View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11477_high_3 (Length: 632)

Name: NF11477_high_3
Description: NF11477
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11477_high_3
NF11477_high_3
[»] chr8 (2 HSPs)
chr8 (92-603)||(3427967-3428478)
chr8 (24-93)||(3427875-3427944)
[»] chr5 (8 HSPs)
chr5 (94-236)||(9211459-9211606)
chr5 (94-236)||(9369879-9370026)
chr5 (55-90)||(19242401-19242436)
chr5 (48-90)||(9211389-9211431)
chr5 (57-90)||(12560227-12560260)
chr5 (56-88)||(12556985-12557017)
chr5 (94-138)||(12560154-12560198)
chr5 (94-138)||(19242464-19242508)
[»] chr3 (7 HSPs)
chr3 (55-90)||(20798780-20798815)
chr3 (48-90)||(9450789-9450831)
chr3 (48-90)||(17724638-17724680)
chr3 (48-90)||(19025867-19025909)
chr3 (48-90)||(26640805-26640847)
chr3 (48-90)||(28838401-28838443)
chr3 (58-90)||(28830446-28830478)
[»] chr7 (1 HSPs)
chr7 (48-90)||(19545424-19545466)
[»] chr1 (2 HSPs)
chr1 (48-90)||(1466862-1466904)
chr1 (48-90)||(35923325-35923367)


Alignment Details
Target: chr8 (Bit Score: 476; Significance: 0; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 476; E-Value: 0
Query Start/End: Original strand, 92 - 603
Target Start/End: Original strand, 3427967 - 3428478
Alignment:
Q  92 aggtgcaatggaggtcacacgcctagacgatgggccttcttgatcacaacaccttccaggtaagtatgttgcaatgtgtcacacacttctattttataac 191  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||    
T  3427967 aggtgcaatggaggtcacacgcctagacgatgggccttcttgatcacaacacctgccaggtaagtatgctgcaatgtgtcacacacttctattttataac 3428066  T
Q  192 tcatgctccacattattcactacaaatcttccgatgtgggacttatattatgacattctaaacaccattcaagtgtcagcagttcataccctagctcaca 291  Q
    |||||||||||||||||||||| ||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  3428067 tcatgctccacattattcactataaatcttccgatgtgggacttttattattacattctaaacaccattcaagtgtcagcagttcataccctagctcaca 3428166  T
Q  292 catttgctactccattagatccaaatagacagagcatgtttaatcatattgcagttgttgaatccgatattttttgttgaactgataatatgcgttacaa 391  Q
    ||||||| ||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3428167 catttgccactccattagatccaaatagacaaagtatgtttaatcatattgcagttgttgaatccgatattttttgttgaactgataatatgcgttacaa 3428266  T
Q  392 aggctatgaataaacttggtctcactgatgactaattttgtgtagaaaaacttcaaatgtcttactcaaaaagctcttgcagaaaccaattaaggaatgt 491  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3428267 aggctatgaataaacttggtctcactgatgactaattttgtgtagaaaaacttcaaatgtcttactcaaaaagctcttgcagaaaccaattaaggaatgt 3428366  T
Q  492 ttttgctccttgatctcctaactttccctctattttctatttttctagaacagttatgtatatcatgtaaggaaaccttttctagtgccattactatacc 591  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3428367 ttttgctccttgatctcctaactttccctatattttctatttttctagaacagttatgtatatcatgtaaggaaaccttttctagtgccattactatacc 3428466  T
Q  592 tatttttacttt 603  Q
    ||||||||||||    
T  3428467 tatttttacttt 3428478  T

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Target: chr8; HSP #2
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 24 - 93
Target Start/End: Original strand, 3427875 - 3427944
Alignment:
Q  24 aagatgagcacagtatattagcatgcccctactgcaacaaattatgatgtaagctccaccacttgggcag 93  Q
    |||||||||||| ||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||    
T  3427875 aagatgagcacaatatattagcatgcccctactgcaacaaattacgatgtaaactccaccacttgggcag 3427944  T

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Target: chr5 (Bit Score: 56; Significance: 7e-23; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 94 - 236
Target Start/End: Original strand, 9211459 - 9211606
Alignment:
Q  94 gtgcaatggaggtcacacgcctagacgatgggccttcttgatcaca-----acaccttccaggtaagtatgttgcaatgtgtcacacacttctattttat 188  Q
    |||||||| |||||||  |||||| | |||||||||| |||||||      || || |||||||||||||||| |||||| ||||||| |||| ||||||    
T  9211459 gtgcaatgaaggtcacttgcctaggccatgggccttcctgatcacccattgaccccatccaggtaagtatgttacaatgtatcacacaattctgttttat 9211558  T
Q  189 aactcatgctccacattattcactacaaatcttccgatgtgggactta 236  Q
    ||||||||||||| |  |||||||| ||| ||||||||||||||||||    
T  9211559 aactcatgctccataacattcactataaaacttccgatgtgggactta 9211606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 94 - 236
Target Start/End: Complemental strand, 9370026 - 9369879
Alignment:
Q  94 gtgcaatggaggtcacacgcctagacgatgggccttcttgatcaca-----acaccttccaggtaagtatgttgcaatgtgtcacacacttctattttat 188  Q
    |||||||| |||||||  |||||| | ||||||||| ||||||||      || || ||||||||||||||||||||||  ||||||| |||| ||||||    
T  9370026 gtgcaatgaaggtcacttgcctaggccatgggcctttttgatcacccattgaccccatccaggtaagtatgttgcaatgaatcacacaattctcttttat 9369927  T
Q  189 aactcatgctccacattattcactacaaatcttccgatgtgggactta 236  Q
    ||||||||||||| |  |||||||| ||| ||||||||||||||||||    
T  9369926 aactcatgctccataacattcactataaaacttccgatgtgggactta 9369879  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 55 - 90
Target Start/End: Original strand, 19242401 - 19242436
Alignment:
Q  55 ctgcaacaaattatgatgtaagctccaccacttggg 90  Q
    |||||||||||||||||||| |||||||||||||||    
T  19242401 ctgcaacaaattatgatgtaggctccaccacttggg 19242436  T

