View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11475_low_59 (Length: 215)

Name: NF11475_low_59
Description: NF11475
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11475_low_59
NF11475_low_59
[»] chr1 (9 HSPs)
chr1 (67-199)||(49171195-49171327)
chr1 (5-67)||(10923778-10923840)
chr1 (83-136)||(49178809-49178862)
chr1 (5-45)||(26519980-26520020)
chr1 (5-45)||(35825402-35825442)
chr1 (7-45)||(50579356-50579394)
chr1 (5-45)||(4447258-4447298)
chr1 (1-45)||(1356762-1356806)
chr1 (12-44)||(42051559-42051591)
[»] chr3 (10 HSPs)
chr3 (5-66)||(9145357-9145418)
chr3 (5-52)||(45200255-45200302)
chr3 (5-45)||(26135636-26135676)
chr3 (5-45)||(29170560-29170600)
chr3 (6-42)||(45317159-45317195)
chr3 (5-45)||(50463263-50463303)
chr3 (11-52)||(55140022-55140063)
chr3 (6-45)||(28991103-28991142)
chr3 (11-45)||(25631069-25631103)
chr3 (1-43)||(42443865-42443907)
[»] chr4 (11 HSPs)
chr4 (5-45)||(7069330-7069370)
chr4 (5-66)||(42384276-42384337)
chr4 (6-45)||(6377072-6377111)
chr4 (1-42)||(32555542-32555583)
chr4 (5-45)||(28185080-28185120)
chr4 (5-45)||(49269313-49269353)
chr4 (8-64)||(54571763-54571819)
chr4 (6-45)||(34487457-34487496)
chr4 (6-41)||(41235604-41235639)
chr4 (6-43)||(31845908-31845945)
chr4 (5-45)||(28973050-28973090)
[»] chr5 (4 HSPs)
chr5 (5-66)||(35540134-35540192)
chr5 (5-45)||(10371366-10371406)
chr5 (6-45)||(18405711-18405750)
chr5 (5-43)||(28210872-28210910)
[»] chr7 (4 HSPs)
chr7 (6-43)||(25942433-25942470)
chr7 (1-44)||(297710-297753)
chr7 (6-45)||(29646612-29646651)
chr7 (6-46)||(19347980-19348020)
[»] chr6 (5 HSPs)
chr6 (1-45)||(11545958-11546002)
chr6 (6-45)||(15707262-15707301)
chr6 (1-43)||(34760351-34760393)
chr6 (8-40)||(10321493-10321525)
chr6 (5-45)||(30044161-30044201)
[»] scaffold0110 (1 HSPs)
scaffold0110 (6-45)||(49481-49520)
[»] chr2 (4 HSPs)
chr2 (6-45)||(4158685-4158724)
chr2 (5-66)||(3587161-3587230)
chr2 (1-45)||(44088462-44088506)
chr2 (5-52)||(9651121-9651167)
[»] chr8 (2 HSPs)
chr8 (11-45)||(6837751-6837785)
chr8 (8-45)||(2612645-2612682)


Alignment Details
Target: chr1 (Bit Score: 121; Significance: 4e-62; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 67 - 199
Target Start/End: Complemental strand, 49171327 - 49171195
Alignment:
Q  67 tgcttgtgtgatccgcccaagtattttcagatttccaacactcgttgttctcaaattgaagaagctaaaagtggttgatgatatctctgttgatcttcct 166  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||     
T  49171327 tgcttgtgtgatccgcccaagtattttcagatttccaacactcgttgttctcaaattgaagaggctaaaagtggttgatgatatctctgttgatcttccc 49171228  T
Q  167 ttgctttagacccttcatctggataaggttcgt 199  Q
    |||||| ||||||||||||||||||||||||||    
T  49171227 ttgcttaagacccttcatctggataaggttcgt 49171195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 5 - 67
Target Start/End: Complemental strand, 10923840 - 10923778
Alignment:
Q  5 ggttagttttttaggcccgacccggcccaaaaatatgggccggcccatttttgacagctctat 67  Q
    ||||||||||||||||||| |||| ||||||||||||||||||||||||||| | ||||||||    
T  10923840 ggttagttttttaggcccggcccgacccaaaaatatgggccggcccattttttatagctctat 10923778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 83 - 136
Target Start/End: Original strand, 49178809 - 49178862
Alignment:
Q  83 ccaagtattttcagatttccaacactcgttgttctcaaattgaagaagctaaaa 136  Q
    ||||||||||||||||||||| |||||||||||||||||||||||| |||||||    
T  49178809 ccaagtattttcagatttccatcactcgttgttctcaaattgaagacgctaaaa 49178862  T

