View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11477_low_1 (Length: 781)

Name: NF11477_low_1
Description: NF11477
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11477_low_1
NF11477_low_1
[»] chr5 (31 HSPs)
chr5 (1-765)||(3114023-3114790)
chr5 (369-536)||(3120293-3120458)
chr5 (91-219)||(37873588-37873716)
chr5 (69-219)||(35310477-35310627)
chr5 (12-219)||(27336722-27336930)
chr5 (118-210)||(25663009-25663101)
chr5 (8-219)||(32269663-32269875)
chr5 (69-216)||(15291954-15292101)
chr5 (90-219)||(13166859-13166988)
chr5 (69-210)||(33691983-33692124)
chr5 (69-209)||(43115386-43115525)
chr5 (686-765)||(3120567-3120646)
chr5 (69-219)||(43129563-43129713)
chr5 (120-210)||(38875676-38875766)
chr5 (69-210)||(14423716-14423857)
chr5 (13-219)||(35455985-35456192)
chr5 (122-202)||(26212564-26212644)
chr5 (1-169)||(433371-433540)
chr5 (145-210)||(34335375-34335440)
chr5 (123-216)||(32230489-32230582)
chr5 (143-219)||(42921726-42921802)
chr5 (162-212)||(430638-430688)
chr5 (227-285)||(37873747-37873805)
chr5 (134-195)||(8858969-8859030)
chr5 (120-210)||(8100590-8100680)
chr5 (140-212)||(14436536-14436605)
chr5 (166-216)||(14723269-14723319)
chr5 (229-293)||(23023527-23023591)
chr5 (226-293)||(32269905-32269972)
chr5 (118-212)||(9829331-9829423)
chr5 (148-213)||(26577407-26577472)
[»] chr4 (33 HSPs)
chr4 (8-219)||(31847116-31847328)
chr4 (69-212)||(53619622-53619765)
chr4 (96-210)||(55933417-55933531)
chr4 (12-213)||(50000795-50000998)
chr4 (83-219)||(56462049-56462184)
chr4 (69-219)||(132414-132566)
chr4 (124-205)||(23255747-23255828)
chr4 (97-210)||(48656866-48656979)
chr4 (99-219)||(30940697-30940816)
chr4 (95-210)||(12918326-12918441)
chr4 (69-219)||(25504324-25504472)
chr4 (81-219)||(26521517-26521655)
chr4 (103-220)||(50462908-50463025)
chr4 (100-219)||(600651-600770)
chr4 (121-219)||(34107674-34107774)
chr4 (52-182)||(53170573-53170703)
chr4 (225-293)||(45661623-45661691)
chr4 (99-210)||(12053451-12053562)
chr4 (83-210)||(16957580-16957707)
chr4 (143-219)||(43849350-43849426)
chr4 (165-212)||(24719970-24720017)
chr4 (156-219)||(50483211-50483274)
chr4 (55-165)||(38535500-38535610)
chr4 (121-219)||(46440869-46440967)
chr4 (134-210)||(28739943-28740020)
chr4 (167-219)||(3330025-3330077)
chr4 (227-283)||(30940841-30940897)
chr4 (164-219)||(7536594-7536649)
chr4 (227-293)||(4419195-4419261)
chr4 (149-195)||(46391323-46391369)
chr4 (134-196)||(52022166-52022228)
chr4 (149-210)||(6865828-6865889)
chr4 (140-213)||(45386060-45386133)
[»] chr6 (25 HSPs)
chr6 (69-219)||(33220639-33220789)
chr6 (98-219)||(17249262-17249383)
chr6 (69-219)||(959609-959759)
chr6 (69-212)||(357645-357788)
chr6 (69-217)||(45605-45753)
chr6 (12-219)||(4206466-4206674)
chr6 (69-219)||(34304525-34304675)
chr6 (69-213)||(28008915-28009062)
chr6 (12-293)||(32115650-32115926)
chr6 (69-219)||(34415465-34415615)
chr6 (8-195)||(12401384-12401572)
chr6 (95-203)||(34168913-34169021)
chr6 (113-219)||(24016366-24016472)
chr6 (81-207)||(34554217-34554343)
chr6 (139-219)||(4165920-4166000)
chr6 (69-210)||(28543413-28543554)
chr6 (84-209)||(29338022-29338147)
chr6 (8-151)||(20693467-20693610)
chr6 (123-212)||(3714953-3715042)
chr6 (228-286)||(29338189-29338247)
chr6 (117-210)||(28625968-28626062)
chr6 (225-293)||(28625863-28625930)
chr6 (129-212)||(6225108-6225191)
chr6 (227-286)||(28009096-28009155)
chr6 (144-213)||(7200540-7200607)
[»] chr1 (27 HSPs)
