View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11477_high_4 (Length: 446)
Name: NF11477_high_4
Description: NF11477
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11477_high_4 |
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Alignment Details
Target: chr2 (Bit Score: 323; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 1 - 427
Target Start/End: Original strand, 17234021 - 17234439
Alignment:
| Q |
1 |
aaatccac-ctaagtatcaaagagacgatgatattaggatcactttaaatatcaaaataacacgtttctcaaaaatgacaaccaaaaggataaaattttc |
99 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||| ||||||||| |
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| T |
17234021 |
aaatccactctaagtatcaaagagacgatgatattaggatcactttaaatatcaaaataacacgtctctcaaaaatgataaccaaaaggacaaaattttc |
17234120 |
T |
|
| Q |
100 |
tcgaaacattataacagaaaaggaagaagtggctcacaagcgcatcgaacattaacgaaaaagaaaacttagaaatacctaaagttttgatgtactttag |
199 |
Q |
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| T |
17234121 |
tcgaaatattataacagaaaaggaagaagtggctcacaagcgcatcgaacattaacgaaagagacaacttagaaatacctaaagttttgatgtactttag |
17234220 |
T |
|
| Q |
200 |
aaagaaatgtgagtactcattatataatgttgaaaactagccgatatgtgtaaactaaac---gtgaaactttataatttttcactctactattcaaaat |
296 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
17234221 |
aaagaaatgtgagtactcattatataatgttgaaaagtagccgatatgcgtaaactaaacgatgtgaaactttataatttttcactctactattcaaaat |
17234320 |
T |
|
| Q |
297 |
tttgatctctataaattttattttcaattcagacgctcttgtgttccaacaatacataaattaatcgtgaaaagataagtatgacgagtaagaaagactt |
396 |
Q |
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||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
17234321 |
tttgatctctataaattatattttcaattcagacgc--------tccaacaatacataaattaatcgtgaaaagataagtatgacgagt----aagactt |
17234408 |
T |
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| Q |
397 |
aaaacaatgatatatctagtctagttaagtt |
427 |
Q |
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|| |||||||||||||||||||||||||||| |
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| T |
17234409 |
aagacaatgatatatctagtctagttaagtt |
17234439 |
T |
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