View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11476_low_1 (Length: 351)
Name: NF11476_low_1
Description: NF11476
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11476_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 328; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 1 - 332
Target Start/End: Original strand, 50121677 - 50122008
Alignment:
| Q |
1 |
tcaagtattcctccaataatcttgtatgtcaaagagttccctttgtaaaacacatccattccattgctattcaataaaagaacaccatgtgcataaggtt |
100 |
Q |
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| T |
50121677 |
tcaagtattcctccaataatcttgtatgtcaaagagttccctttgtaaaacacatccattccattgctattcaacaaaagaacaccatgtgcataaggtt |
50121776 |
T |
|
| Q |
101 |
ttccaccataatttctgagatccatgtatacaggatgtgatccatataaatcagaattgaggttaatagctgatatatcagttgtatacaaagtgtaagg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50121777 |
ttccaccataatttctgagatccatgtatacaggatgtgatccatataaatcagaattgaggttaatagctgatatatcagttgtatacaaagtgtaagg |
50121876 |
T |
|
| Q |
201 |
atcatttggatgtaacttcattccatttggttgtgtgttctctcctaaaccatacaaagaagcatttttgggcaatttggtagaaatttctaagtattgg |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50121877 |
atcatttggatgtaacttcattccatttggttgtgtgttctctcctaaaccatacaaagaagcatttttgggcaatttggtagaaatttctaagtattgg |
50121976 |
T |
|
| Q |
301 |
tctttgaagactaaaggacgaaatgagtctga |
332 |
Q |
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| T |
50121977 |
tctttgaagactaaaggacgaaatgagtctga |
50122008 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 153; E-Value: 5e-81
Query Start/End: Original strand, 1 - 332
Target Start/End: Original strand, 50112096 - 50112430
Alignment:
| Q |
1 |
tcaagtattcctccaataatcttgtatgtcaaagagttccctttgtaaaacacatccattccattgctattcaataaaagaacaccatgtgcataaggtt |
100 |
Q |
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||||||| ||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||| || | |||||||||||||| ||| | |
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| T |
50112096 |
tcaagtacccctccaataatcttgtacgtcaaagaggtccctttgtaaaacacatccattccattgctattcaacaacaaaacaccatgtgcattaggct |
50112195 |
T |
|
| Q |
101 |
ttccacc---ataatttctgagatccatgtatacaggatgtgatccatataaatcagaattgaggttaatagctgatatatcagttgtatacaaagtgta |
197 |
Q |
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| T |
50112196 |
tgccaccttcatgatttctaagatccatgtatacaggatgagacccatatagatcagtgttgagattaatggctgctacatcagtggtatacaaagtata |
50112295 |
T |
|
| Q |
198 |
aggatcatttggatgtaacttcattccatttggttgtgtgttctctcctaaaccatacaaagaagcatttttgggcaatttggtagaaatttctaagtat |
297 |
Q |
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||||||||| |||| ||||| || |||| ||| |||| ||||||||| |||||||||| |||||||| |||||| | ||| ||||||||||| |||||| |
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| T |
50112296 |
aggatcattaggatacaactttatcccatgtggctgtgagttctctcccaaaccatacagagaagcatctttgggaagtttagtagaaatttccaagtat |
50112395 |
T |
|
| Q |
298 |
tggtctttgaagactaaaggacgaaatgagtctga |
332 |
Q |
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| T |
50112396 |
tggtctttgaagaccaatggaccaaatgggtctga |
50112430 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 108; Significance: 3e-54; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 13 - 308
Target Start/End: Complemental strand, 23931095 - 23930800
Alignment:
| Q |
13 |
ccaataatcttgtatgtcaaagagttccctttgtaaaacacatccattccattgctattcaataaaagaacaccatgtgcataaggttttccaccataat |
112 |
Q |
| |
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||||||| ||| || |||||||| | ||||| |||||||||||||||||||| |||||||| || | |||| |||||||| ||| ||||||||||| || |
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| T |
23931095 |
ccaataaccttataagtcaaagaagttcctttataaaacacatccattccattactattcaacaacaaaacagcatgtgcagaagcttttccaccattat |
23930996 |
T |
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| Q |
113 |
ttctgagatccatgtatacaggatgtgatccatataaatcagaattgaggttaatagctgatatatcagttgtatacaaagtgtaaggatcatttggatg |
212 |
Q |
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|||| |||||||| || | |||||| |||||||||||||||| ||| || ||||||||||| ||||| |||||||| ||||| ||||| ||| |||||| |
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| T |
23930995 |
ttctcagatccatatacataggatgagatccatataaatcagcattaagattaatagctgaaatatctgttgtatataaagtataagggtcacttggata |
23930896 |
T |
|
| Q |
213 |
taacttcattccatttggttgtgtgttctctcctaaaccatacaaagaagcatttttgggcaatttggtagaaatttctaagtattggtctttgaa |
308 |
Q |
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||| || || |||| ||||||||| |||||||| |||||||| ||||| |||| ||| || ||||| || ||||| || | |||||||||||||| |
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| T |
23930895 |
taatttaatcccatgtggttgtgtattctctcccaaaccatataaagatgcatctttaggtaattttgttgaaatctcaagatattggtctttgaa |
23930800 |
T |
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