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Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 5 - 45
Target Start/End: Original strand, 26519980 - 26520020
Alignment:
Q  5 ggttagttttttaggcccgacccggcccaaaaatatgggcc 45  Q
    ||||||||||||||||||| |||||||||||||||||||||    
T  26519980 ggttagttttttaggcccggcccggcccaaaaatatgggcc 26520020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 5 - 45
Target Start/End: Complemental strand, 35825442 - 35825402
Alignment:
Q  5 ggttagttttttaggcccgacccggcccaaaaatatgggcc 45  Q
    ||||||||||||||||||| |||||||||||||||||||||    
T  35825442 ggttagttttttaggcccggcccggcccaaaaatatgggcc 35825402  T

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Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 7 - 45
Target Start/End: Original strand, 50579356 - 50579394
Alignment:
Q  7 ttagttttttaggcccgacccggcccaaaaatatgggcc 45  Q
    |||||||||||||||||| ||||||||||||||||||||    
T  50579356 ttagttttttaggcccgatccggcccaaaaatatgggcc 50579394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 5 - 45
Target Start/End: Complemental strand, 4447298 - 4447258
Alignment:
Q  5 ggttagttttttaggcccgacccggcccaaaaatatgggcc 45  Q
    ||||||||||||||||||| |||| ||||||||||||||||    
T  4447298 ggttagttttttaggcccgtcccgacccaaaaatatgggcc 4447258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 1356806 - 1356762
Alignment:
Q  1 tttgggttagttttttaggcccgacccggcccaaaaatatgggcc 45  Q
    |||||| |||||||| ||||||||||||||||||||  |||||||    
T  1356806 tttgggctagtttttcaggcccgacccggcccaaaagcatgggcc 1356762  T

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Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 12 - 44
Target Start/End: Original strand, 42051559 - 42051591
Alignment:
Q  12 tttttaggcccgacccggcccaaaaatatgggc 44  Q
    |||||||||| ||||||||||||||||||||||    
T  42051559 tttttaggccggacccggcccaaaaatatgggc 42051591  T

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Target: chr3 (Bit Score: 54; Significance: 3e-22; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 5 - 66
Target Start/End: Original strand, 9145357 - 9145418
Alignment:
Q  5 ggttagttttttaggcccgacccggcccaaaaatatgggccggcccatttttgacagctcta 66  Q
    ||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||    
T  9145357 ggttagttttttaggcccggcccggcccaaaaaaatgggccggcccatttttgacagctcta 9145418  T

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Target: chr3; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 5 - 52
Target Start/End: Original strand, 45200255 - 45200302
Alignment:
Q  5 ggttagttttttaggcccgacccggcccaaaaatatgggccggcccat 52  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||    
T  45200255 ggttagttttttaggcccggcccggcccaaaaatatgggccggcccat 45200302  T

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Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 5 - 45
Target Start/End: Original strand, 26135636 - 26135676
Alignment:
Q  5 ggttagttttttaggcccgacccggcccaaaaatatgggcc 45  Q
    |||||||||||||||||||||||| ||||||||||||||||    
T  26135636 ggttagttttttaggcccgacccgacccaaaaatatgggcc 26135676  T

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Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 5 - 45
Target Start/End: Original strand, 29170560 - 29170600
Alignment:
Q  5 ggttagttttttaggcccgacccggcccaaaaatatgggcc 45  Q
    ||||||||||||||||||| |||||||||||||||||||||    
T  29170560 ggttagttttttaggcccggcccggcccaaaaatatgggcc 29170600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 6 - 42
Target Start/End: Original strand, 45317159 - 45317195
Alignment:
Q  6 gttagttttttaggcccgacccggcccaaaaatatgg 42  Q
    |||||||||||||||||||||||||||||||||||||    
T  45317159 gttagttttttaggcccgacccggcccaaaaatatgg 45317195  T