chr1 (69-219)||(34644595-34644745)
chr1 (52-219)||(19035476-19035643)
chr1 (13-202)||(50161288-50161478)
chr1 (8-219)||(28040993-28041205)
chr1 (12-219)||(29169664-29169871)
chr1 (59-219)||(25375751-25375911)
chr1 (68-218)||(42919890-42920039)
chr1 (6-219)||(45659511-45659726)
chr1 (99-210)||(31737281-31737392)
chr1 (69-210)||(2764517-2764658)
chr1 (13-220)||(37200011-37200217)
chr1 (144-209)||(21473042-21473107)
chr1 (118-217)||(20259774-20259873)
chr1 (10-219)||(4861857-4862067)
chr1 (121-219)||(22346924-22347022)
chr1 (95-212)||(16500070-16500187)
chr1 (120-219)||(2898731-2898833)
chr1 (123-216)||(36486918-36487011)
chr1 (227-288)||(38731546-38731607)
chr1 (120-196)||(23043929-23044005)
chr1 (69-188)||(37932146-37932264)
chr1 (170-219)||(24177540-24177589)
chr1 (130-211)||(50314613-50314694)
chr1 (124-191)||(35387643-35387710)
chr1 (158-219)||(7213279-7213341)
chr1 (149-183)||(19035424-19035458)
chr1 (177-219)||(47459711-47459753)
[»] chr8 (24 HSPs)
chr8 (71-210)||(38815332-38815471)
chr8 (69-212)||(39434703-39434846)
chr8 (69-219)||(500256-500406)
chr8 (1-219)||(35739846-35740064)
chr8 (8-219)||(25021680-25021892)
chr8 (69-219)||(3187998-3188148)
chr8 (52-219)||(24125057-24125224)
chr8 (99-219)||(6592604-6592724)
chr8 (10-213)||(8619849-8620047)
chr8 (84-219)||(10189572-10189707)
chr8 (98-212)||(4073571-4073685)
chr8 (134-204)||(8882371-8882441)
chr8 (116-212)||(28196228-28196324)
chr8 (99-179)||(37517163-37517243)
chr8 (223-286)||(25021919-25021982)
chr8 (117-288)||(42922103-42922273)
chr8 (123-219)||(6618313-6618409)
chr8 (96-172)||(11611199-11611275)
chr8 (131-209)||(10556283-10556361)
chr8 (227-293)||(38815226-38815292)
chr8 (114-198)||(4699919-4700002)
chr8 (181-220)||(43824017-43824056)
chr8 (140-202)||(39671170-39671232)
chr8 (97-154)||(8390234-8390291)
[»] chr7 (33 HSPs)
chr7 (69-212)||(28517215-28517358)
chr7 (12-210)||(4501296-4501495)
chr7 (69-219)||(21326766-21326916)
chr7 (12-218)||(45613712-45613919)
chr7 (81-219)||(32584630-32584768)
chr7 (8-219)||(43856903-43857115)
chr7 (52-216)||(982981-983145)
chr7 (12-210)||(5825311-5825508)
chr7 (107-219)||(19277322-19277434)
chr7 (68-219)||(27521500-27521651)
chr7 (69-219)||(2904394-2904544)
chr7 (52-212)||(3676675-3676836)
chr7 (123-219)||(30216040-30216136)
chr7 (84-219)||(22198015-22198150)
chr7 (84-219)||(22239671-22239806)
chr7 (81-219)||(24527618-24527756)
chr7 (134-219)||(42295177-42295262)
chr7 (119-215)||(10905151-10905246)
chr7 (139-210)||(40726478-40726549)
chr7 (75-211)||(9281066-9281201)
chr7 (75-211)||(9292037-9292172)
chr7 (81-169)||(33202405-33202493)
chr7 (99-219)||(34067820-34067939)
chr7 (227-288)||(43856811-43856872)
chr7 (81-204)||(25186876-25186999)
chr7 (81-210)||(34772819-34772946)
chr7 (99-167)||(1249667-1249735)
chr7 (11-212)||(38839360-38839564)
chr7 (225-288)||(30216165-30216228)
chr7 (227-293)||(27521403-27521469)
chr7 (134-206)||(43383211-43383283)
chr7 (168-216)||(48539213-48539261)
chr7 (227-293)||(45613951-45614017)
[»] chr3 (28 HSPs)
chr3 (52-217)||(44198798-44198963)
chr3 (76-212)||(46940705-46940841)
chr3 (13-219)||(7900887-7901094)
chr3 (81-219)||(39583169-39583307)
chr3 (6-219)||(53785738-53785952)
chr3 (6-219)||(49017992-49018206)
chr3 (113-217)||(37132971-37133075)
chr3 (69-219)||(52741439-52741590)
chr3 (95-219)||(26772787-26772911)
chr3 (85-219)||(4473090-4473224)
chr3 (52-219)||(13582539-13582705)
chr3 (69-196)||(37992384-37992511)