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Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 48 - 90
Target Start/End: Original strand, 9211389 - 9211431
Alignment:
Q  48 gcccctactgcaacaaattatgatgtaagctccaccacttggg 90  Q
    ||||| || |||||||||||||||||| |||||||||||||||    
T  9211389 gcccccacagcaacaaattatgatgtaggctccaccacttggg 9211431  T

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Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 57 - 90
Target Start/End: Complemental strand, 12560260 - 12560227
Alignment:
Q  57 gcaacaaattatgatgtaagctccaccacttggg 90  Q
    |||||||||||||||||| |||||||||||||||    
T  12560260 gcaacaaattatgatgtaggctccaccacttggg 12560227  T

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Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 56 - 88
Target Start/End: Complemental strand, 12557017 - 12556985
Alignment:
Q  56 tgcaacaaattatgatgtaagctccaccacttg 88  Q
    ||||||||||||||||||| |||||||||||||    
T  12557017 tgcaacaaattatgatgtaggctccaccacttg 12556985  T

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Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 94 - 138
Target Start/End: Complemental strand, 12560198 - 12560154
Alignment:
Q  94 gtgcaatggaggtcacacgcctagacgatgggccttcttgatcac 138  Q
    ||||||||||||||||  |||||| | ||||||||||||||||||    
T  12560198 gtgcaatggaggtcacttgcctaggccatgggccttcttgatcac 12560154  T

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Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 94 - 138
Target Start/End: Original strand, 19242464 - 19242508
Alignment:
Q  94 gtgcaatggaggtcacacgcctagacgatgggccttcttgatcac 138  Q
    ||||||||||||||||  |||||| | ||||||||||||||||||    
T  19242464 gtgcaatggaggtcacttgcctaggccatgggccttcttgatcac 19242508  T

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Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 55 - 90
Target Start/End: Original strand, 20798780 - 20798815
Alignment:
Q  55 ctgcaacaaattatgatgtaagctccaccacttggg 90  Q
    |||||||||||||||||||| |||||||||||||||    
T  20798780 ctgcaacaaattatgatgtaggctccaccacttggg 20798815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 48 - 90
Target Start/End: Complemental strand, 9450831 - 9450789
Alignment:
Q  48 gcccctactgcaacaaattatgatgtaagctccaccacttggg 90  Q
    ||||| || |||||||||||||||||| |||||||||||||||    
T  9450831 gcccccacagcaacaaattatgatgtaggctccaccacttggg 9450789  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 48 - 90
Target Start/End: Complemental strand, 17724680 - 17724638
Alignment:
Q  48 gcccctactgcaacaaattatgatgtaagctccaccacttggg 90  Q
    ||||| || |||||||||||||||||| |||||||||||||||    
T  17724680 gcccccacagcaacaaattatgatgtaggctccaccacttggg 17724638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 48 - 90
Target Start/End: Complemental strand, 19025909 - 19025867
Alignment:
Q  48 gcccctactgcaacaaattatgatgtaagctccaccacttggg 90  Q
    ||||| || |||||||||||||||||| |||||||||||||||    
T  19025909 gcccccacagcaacaaattatgatgtaggctccaccacttggg 19025867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 48 - 90
Target Start/End: Complemental strand, 26640847 - 26640805
Alignment:
Q  48 gcccctactgcaacaaattatgatgtaagctccaccacttggg 90  Q
    ||||| ||||||||||||||||||||| | |||||||||||||    
T  26640847 gcccccactgcaacaaattatgatgtaggttccaccacttggg 26640805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 48 - 90
Target Start/End: Original strand, 28838401 - 28838443
Alignment:
Q  48 gcccctactgcaacaaattatgatgtaagctccaccacttggg 90  Q
    ||||| || |||||||||||||||||| |||||||||||||||    
T  28838401 gcccccacagcaacaaattatgatgtaggctccaccacttggg 28838443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 58 - 90
Target Start/End: Original strand, 28830446 - 28830478
Alignment:
Q  58 caacaaattatgatgtaagctccaccacttggg 90  Q
    ||||||||||||||||| |||||||||||||||    
T  28830446 caacaaattatgatgtaggctccaccacttggg 28830478  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 48 - 90
Target Start/End: Original strand, 19545424 - 19545466
Alignment:
Q  48 gcccctactgcaacaaattatgatgtaagctccaccacttggg 90  Q
    ||||| || |||||||||||||||||| |||||||||||||||    
T  19545424 gcccccacagcaacaaattatgatgtaggctccaccacttggg 19545466  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000006; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 48 - 90
Target Start/End: Complemental strand, 1466904 - 1466862
Alignment:
Q  48 gcccctactgcaacaaattatgatgtaagctccaccacttggg 90  Q
    ||||| || |||||||||||||||||| |||||||||||||||    
T  1466904 gcccccacagcaacaaattatgatgtaggctccaccacttggg 1466862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 48 - 90
Target Start/End: Complemental strand, 35923367 - 35923325
Alignment:
Q  48 gcccctactgcaacaaattatgatgtaagctccaccacttggg 90  Q
    ||||| || |||||||||||||||||| |||||||||||||||    
T  35923367 gcccccacagcaacaaattatgatgtaggctccaccacttggg 35923325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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