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Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 5 - 45
Target Start/End: Original strand, 50463263 - 50463303
Alignment:
Q  5 ggttagttttttaggcccgacccggcccaaaaatatgggcc 45  Q
    ||||||||||||||||||| |||||||||||||||||||||    
T  50463263 ggttagttttttaggcccggcccggcccaaaaatatgggcc 50463303  T

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Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 11 - 52
Target Start/End: Complemental strand, 55140063 - 55140022
Alignment:
Q  11 ttttttaggcccgacccggcccaaaaatatgggccggcccat 52  Q
    |||||||||||||||||| | |||||||||||||||||||||    
T  55140063 ttttttaggcccgacccgactcaaaaatatgggccggcccat 55140022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 6 - 45
Target Start/End: Complemental strand, 28991142 - 28991103
Alignment:
Q  6 gttagttttttaggcccgacccggcccaaaaatatgggcc 45  Q
    |||||||||||||||||| |||| ||||||||||||||||    
T  28991142 gttagttttttaggcccggcccgacccaaaaatatgggcc 28991103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 11 - 45
Target Start/End: Original strand, 25631069 - 25631103
Alignment:
Q  11 ttttttaggcccgacccggcccaaaaatatgggcc 45  Q
    ||||||||||||| |||||||||||||||||||||    
T  25631069 ttttttaggcccggcccggcccaaaaatatgggcc 25631103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 42443907 - 42443865
Alignment:
Q  1 tttgggttagttttttaggcccgacccggcccaaaaatatggg 43  Q
    |||||| |||||||||||||||||||||| ||||||| |||||    
T  42443907 tttggggtagttttttaggcccgacccggtccaaaaacatggg 42443865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 5 - 45
Target Start/End: Complemental strand, 7069370 - 7069330
Alignment:
Q  5 ggttagttttttaggcccgacccggcccaaaaatatgggcc 45  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  7069370 ggttagttttttaggcccgacccggcccaaaaatatgggcc 7069330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 5 - 66
Target Start/End: Original strand, 42384276 - 42384337
Alignment:
Q  5 ggttagttttttaggcccgacccggcccaaaaatatgggccggcccatttttgacagctcta 66  Q
    ||||||||| ||||||| |  ||| ||||||||||||||||||||||||||||||| |||||    
T  42384276 ggttagtttcttaggcctggaccgacccaaaaatatgggccggcccatttttgacacctcta 42384337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 6 - 45
Target Start/End: Complemental strand, 6377111 - 6377072
Alignment:
Q  6 gttagttttttaggcccgacccggcccaaaaatatgggcc 45  Q
    |||||||||||||||||| |||||||||||||||||||||    
T  6377111 gttagttttttaggcccggcccggcccaaaaatatgggcc 6377072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 32555542 - 32555583
Alignment:
Q  1 tttgggttagttttttaggcccgacccggcccaaaaatatgg 42  Q
    |||||| ||||||||||||||||||| |||||||||||||||    
T  32555542 tttgggatagttttttaggcccgacctggcccaaaaatatgg 32555583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 5 - 45
Target Start/End: Complemental strand, 28185120 - 28185080
Alignment:
Q  5 ggttagttttttaggcccgacccggcccaaaaatatgggcc 45  Q
    |||||||||||||||||||  ||||||||||||||||||||    
T  28185120 ggttagttttttaggcccggtccggcccaaaaatatgggcc 28185080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 5 - 45
Target Start/End: Original strand, 49269313 - 49269353
Alignment:
Q  5 ggttagttttttaggcccgacccggcccaaaaatatgggcc 45  Q
    |||||||||||||||||| ||||||| ||||||||||||||    
T  49269313 ggttagttttttaggcccaacccggctcaaaaatatgggcc 49269353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 8 - 64
Target Start/End: Original strand, 54571763 - 54571819
Alignment:
Q  8 tagttttttaggcccgacccggcccaaaaatatgggccggcccatttttgacagctc 64  Q
    |||||||| |||||||||||| | ||||| | ||| |||||||||||||||||||||    
T  54571763 tagtttttgaggcccgacccgactcaaaattgtggcccggcccatttttgacagctc 54571819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 6 - 45
Target Start/End: Complemental strand, 34487496 - 34487457
Alignment:
Q  6 gttagttttttaggcccgacccggcccaaaaatatgggcc 45  Q
    |||||||||||||||||| ||||| |||||||||||||||    
T  34487496 gttagttttttaggcccggcccggtccaaaaatatgggcc 34487457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 6 - 41
Target Start/End: Complemental strand, 41235639 - 41235604
Alignment:
Q  6 gttagttttttaggcccgacccggcccaaaaatatg 41  Q
    ||||||||||||||||| ||||||||||||||||||    
T  41235639 gttagttttttaggcccaacccggcccaaaaatatg 41235604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 6 - 43
Target Start/End: Complemental strand, 31845945 - 31845908
Alignment:
Q  6 gttagttttttaggcccgacccggcccaaaaatatggg 43  Q
    |||||||||||||||||| |||| ||||||||||||||    
T  31845945 gttagttttttaggcccggcccgacccaaaaatatggg 31845908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 45
Target Start/End: Original strand, 28973050 - 28973090
Alignment:
Q  5 ggttagttttttaggcccgacccggcccaaaaatatgggcc 45  Q
    ||||||||||||||| ||| |||||| ||||||||||||||    
T  28973050 ggttagttttttaggtccggcccggctcaaaaatatgggcc 28973090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 5 - 66
Target Start/End: Complemental strand, 35540192 - 35540134
Alignment:
Q  5 ggttagttttttaggcccgacccggcccaaaaatatgggccggcccatttttgacagctcta 66  Q
    |||||||||||||||||||| ||||||||||   |||||||||||||||||| |||||||||    
T  35540192 ggttagttttttaggcccgatccggcccaaa---atgggccggcccattttttacagctcta 35540134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 5 - 45
Target Start/End: Original strand, 10371366 - 10371406
Alignment:
Q  5 ggttagttttttaggcccgacccggcccaaaaatatgggcc 45  Q
    ||||||||||||||||||| |||||||||||||||||||||    
T  10371366 ggttagttttttaggcccggcccggcccaaaaatatgggcc 10371406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 6 - 45
Target Start/End: Complemental strand, 18405750 - 18405711
Alignment:
Q  6 gttagttttttaggcccgacccggcccaaaaatatgggcc 45  Q
    ||||||||||||||||||||||| ||||||||||||||||    
T  18405750 gttagttttttaggcccgacccgacccaaaaatatgggcc 18405711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 43
Target Start/End: Original strand, 28210872 - 28210910
Alignment:
Q  5 ggttagttttttaggcccgacccggcccaaaaatatggg 43  Q
    |||||||||||||||| ||||||| ||||||||||||||    
T  28210872 ggttagttttttaggctcgacccgacccaaaaatatggg 28210910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 38; Significance: 0.000000000001; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 6 - 43
Target Start/End: Complemental strand, 25942470 - 25942433
Alignment:
Q  6 gttagttttttaggcccgacccggcccaaaaatatggg 43  Q
    ||||||||||||||||||||||||||||||||||||||    
T  25942470 gttagttttttaggcccgacccggcccaaaaatatggg 25942433  T