chr3 (98-219)||(5338672-5338796)
chr3 (148-213)||(38670887-38670952)
chr3 (81-212)||(38146092-38146223)
chr3 (142-219)||(32546824-32546901)
chr3 (99-219)||(3443270-3443390)
chr3 (99-219)||(38978757-38978877)
chr3 (140-219)||(7502010-7502090)
chr3 (125-212)||(54508367-54508455)
chr3 (148-210)||(51234654-51234716)
chr3 (125-196)||(43123197-43123268)
chr3 (227-293)||(13582442-13582508)
chr3 (227-293)||(38145988-38146054)
chr3 (153-210)||(52411903-52411960)
chr3 (217-261)||(7502109-7502153)
chr3 (226-294)||(46320025-46320093)
chr3 (227-289)||(46940882-46940944)
[»] scaffold0490 (1 HSPs)
scaffold0490 (52-219)||(6363-6529)
[»] scaffold0148 (1 HSPs)
scaffold0148 (69-219)||(33279-33428)
[»] chr2 (25 HSPs)
chr2 (6-209)||(23484802-23485006)
chr2 (12-219)||(41867778-41867986)
chr2 (8-219)||(2888545-2888753)
chr2 (69-210)||(5532457-5532598)
chr2 (99-219)||(4413024-4413144)
chr2 (52-212)||(9685326-9685486)
chr2 (6-216)||(19161647-19161858)
chr2 (81-219)||(28225029-28225167)
chr2 (69-178)||(44686490-44686598)
chr2 (6-219)||(17344667-17344881)
chr2 (122-202)||(1296031-1296111)
chr2 (140-216)||(13147096-13147175)
chr2 (69-210)||(27502400-27502540)
chr2 (134-215)||(34814812-34814893)
chr2 (143-206)||(18744956-18745019)
chr2 (81-210)||(3825764-3825894)
chr2 (149-219)||(33612555-33612625)
chr2 (164-218)||(2886638-2886692)
chr2 (134-212)||(5679314-5679392)
chr2 (227-293)||(17344570-17344636)
chr2 (227-293)||(41868017-41868083)
chr2 (169-216)||(20142753-20142800)
chr2 (227-285)||(13413291-13413349)
chr2 (69-146)||(9674946-9675023)
chr2 (144-197)||(44720374-44720427)
[»] scaffold0224 (1 HSPs)
scaffold0224 (68-218)||(18292-18441)
[»] scaffold0186 (1 HSPs)
scaffold0186 (69-219)||(10389-10543)
[»] scaffold1768 (1 HSPs)
scaffold1768 (12-216)||(54-259)
[»] scaffold0110 (1 HSPs)
scaffold0110 (69-219)||(47467-47617)
[»] scaffold0031 (1 HSPs)
scaffold0031 (117-210)||(49449-49542)
[»] scaffold0009 (1 HSPs)
scaffold0009 (81-219)||(103135-103272)
[»] scaffold0493 (1 HSPs)
scaffold0493 (150-219)||(8525-8594)
[»] scaffold0119 (1 HSPs)
scaffold0119 (107-191)||(16191-16275)
[»] scaffold0470 (1 HSPs)
scaffold0470 (123-219)||(7631-7727)
[»] scaffold0085 (1 HSPs)
scaffold0085 (134-187)||(37391-37444)


Alignment Details
Target: chr5 (Bit Score: 627; Significance: 0; HSPs: 31)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 627; E-Value: 0
Query Start/End: Original strand, 1 - 765
Target Start/End: Original strand, 3114023 - 3114790
Alignment:
Q  1 ttagtcatgcagatgttatggtgtacaaatgggtaagaggaaacactcatttgtagacttgaccagtatttcaccactcatgggattaggggttggggct 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  3114023 ttagtcatgcagatgttatggtgtacaaatgggtaagaggaaacactcatttgtagacttgaccagtatttcaccactcatgggattaggggtcggggct 3114122  T
Q  101 tttacggtagggcagacagccctaaaagttgcatcaaacaaagtggccaaacatgagaaagcatgttctgacagtcaacatgtttttataccatttgttt 200  Q
    ||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3114123 tttacggtaggacaggcagccctaaaagttgcatcaaacaaagtggccaaacatgagaaagcatgttctgacagtcaacatgtttttataccatttgttt 3114222  T
Q  201 ttgacacttttggtttccttctacaaagttcaaagggtcatgcacaacaatgtcataactccaaggtctgtgaatgttgtgtttacgaagatttgtctt- 299  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  3114223 ttgacacttttggtttccttctacagagttcaaagggtcatgcacaacaatgtcataactccaaggtctgtgaatgttgtgtttacgaagatttgtcttc 3114322  T
Q  300 ---tcatgtgtgattattcttgnnnnnnnnnnnnnnntccaaagcattttttgtaattcggtactatgcagttagacatacaaaaatagtttttctctaa 396  Q
