View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11476_low_2 (Length: 311)
Name: NF11476_low_2
Description: NF11476
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11476_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 276; Significance: 1e-154; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 10 - 297
Target Start/End: Complemental strand, 37958892 - 37958605
Alignment:
| Q |
10 |
gacatcagagagggattcaatttctttttaatagtagaggcaatatttagtgagaataacttttatgtgagaattatcggaatacatatcgacccttata |
109 |
Q |
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| T |
37958892 |
gacatcggagagggatccaatttctttttaatagtagaggcaatatttagtgagaataacttttatgtgagaattatcggaatacatatcgacccttata |
37958793 |
T |
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| Q |
110 |
ttaaaaatagatggttgagattaaaagtcatcttttaaacaacacatgttcgtttcttttttcatccatcggccacctaccgatgacacagtagctcctg |
209 |
Q |
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| T |
37958792 |
ttaaaaatagatgtttgagattaaaagtcatcttttaaacaacacatgttcgtttcttttttcatccatcggccacctaccgatgacacagtagctcctg |
37958693 |
T |
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| Q |
210 |
cagttttatgattgatgaaggagcagttttgaaatggtggttgtaactcagattgattgctttgagattgcaaagctgtccctgatgt |
297 |
Q |
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| T |
37958692 |
cagttttatgattgatgaaggagcagttttgaaatggtggttgtaactcagattgattgctttgagattgcaaagctgtccctgatgt |
37958605 |
T |
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Target: chr4 (Bit Score: 47; Significance: 8e-18; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 70 - 160
Target Start/End: Original strand, 25092009 - 25092099
Alignment:
| Q |
70 |
ttttatgtgagaattatcggaatacatatcgacccttatattaaaaatagatggttgagattaaaagtcatcttttaaacaacacatgttc |
160 |
Q |
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| T |
25092009 |
ttttatgtgagaataatgagaatgcatatggacccttagattaaaaataaatggttatgattaaaagccctcttttaaacaacacatgttc |
25092099 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 77 - 160
Target Start/End: Original strand, 39111150 - 39111232
Alignment:
| Q |
77 |
tgagaattatcggaatacatatcgacccttatattaaaaatagatggttgagattaaaagtcatcttttaaacaacacatgttc |
160 |
Q |
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| T |
39111150 |
tgagaataataggaatgcttattgacccttagattagaattaaatgatcgagattaaaagtc-tcttttaaacaacacatgttc |
39111232 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 72 - 160
Target Start/End: Original strand, 30661131 - 30661219
Alignment:
| Q |
72 |
ttatgtgagaattatcggaatacatatcgacccttatattaaaaatagatggttgagattaaaagtcatcttttaaacaacacatgttc |
160 |
Q |
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| T |
30661131 |
ttatgtgagaataatgagaacgcatatggatccttagattaaaaataaatggttatgattaaaagtcctcttttaaacaacacatgttc |
30661219 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 74 - 160
Target Start/End: Original strand, 41413633 - 41413718
Alignment:
| Q |
74 |
atgtgagaattatcggaatacatatcgacccttatattaaaaatagatggttgagattaaaagtcatcttttaaacaacacatgttc |
160 |
Q |
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| T |
41413633 |
atgtgaaaataataggaatgcttattgacccttagatcaaaattaaatgatcgagattaaaagtc-tcttttaaacaacacatgttc |
41413718 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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