View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11475_low_6 (Length: 617)
Name: NF11475_low_6
Description: NF11475
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11475_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 345; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 217 - 612
Target Start/End: Complemental strand, 2572741 - 2572343
Alignment:
| Q |
217 |
taaattacatgatttggctctatattctattgtgatttgaggcaaccttagaggataagatccttaaaagccattgcatatccttaaaaagcatcacaaa |
316 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
2572741 |
taaattacatgatttgactctatattctattgtgatttgaggcaaccttagaggataagatccttaaaagccattgcatatccttaaaaaggatcacaaa |
2572642 |
T |
|
| Q |
317 |
acgtgtctatgatgactaggtgagtgttttagttttaaatttagtgtgatc---tatatttagttttaaatttggatttttctatgcgtcactttaggtt |
413 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2572641 |
acgtgtctatgatgactaggtgagtgttttagttttaaatttagtgtgatctattatatttagttttaaatttggatttttctatgcgtcactttaggtt |
2572542 |
T |
|
| Q |
414 |
caatgtattttttatcaagttccttcatttattgaagtacgtcttctattttggttctttctaagtaacannnnnnnnccaaatttgaaacgtaatcaat |
513 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||| |
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| T |
2572541 |
caatgtattttttatcaagttccttcatttattgaagtacgtcttctattttggttctttctaagtcacattttttttccaaatttgaaacgtaatcaat |
2572442 |
T |
|
| Q |
514 |
aattttaattttagggaaaatctgacctggaaagatatgtgattatcctttggattaatttccttcttccttggtaacgtctctgggttctctgcttct |
612 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2572441 |
aattttaagtttagggaaaatctgacctggaaagatatgtgattatcctttggattaatttccttcttccttggtaacgtctctgggttctctgcttct |
2572343 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 125; E-Value: 4e-64
Query Start/End: Original strand, 23 - 207
Target Start/End: Complemental strand, 2572970 - 2572777
Alignment:
| Q |
23 |
aaaaaagctaaaacttgtataatcccttactacagttgcatgatgtagtaccattaaattaagaaagttgcatagtaatattttttggagctttaaatat |
122 |
Q |
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| T |
2572970 |
aaaaaagctaaaacttgtataatcctttactacaattgcatgatgtagtaccattaaattaagaaagttgcatagtaatattttttggagctttaaatat |
2572871 |
T |
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| Q |
123 |
gaaaaaatgaagtgtccaaagtatgaacctcggttgctgc-----ttatggattgtcc----ctatcaaccgaggaaagctcacatgaactaat |
207 |
Q |
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||||||||| |||||||| ||| |||| |||| ||||| | ||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
2572870 |
gaaaaaatgtagtgtccagagtttgaatctcgattgctacatatattatggattgtccctatctatcaaccgaggaaagctcacatgaactaat |
2572777 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000004; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 539 - 587
Target Start/End: Original strand, 44546148 - 44546196
Alignment:
| Q |
539 |
cctggaaagatatgtgattatcctttggattaatttccttcttccttgg |
587 |
Q |
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||||||| || || ||||||||||||| ||||||||||||||||||||| |
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| T |
44546148 |
cctggaatgagatatgattatcctttgtattaatttccttcttccttgg |
44546196 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 547 - 587
Target Start/End: Original strand, 44555771 - 44555811
Alignment:
| Q |
547 |
gatatgtgattatcctttggattaatttccttcttccttgg |
587 |
Q |
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||||| ||||||||||||||||||||||| ||||||||||| |
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| T |
44555771 |
gatatatgattatcctttggattaatttcgttcttccttgg |
44555811 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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