       |||||||| ||||||||||               |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  3114323 tattcatgtgtaattattcttgatatataatatatattccaaagcattttttgtaattcagtactatgcagttagacatacaaaaatagtttttctctaa 3114422  T
Q  397 ctgacctgttgtttgagcaagctatgtccttttcctccggatcttgggcaaagaagcaccctaactgaagagtgcttgaaaaagctgcgagtttcctcat 496  Q
    |||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3114423 ctgacctgttgtttcagcaagctatgtccttttcctccagatcttgggcaaagaagcaccctaactgaagagtgcttgaaaaagctgcgagtttcctcat 3114522  T
Q  497 cataagtgttcataagtccaacctacatatcaagaaatcaataaatcattgaaatttggtaaaagaagtaagaaactggttacaacttaattgcctattc 596  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||    
T  3114523 cataagtgttcataagtccaacctacatatcaagaaatcaataaatcatagaaatttggt-aaagaagtaagaaactggttacaacttaattgcctattc 3114621  T
Q  597 aaatgtagcagcaaggcatgccaagggaatacactaatagagttagagagccaagtatcagaaacataaatagaaagnnnnnnnngaagatcattactgt 696  Q
    |||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        |||||||||||||||    
T  3114622 aaaaatagcagcaaggcatgccaagggaatacactaatagagttagagagccaagtatcagaaacataaatagaaagttttttttgaagatcattactgt 3114721  T
Q  697 tttatatccaagcatgctgttagaagtaggatcatcccacactagtagaagcactctcacaccttcttg 765  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  3114722 tttatatccaagcatgctgttagaagtaggatcatcccacacaagtagaagcactctcacaccttcttg 3114790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 125; E-Value: 6e-64
Query Start/End: Original strand, 369 - 536
Target Start/End: Original strand, 3120293 - 3120458
Alignment:
Q  369 tagacatacaaaaatagtttttctctaactgacctgttgtttgagcaagctatgtccttttcctccggatcttgggcaaagaagcaccctaactgaagag 468  Q
    |||||||||||||||||||||||   |||||||||| ||||||||| ||||||||||||||||||| ||||||||||||||||||||| |||||||||||    
T  3120293 tagacatacaaaaatagtttttca--aactgacctgctgtttgagccagctatgtccttttcctccagatcttgggcaaagaagcaccttaactgaagag 3120390  T
Q  469 tgcttgaaaaagctgcgagtttcctcatcataagtgttcataagtccaacctacatatcaagaaatca 536  Q
    ||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||| ||||||    
T  3120391 tgcttgaaaaaactgcgagtttcctcgtcataagtgttcataagtccaacctacatatcaacaaatca 3120458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 97; E-Value: 3e-47
Query Start/End: Original strand, 91 - 219
Target Start/End: Original strand, 37873588 - 37873716
Alignment:
Q  91 ggttggggcttttacggtagggcagacagccctaaaagttgcatcaaacaaagtggccaaacatgagaaagcatgttctgacagtcaacatgtttttata 190  Q
    ||||||||||||||||||||| |||||||| ||||||||||| |||| |||||||||||||||||||||||| |||||||||| ||||||||||||||||    
T  37873588 ggttggggcttttacggtaggacagacagctctaaaagttgcgtcaagcaaagtggccaaacatgagaaagcgtgttctgacaatcaacatgtttttata 37873687  T
Q  191 ccatttgtttttgacacttttggtttcct 219  Q
    ||||||| ||||||||||||||| |||||    
T  37873688 ccatttgcttttgacacttttggcttcct 37873716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 69 - 219
Target Start/End: Complemental strand, 35310627 - 35310477
Alignment:
Q  69 tttcaccactcatgggattaggggttggggcttttacggtagggcagacagccctaaaagttgcatcaaacaaagtggccaaacatgagaaagcatgttc 168  Q
    ||||||||||  |||| |||||||| ||||||||||||||||| |||||| ||||||||| ||| |||| ||||||||||||||||||||||||||||||    
T  35310627 tttcaccacttgtgggtttaggggtcggggcttttacggtaggacagacaaccctaaaagatgcgtcaagcaaagtggccaaacatgagaaagcatgttc 35310528  T
Q  169 tgacagtcaacatgtttttataccatttgtttttgacacttttggtttcct 219  Q
