View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11475_low_8 (Length: 591)
Name: NF11475_low_8
Description: NF11475
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11475_low_8 |
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Alignment Details
Target: chr5 (Bit Score: 357; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 209 - 573
Target Start/End: Complemental strand, 9418200 - 9417836
Alignment:
| Q |
209 |
ctatgatgctttggaagagcaactttagaaggtcatccaactcagaggtaataataattttaacatgttttttcttacttgaaaagtgatatgtttaact |
308 |
Q |
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| T |
9418200 |
ctatgatgctttggaagagcaactttagaaggtcatccaactcagaggtaataataattttaacatgttttttcttaattgaaaagtgacatgtttaact |
9418101 |
T |
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| Q |
309 |
aacaattttttataaaccttgtagcctattggtagtgctgtattgactgggataactaaaaagttatttcaaagtccatctcacagatcaaagatacctg |
408 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9418100 |
aacaattttttataaaccttgtagcctattggtagtgctgtattgactgggataactaaaaagttatttcaaagtccatctcacagatcaaagatacctg |
9418001 |
T |
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| Q |
409 |
ttaccaatccatatttgcaaccacgtcccagtccagttgggagaggaaagacaagggtcaacgaagtgcgcccattcattccaagagtcatgaatctcac |
508 |
Q |
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| T |
9418000 |
ttaccaatccatatttgcaaccacgtcccagtccagttgggagaggaaagacaagggtcaacgaagtgcgcccattcattccaagagtcatgaatctcac |
9417901 |
T |
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| Q |
509 |
tctcccaagggttattaccaatatcactcaatataaatatatagatattttgattattatgttct |
573 |
Q |
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| T |
9417900 |
tctcccaagggttattaccaatatcactcaatataaatatatagatattttgattattatgttct |
9417836 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 341; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 205 - 573
Target Start/End: Original strand, 12003378 - 12003745
Alignment:
| Q |
205 |
tctgctatgatgctttggaagagcaactttagaaggtcatccaactcagaggtaataataattttaacatgttttttcttacttgaaaagtgatatgttt |
304 |
Q |
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| T |
12003378 |
tctgctatgatgctttgcaagagcaactttagaaggtcatccaactcagaggtaataataattt-aacatgttttttcttacttgaaaagtgatatgttt |
12003476 |
T |
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| Q |
305 |
aactaacaattttttataaaccttgtagcctattggtagtgctgtattgactgggataactaaaaagttatttcaaagtccatctcacagatcaaagata |
404 |
Q |
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| T |
12003477 |
aactaacaattttttataaaccttgtagcctattggtagtgctgtattgactaggataactaaaaagttatttcaaagtccatctcacagatcaaagata |
12003576 |
T |
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| Q |
405 |
cctgttaccaatccatatttgcaaccacgtcccagtccagttgggagaggaaagacaagggtcaacgaagtgcgcccattcattccaagagtcatgaatc |
504 |
Q |
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| T |
12003577 |
catgttaccaatccatatttgcaaccacgtcccagtccagttgggagaggaaagacaagggtcaacgaagtgcgcccattcattccaagagtcatgaatc |
12003676 |
T |
|
| Q |
505 |
tcactctcccaagggttattaccaatatcactcaatataaatatatagatattttgattattatgttct |
573 |
Q |
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| T |
12003677 |
tcactctaccaagggttattatcaatatcactcaatataaatatatagatattttgattattatgttct |
12003745 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 160; E-Value: 6e-85
Query Start/End: Original strand, 13 - 212
Target Start/End: Original strand, 12001940 - 12002139
Alignment:
| Q |
13 |
aaggcaacagaaatcattgatgactttaacaatgttattgtggatgtgtctgacagtgatgatgacacaaaaggaaagaaaatgcataggtcagcaatga |
112 |
Q |
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| T |
12001940 |
aaggcaacaaaaatcattgatgactttaacaatgttattgtggatgtgtctgacggtgatgatgacacaaaaggaaagaaagtgcataggtcagtgatga |
12002039 |
T |
|
| Q |
113 |
atggaatgtataacaacactatgtttgaaatgaaaccacctctcccaaaagagtggaccacaggtgaaaaatcaggtgttaaggacaacacttctgctat |
212 |
Q |
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| T |
12002040 |
atggaatgtataataacactatatttggaatgaaaccacctctcctaaaagagtggaccacaggtgaaaaatcaggtgttaaggacaacacttttgctat |
12002139 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 310; Significance: 1e-174; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 17 - 567
Target Start/End: Complemental strand, 17813854 - 17813318
Alignment:
| Q |
17 |
caacagaaatcattgatgactttaacaatgttattgtggatgtgtctgacagtgatgatgacacaaaaggaaagaaaatgcataggtcagcaatgaatgg |
116 |
Q |
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||||| ||||| |||||||| |||||||||||||||||||||||||||||| |||| |||||||||||| ||||||| |||||||||||| ||||||| |
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| T |
17813854 |
caacataaatctttgatgaccttaacaatgttattgtggatgtgtctgacaatgataatgacacaaaagaaaagaaagtgcataggtcagtgttgaatgg |
17813755 |
T |
|
| Q |
117 |
aatgtataacaacactatgtttgaaatgaaaccacctctcccaaaagagtggaccacaggtgaaaaatcaggtgttaaggacaacacttctgctatgatg |
216 |
Q |
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||||||| ||||| ||| |||| |||||||||| |||||| ||||||||||| |||||||| ||||||||||| || |||||||||| |
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| T |
17813754 |
aatgtatggcaacattatatttggaatgaaaccaactctcctaaaagagtggaacacaggtg------------ttaaggacaacgattttgctatgatg |
17813667 |
T |
|
| Q |
217 |
ctttggaagagcaactttagaaggtcatccaactcagaggtaataataattttaacatgttttttcttacttgaaaagtgatatgtttaactaacaattt |
316 |
Q |
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|||| ||||||||||| | ||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||| |||| || | |
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| T |
17813666 |
ttttgcaagagcaactt-ataaggtcatccaactcagaggtaataattattttaacgtgttttttcttacttgaaaagtgatatgtttaattaacgatct |
17813568 |
T |
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| Q |
317 |
tttataaaccttgtagcctattggtagtgctgtattgactgggataactaaaaagttatttcaaagtccatctcacagatcaaagatacctgttaccaat |
416 |
Q |
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|| |||| |||||||||||||||| ||| ||| |||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||| |
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| T |
17813567 |
tt-ataatccttgtagcctattggcagtactggattgactgggataactaaaaagttatttcaaagtccatctcacatatcaaggatacctgttaccaat |
17813469 |
T |
|
| Q |
417 |
ccatatttgcaaccacgtcccagtccagttgggagaggaaagacaagggtcaacgaagtgcgcccattcattccaagagtcatgaatctcactctcccaa |
516 |
Q |
| |
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|||||| ||||||||||| |||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| | |||||| |
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| T |
17813468 |
ccatatatgcaaccacgttgcagtttatttgggagaggaaagacaagggtcaacgaagtgcgcccattcattccaagagtcattaatctcattatcccaa |
17813369 |
T |
|
| Q |
517 |
gggttattaccaatatcactcaatataaatatatagatattttgattatta |
567 |
Q |
| |
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|||||||||||||||||| ||| |||||||||||||||||||||||||||| |
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| T |
17813368 |
gggttattaccaatatcattcattataaatatatagatattttgattatta |
17813318 |
T |
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