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Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 297710 - 297753
Alignment:
Q  1 tttgggttagttttttaggcccgacccggcccaaaaatatgggc 44  Q
    |||||| ||||||||||||||||||| |||||||||||||||||    
T  297710 tttgggctagttttttaggcccgaccgggcccaaaaatatgggc 297753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 6 - 45
Target Start/End: Complemental strand, 29646651 - 29646612
Alignment:
Q  6 gttagttttttaggcccgacccggcccaaaaatatgggcc 45  Q
    |||||||||||||||||| |||||||||||||||||||||    
T  29646651 gttagttttttaggcccggcccggcccaaaaatatgggcc 29646612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 6 - 46
Target Start/End: Original strand, 19347980 - 19348020
Alignment:
Q  6 gttagttttttaggcccgacccggcccaaaaatatgggccg 46  Q
    |||||||||||||| ||| ||||||| ||||||||||||||    
T  19347980 gttagttttttaggtccggcccggcctaaaaatatgggccg 19348020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 37; Significance: 0.000000000005; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 11546002 - 11545958
Alignment:
Q  1 tttgggttagttttttaggcccgacccggcccaaaaatatgggcc 45  Q
    |||||| ||||||||||||||| ||||||||||||||||||||||    
T  11546002 tttgggctagttttttaggcccaacccggcccaaaaatatgggcc 11545958  T