    ||||| |||||||| ||||||||||| || |||||||||||| || |||||    
T  35310527 tgacaatcaacatgcttttataccatctgcttttgacactttcggcttcct 35310477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 12 - 219
Target Start/End: Complemental strand, 27336930 - 27336722
Alignment:
Q  12 gatgttatggtgtacaaatgggtaagaggaaa-cactcatttgtagacttgaccagtatttcaccactcatgggattaggggttggggcttttacggtag 110  Q
    |||||||||||||||  ||||||  ||||||| ||  ||| ||| ||||||||  |  ||||||||||  |||| |||||||| |||||||||||  |||    
T  27336930 gatgttatggtgtacggatgggttggaggaaaacatgcatgtgtggacttgactggggtttcaccacttgtgggtttaggggtgggggcttttacaatag 27336831  T
Q  111 ggcagacagccctaaaagttgcatcaaacaaagtggccaaacatgagaaagcatgttctgacagtcaacatgtttttataccatttgtttttgacacttt 210  Q
    | |||||||||||||||||||| |||| |||||||| ||||||||||||| | |||||||||| |||||||  |||||||||||||| |||||||||||     
T  27336830 gacagacagccctaaaagttgcgtcaagcaaagtggtcaaacatgagaaatcgtgttctgacaatcaacatacttttataccatttgcttttgacacttg 27336731  T
Q  211 tggtttcct 219  Q
    ||| |||||    
T  27336730 tggcttcct 27336722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 73; E-Value: 6e-33
Query Start/End: Original strand, 118 - 210
Target Start/End: Original strand, 25663009 - 25663101
Alignment:
Q  118 agccctaaaagttgcatcaaacaaagtggccaaacatgagaaagcatgttctgacagtcaacatgtttttataccatttgtttttgacacttt 210  Q
    ||||||||||| ||||||||||||||||||||||||||||||||| |||||||| | ||||||||||||||||||||||| ||||||||||||    
T  25663009 agccctaaaagctgcatcaaacaaagtggccaaacatgagaaagcgtgttctgataatcaacatgtttttataccatttgcttttgacacttt 25663101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 73; E-Value: 6e-33
Query Start/End: Original strand, 8 - 219
Target Start/End: Original strand, 32269663 - 32269875
Alignment:
Q  8 tgcagatgttatggtgtacaaatgggtaagaggaaa-cactcatttgtagacttgaccagtatttcaccactcatgggattaggggttggggcttttacg 106  Q
    |||||||||||||||||||  ||||||| ||||||| ||  ||| ||||||||||||  |  ||||||||||  ||| |||||| || ||| |||||| |    
T  32269663 tgcagatgttatggtgtacggatgggtaggaggaaaacatgcatgtgtagacttgactggggtttcaccacttctggaattaggtgtcgggccttttatg 32269762  T
Q  107 gtagggcagacagccctaaaagttgcatcaaacaaagtggccaaacatgagaaagcatgttctgacagtcaacatgtttttataccatttgtttttgaca 206  Q
    ||||| ||  || ||||||||| |||||||| |||||||| ||||||||||||||  |||||||||| |||||| | |||||||||||||| |||||| |    
T  32269763 gtaggacatgcaaccctaaaagctgcatcaaccaaagtggtcaaacatgagaaagtgtgttctgacaatcaacacgcttttataccatttgcttttgata 32269862  T
Q  207 cttttggtttcct 219  Q
    |||| | ||||||    
T  32269863 ctttcgatttcct 32269875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 69 - 216
Target Start/End: Original strand, 15291954 - 15292101
Alignment:
Q  69 tttcaccactcatgggattaggggttggggcttttacggtagggcagacagccctaaaagttgcatcaaacaaagtggccaaacatgagaaagcatgttc 168  Q
    ||||||||||  | |||||| | || ||| ||||| ||||| | |||||| |||||||||| || ||||||||||||||||||||||||||| | |||||    
T  15291954 tttcaccacttgttggattaagtgtcgggccttttgcggtatgacagacaaccctaaaagtggcgtcaaacaaagtggccaaacatgagaaaacgtgttc 15292053  T
Q  169 tgacagtcaacatgtttttataccatttgtttttgacacttttggttt 216  Q
    ||||| ||||||||||||||||| |||||||||| |||||||| ||||    
T  15292054 tgacaatcaacatgtttttatacaatttgttttttacacttttagttt 15292101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 90 - 219
Target Start/End: Original strand, 13166859 - 13166988
Alignment:
Q  90 gggttggggcttttacggtagggcagacagccctaaaagttgcatcaaacaaagtggccaaacatgagaaagcatgttctgacagtcaacatgtttttat 189  Q
