgtactcatgctgtttaataatgctgataggc |
102 |
Q |
| |
|
|||| |||||| || ||||||||||| ||||||| ||||| ||||||||| || |||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
17621272 |
gcagtcttaaatgctacttttgggaaaggtcagagacatgtgttaaatgtctccacctatcaaatgtgtgtactcatgctgtttaataatgctgatagac |
17621173 |
T |
|
| Q |
103 |
taagctacagggaaattgagcaagcaaccgagattccagcttcagatttgaagaggtgcctgcaatctttggctttggttaagggaagaaatgtcct |
199 |
Q |
| |
|
||||||||| |||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
17621172 |
taagctacaaggaaattgagcaagcaactgaaattccagcttcagatttgaagaggtgcctgcaatctttggctttggttaagggaagaaatgtcct |
17621076 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 157; Significance: 1e-83; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 3 - 199
Target Start/End: Complemental strand, 15194654 - 15194458
Alignment:
| Q |
3 |
gcagacttaaaagcaacttttgggaatggtcagaaacatgagttaaatgtttctacctatcaaatgtgtgtactcatgctgtttaataatgctgataggc |
102 |
Q |
| |
|
|||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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|
| T |
15194654 |
gcagacttaaaagcaactttcgagaatggtcagaaacatgagttaaatgtttctacctatcaaatgtgtgtactcatgctatttaataatgctgatagat |
15194555 |
T |
|
| Q |
103 |
taagctacagggaaattgagcaagcaaccgagattccagcttcagatttgaagaggtgcctgcaatctttggctttggttaagggaagaaatgtcct |
199 |
Q |
| |
|
||||||||| |||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||| | ||||||||| |
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|
| T |
15194554 |
taagctacaaggaaattgagcaagcaactgagattccagcttcagatttgaagatgtgcctgcaatctttggctttggttaagggtaaaaatgtcct |
15194458 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 3 - 187
Target Start/End: Complemental strand, 15205339 - 15205155
Alignment:
| Q |
3 |
gcagacttaaaagcaacttttgggaatggtcagaaacatgagttaaatgtttctacctatcaaatgtgtgtactcatgctgtttaataatgctgataggc |
102 |
Q |
| |
|
|||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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|
| T |
15205339 |
gcagacttaaaagcaactttcgagaatggtcagaaacatgagttaaatgtttctacctatcaaatgtgtgtactcatgctatttaataatgctgatagat |
15205240 |
T |
|
| Q |
103 |
taagctacagggaaattgagcaagcaaccgagattccagcttcagatttgaagaggtgcctgcaatctttggctttggttaaggg |
187 |
Q |
| |
|
||||||||| |||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
15205239 |
taagctacaaggaaattgagcaagcaactgagattccagcttcagatttgaagatgtgcctgcaatctttggctttggttaaggg |
15205155 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 3 - 187
Target Start/End: Complemental strand, 15215072 - 15214888
Alignment:
| Q |
3 |
gcagacttaaaagcaacttttgggaatggtcagaaacatgagttaaatgtttctacctatcaaatgtgtgtactcatgctgtttaataatgctgataggc |
102 |
Q |
| |
|
|||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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|
| T |
15215072 |
gcagacttaaaagcaactttcgagaatggtcagaaacatgagttaaatgtttctacctatcaaatgtgtgtactcatgctatttaataatgctgatagat |
15214973 |
T |
|
| Q |
103 |
taagctacagggaaattgagcaagcaaccgagattccagcttcagatttgaagaggtgcctgcaatctttggctttggttaaggg |
187 |
Q |
| |
|
||||||||| |||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
15214972 |
taagctacaaggaaattgagcaagcaactgagattccagcttcagatttgaagatgtgcctgcaatctttggctttggttaaggg |
15214888 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 100; Significance: 1e-49; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 3 - 202
Target Start/End: Complemental strand, 24394634 - 24394435
Alignment:
| Q |
3 |
gcagacttaaaagcaacttttgggaatggtcagaaacatgagttaaatgtttctacctatcaaatgtgtgtactcatgctgtttaataatgctgataggc |
102 |
Q |
| |
|
||||||||||||||||| |||||||| |||||||| |||||||||||||| |||||||| ||||||||||| || ||||| || ||||||||||||| | |
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|
| T |
24394634 |
gcagacttaaaagcaacctttgggaagggtcagaagcatgagttaaatgtctctacctaccaaatgtgtgtccttatgcttttcaataatgctgataaac |
24394535 |
T |
|
| Q |
103 |
taagctacagggaaattgagcaagcaaccgagattccagcttcagatttgaagaggtgcctgcaatctttggctttggttaagggaagaaatgtccttag |
202 |
Q |
| |
|
| ||||||| ||| |||||||||||||| |||||||| || | ||| | ||||| || |||||||| |||||||| ||||||||||||||||||||||| |
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|
| T |
24394534 |
ttagctacaaggagattgagcaagcaactgagattcctgccccggatcttaagagatgtctgcaatcattggctttagttaagggaagaaatgtccttag |
24394435 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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