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Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 6 - 45
Target Start/End: Complemental strand, 15707301 - 15707262
Alignment:
Q  6 gttagttttttaggcccgacccggcccaaaaatatgggcc 45  Q
    |||||||||||||||||| |||||||||||||||||||||    
T  15707301 gttagttttttaggcccggcccggcccaaaaatatgggcc 15707262  T

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Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 34760393 - 34760351
Alignment:
Q  1 tttgggttagttttttaggcccgacccggcccaaaaatatggg 43  Q
    |||||| ||||||||||||||| ||||||||||||||||||||    
T  34760393 tttgggctagttttttaggcccaacccggcccaaaaatatggg 34760351  T

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Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 8 - 40
Target Start/End: Original strand, 10321493 - 10321525
Alignment:
Q  8 tagttttttaggcccgacccggcccaaaaatat 40  Q
    |||||||||||||||||||||||||||||||||    
T  10321493 tagttttttaggcccgacccggcccaaaaatat 10321525  T

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Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 5 - 45
Target Start/End: Original strand, 30044161 - 30044201
Alignment:
Q  5 ggttagttttttaggcccgacccggcccaaaaatatgggcc 45  Q
    ||||||||||||||||||| | |||||||||||||||||||    
T  30044161 ggttagttttttaggcccgtctcggcccaaaaatatgggcc 30044201  T

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Target: scaffold0110 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 6 - 45
Target Start/End: Complemental strand, 49520 - 49481
Alignment:
Q  6 gttagttttttaggcccgacccggcccaaaaatatgggcc 45  Q
    |||||||||||||||||| |||||||||||||||||||||    
T  49520 gttagttttttaggcccgtcccggcccaaaaatatgggcc 49481  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000002; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 6 - 45
Target Start/End: Complemental strand, 4158724 - 4158685
Alignment:
Q  6 gttagttttttaggcccgacccggcccaaaaatatgggcc 45  Q
    |||||||||||||||||| |||||||||||||||||||||    
T  4158724 gttagttttttaggcccggcccggcccaaaaatatgggcc 4158685  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 5 - 66
Target Start/End: Complemental strand, 3587230 - 3587161
Alignment:
Q  5 ggttagttttttaggcccgacccggcccaaaaat--------atgggccggcccatttttgacagctcta 66  Q
    |||||||||||| |||||| ||||||||||||||        ||||||||||||||||||||||||||||    
T  3587230 ggttagtttttttggcccggcccggcccaaaaatatcggccaatgggccggcccatttttgacagctcta 3587161  T

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Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 44088462 - 44088506
Alignment:
Q  1 tttgggttagttttttaggcccgacccggcccaaaaatatgggcc 45  Q
    |||||| ||||||||||| |||| |||||||||||||||||||||    
T  44088462 tttgggctagttttttagacccggcccggcccaaaaatatgggcc 44088506  T

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Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 5 - 52
Target Start/End: Original strand, 9651121 - 9651167
Alignment:
Q  5 ggttagttttttaggcccgacccggcccaaaaatatgggccggcccat 52  Q
    |||||||||||||||||||  ||||||| |||||||||||||||||||    
T  9651121 ggttagttttttaggcccggtccggccc-aaaatatgggccggcccat 9651167  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 11 - 45
Target Start/End: Complemental strand, 6837785 - 6837751
Alignment:
Q  11 ttttttaggcccgacccggcccaaaaatatgggcc 45  Q
    |||||||||||||||||| ||||||||||||||||    
T  6837785 ttttttaggcccgacccgacccaaaaatatgggcc 6837751  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 8 - 45
Target Start/End: Original strand, 2612645 - 2612682
Alignment:
Q  8 tagttttttaggcccgacccggcccaaaaatatgggcc 45  Q
    |||||||||||||||| ||||||| |||||||||||||    
T  2612645 tagttttttaggcccggcccggccaaaaaatatgggcc 2612682  T

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