    ||||| ||||||||||||| || |||||| ||||||||  ||| |||| ||||||||| |||||||||||||| |||||||||| |||||||| ||||||    
T  13166859 gggttagggcttttacggtgggacagacaaccctaaaatctgcgtcaagcaaagtggctaaacatgagaaagcgtgttctgacaatcaacatgcttttat 13166958  T
Q  190 accatttgtttttgacacttttggtttcct 219  Q
    |||||||| |||||||||||| || |||||    
T  13166959 accatttgcttttgacactttcggcttcct 13166988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 69 - 210
Target Start/End: Original strand, 33691983 - 33692124
Alignment:
Q  69 tttcaccactcatgggattaggggttggggcttttacggtagggcagacagccctaaaagttgcatcaaacaaagtggccaaacatgagaaagcatgttc 168  Q
    ||||||||||  |||| |||||||| ||||||||||||||||| ||| ||| |||||||| ||| |||| |||||||||||||||||| ||| | ||||     
T  33691983 tttcaccacttgtgggtttaggggtcggggcttttacggtaggacaggcaggcctaaaagctgcgtcaagcaaagtggccaaacatgacaaaacgtgtta 33692082  T
Q  169 tgacagtcaacatgtttttataccatttgtttttgacacttt 210  Q
    ||||| |||||||| |||| ||||||||| ||||||||||||    
T  33692083 tgacaatcaacatgcttttgtaccatttgcttttgacacttt 33692124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 69 - 209
Target Start/End: Original strand, 43115386 - 43115525
Alignment:
Q  69 tttcaccactcatgggattaggggttggggcttttacggtagggcagacagccctaaaagttgcatcaaacaaagtggccaaacatgagaaagcatgttc 168  Q
    ||||||||||||||||||||| ||| |||||||||||||||||  ||||||||||||||||||| | ||| |||| || |||| |||||||||| ||||     
T  43115386 tttcaccactcatgggattagaggtcggggcttttacggtaggatagacagccctaaaagttgcgt-aaataaagcggtcaaatatgagaaagcgtgttt 43115484  T
Q  169 tgacagtcaacatgtttttataccatttgtttttgacactt 209  Q
    ||||| |||||||| ||| ||| |||||| |||||||||||    
T  43115485 tgacaatcaacatgctttcatagcatttgcttttgacactt 43115525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 686 - 765
Target Start/End: Original strand, 3120567 - 3120646
Alignment:
Q  686 atcattactgttttatatccaagcatgctgttagaagtaggatcatcccacactagtagaagcactctcacaccttcttg 765  Q
    |||||||| ||||||||||||| |||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  3120567 atcattaccgttttatatccaaacatgcttttagaagtaggatcatcccacacaagtagaagcactctcacaccttcttg 3120646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 63; E-Value: 6e-27
Query Start/End: Original strand, 69 - 219
Target Start/End: Complemental strand, 43129713 - 43129563
Alignment:
Q  69 tttcaccactcatgggattaggggttggggcttttacggtagggcagacagccctaaaagttgcatcaaacaaagtggccaaacatgagaaagcatgttc 168  Q
    ||||||||||  | ||||||||||| ||  |||||||||| || ||  ||| |||||||| ||| |||| |||||||| ||||||||||||| | |||||    
T  43129713 tttcaccacttgttggattaggggtcggaacttttacggttggacattcagtcctaaaagatgcgtcaagcaaagtggtcaaacatgagaaaacgtgttc 43129614  T
Q  169 tgacagtcaacatgtttttataccatttgtttttgacacttttggtttcct 219  Q
    ||||| ||||||||||||| ||||||||| |||||||| ||| ||||||||    
T  43129613 tgacaatcaacatgtttttctaccatttgcttttgacattttcggtttcct 43129563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 120 - 210
Target Start/End: Complemental strand, 38875766 - 38875676
Alignment:
Q  120 ccctaaaagttgcatcaaacaaagtggccaaacatgagaaagcatgttctgacagtcaacatgtttttataccatttgtttttgacacttt 210  Q
    ||||||||  |||||||||||||| | |||||||||||||||  |||||||||| ||||||||||||| ||||||||||||||||||||||    
T  38875766 ccctaaaaactgcatcaaacaaagcgaccaaacatgagaaagtgtgttctgacaatcaacatgtttttgtaccatttgtttttgacacttt 38875676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 69 - 210
Target Start/End: Complemental strand, 14423857 - 14423716
