View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11475_low_60 (Length: 210)
Name: NF11475_low_60
Description: NF11475
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11475_low_60 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 89; Significance: 4e-43; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 89; E-Value: 4e-43
Query Start/End: Original strand, 114 - 210
Target Start/End: Complemental strand, 9562846 - 9562750
Alignment:
| Q |
114 |
ttctgtcacagaacacagcatgtaactgaacaacctctcacctgtgttcagagtctgagcctgaggtatgttccgttccaacactttggtttgttta |
210 |
Q |
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| T |
9562846 |
ttctgtcacagaatacagcatgtaactgaacaacctctcacctgtgttcagagtctgagcctgaggtatgttccgttccaacactttggcttgttta |
9562750 |
T |
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Target: chr2; HSP #2
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 115 - 210
Target Start/End: Complemental strand, 9570942 - 9570850
Alignment:
| Q |
115 |
tctgtcacagaacacagcatgtaactgaacaacctctcacctgtgttcagagtctgagcctgaggtatgttccgttccaacactttggtttgttta |
210 |
Q |
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| T |
9570942 |
tctgccacagaacacaacatttaactgaacaacctctca---gtgttcagagtctgatactgaggtatgttctgttccaacactttggtttgttta |
9570850 |
T |
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