Alignment:
Q  69 tttcaccactcatgggattaggggttggggcttttacggtagggcagacagccctaaaagttgcatcaaacaaagtggccaaacatgagaaagcatgttc 168  Q
    ||||||||||  |||||||||| || ||  |||| || ||||| ||| || ||||||||  ||| |||| ||||||| || ||||||||||||| |||||    
T  14423857 tttcaccacttgtgggattaggtgtcggacctttaaccgtaggacaggcaaccctaaaaaatgcgtcaagcaaagtgaccgaacatgagaaagcgtgttc 14423758  T
Q  169 tgacagtcaacatgtttttataccatttgtttttgacacttt 210  Q
    ||||| |||||||| |||||||||||||| ||||||||||||    
T  14423757 tgacaatcaacatgcttttataccatttgcttttgacacttt 14423716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 56; E-Value: 9e-23
Query Start/End: Original strand, 13 - 219
Target Start/End: Complemental strand, 35456192 - 35455985
Alignment:
Q  13 atgttatggtgtacaaatgggtaagagg-aaacactcatttgtagacttgaccagtatttcaccactcatgggattaggggttggggcttttacggtagg 111  Q
    ||||||||||||||| ||||||| |||| ||| |  ||| ||| ||||||||| |  |||  |||||| | |||||||||||  || |||||||||||||    
T  35456192 atgttatggtgtacagatgggtaggaggtaaatatgcatgtgtggacttgaccggggttttgccactcgtaggattaggggtccggccttttacggtagg 35456093  T
Q  112 gcagacagccctaaaagttgcatcaaacaaagtggccaaacatgagaaagcatgttctgacagtcaacatgtttttataccatttgtttttgacactttt 211  Q
    | ||  ||||| ||||||||  | ||  ||| ||| ||||||||||||||| |||||| ||| |||||||| ||||||||| |||| |||||||| ||||    
T  35456092 gtaggtagcccaaaaagttgtgttaagtaaaatggtcaaacatgagaaagcgtgttctaacaatcaacatgcttttataccttttgcttttgacaatttt 35455993  T
Q  212 ggtttcct 219  Q
    || |||||    
T  35455992 ggcttcct 35455985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 122 - 202
Target Start/End: Original strand, 26212564 - 26212644
Alignment:
Q  122 ctaaaagttgcatcaaacaaagtggccaaacatgagaaagcatgttctgacagtcaacatgtttttataccatttgttttt 202  Q
    ||||||||||| |||| |||||||||||||||||||||||| | |||||||  |||||||| |||||||||||||||||||    
T  26212564 ctaaaagttgcgtcaagcaaagtggccaaacatgagaaagcgtattctgacgatcaacatgcttttataccatttgttttt 26212644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 1 - 169
Target Start/End: Complemental strand, 433540 - 433371
Alignment:
Q  1 ttagtcatgcagatgttatggtgtacaaatgggtaagaggaaacact-catttgtagacttgaccagtatttcaccactcatgggattaggggttggggc 99  Q
    |||| ||||| |||||||||||||||| ||||||  |||||||   | ||| ||| ||||||||| |  |||||||||   |||| ||| |||| |||||    
T  433540 ttaggcatgcggatgttatggtgtacagatgggttggaggaaaatatgcatgtgtggacttgaccggggtttcaccacctgtgggtttaagggtaggggc 433441  T
Q  100 ttttacggtagggcagacagccctaaaagttgcatcaaacaaagtggccaaacatgagaaagcatgttct 169  Q
    ||||||||||||  ||||| || |||||| ||  |||| |||||||||||||||||||||||| ||||||    
T  433440 ttttacggtaggatagacaaccttaaaagctgtgtcaagcaaagtggccaaacatgagaaagcgtgttct 433371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 145 - 210
Target Start/End: Complemental strand, 34335440 - 34335375
Alignment:
Q  145 ggccaaacatgagaaagcatgttctgacagtcaacatgtttttataccatttgtttttgacacttt 210  Q
    |||||||||||||||||| ||| |||||| |||||||| |||||||||||||||||||||||||||    
T  34335440 ggccaaacatgagaaagcgtgtcctgacaatcaacatgcttttataccatttgtttttgacacttt 34335375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 123 - 216
Target Start/End: Original strand, 32230489 - 32230582
Alignment:
Q  123 taaaagttgcatcaaacaaagtggccaaacatgagaaagcatgttctgacagtcaacatgtttttataccatttgtttttgacacttttggttt 216  Q
    |||||||||| |||| ||||||| ||||||||||||||   |||||||||| |||||| | ||||||||||| ||  || ||||||||||||||    
T  32230489 taaaagttgcgtcaagcaaagtgaccaaacatgagaaaatgtgttctgacaatcaacaagcttttataccatctgcgttcgacacttttggttt 32230582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 143 - 219
Target Start/End: Complemental strand, 42921802 - 42921726
Alignment:
Q  143 gtggccaaacatgagaaagcatgttctgacagtcaacatgtttttataccatttgtttttgacacttttggtttcct 219  Q
    |||| |||||| |||||| | |||||||||| |||||||| |||||||||||||| || ||||||||| ||||||||    
T  42921802 gtggtcaaacacgagaaaacgtgttctgacaatcaacatgcttttataccatttgcttatgacactttcggtttcct 42921726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 162 - 212
Target Start/End: Complemental strand, 430688 - 430638
Alignment:
Q  162 catgttctgacagtcaacatgtttttataccatttgtttttgacacttttg 212  Q
    |||||||||||| |||||||| |||||||||||||| ||||||||||||||    
T  430688 catgttctgacaatcaacatgcttttataccatttgcttttgacacttttg 430638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 227 - 285
Target Start/End: Original strand, 37873747 - 37873805
Alignment:
Q  227 agttcaaagggtcatgcacaacaatgtcataactccaaggtctgtgaatgttgtgttta 285  Q
    |||||||||||||||||| ||||||||||| ||| | |||||| |||||||||||||||    
T  37873747 agttcaaagggtcatgcagaacaatgtcatgacttctaggtctatgaatgttgtgttta 37873805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 134 - 195
Target Start/End: Complemental strand, 8859030 - 8858969
Alignment:
Q  134 tcaaacaaagtggccaaacatgagaaagcatgttctgacagtcaacatgtttttataccatt 195  Q
    |||| |||||| | ||||||||||||||| |||||||||| |||||||||||||||| ||||    
T  8859030 tcaagcaaagtagtcaaacatgagaaagcgtgttctgacaatcaacatgtttttatatcatt 8858969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 120 - 210
Target Start/End: Complemental strand, 8100680 - 8100590
Alignment:
Q  120 ccctaaaagttgcatcaaacaaagtggccaaacatgagaaagcatgttctgacagtcaacatgtttttataccatttgtttttgacacttt 210  Q
    ||||||| | ||||||||  ||| ||| ||||||||||||| | |||| ||||| |  ||||| ||||||||||||||||| |||||||||    
T  8100680 ccctaaacgctgcatcaagtaaaatggtcaaacatgagaaaacgtgttgtgacaatttacatgcttttataccatttgtttgtgacacttt 8100590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 140 - 212
Target Start/End: Complemental strand, 14436605 - 14436536
Alignment:
Q  140 aaagtggccaaacatgagaaagcatgttctgacagtcaacatgtttttataccatttgtttttgacacttttg 212  Q
    ||||||||||||||||| ||| | |||||| |   |||||||||||||||| |||||||||||||||| ||||    
T  14436605 aaagtggccaaacatgaaaaaacgtgttctaa---tcaacatgtttttatatcatttgtttttgacacctttg 14436536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 166 - 216
Target Start/End: Original strand, 14723269 - 14723319
Alignment:
Q  166 ttctgacagtcaacatgtttttataccatttgtttttgacacttttggttt 216  Q
    |||||||| |||||||| ||||||| ||||||||||| |||||||||||||    
T  14723269 ttctgacaatcaacatgcttttatatcatttgttttttacacttttggttt 14723319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 229 - 293
Target Start/End: Complemental strand, 23023591 - 23023527
Alignment:
Q  229 ttcaaagggtcatgcacaacaatgtcataactccaaggtctgtgaatgttgtgtttacgaagatt 293  Q
    |||||| ||||||||| | |||||||||  |||| |||||  |||||||||||||||||||||||    
T  23023591 ttcaaaaggtcatgcatatcaatgtcatgtctcctaggtcgatgaatgttgtgtttacgaagatt 23023527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 226 - 293
Target Start/End: Original strand, 32269905 - 32269972
Alignment:
Q  226 aagttcaaagggtcatgcacaacaatgtcataactccaaggtctgtgaatgttgtgtttacgaagatt 293  Q
    ||||||||| ||||||||| | |||||||||  |||| |||||  |||||||||||||||||| ||||    
T  32269905 aagttcaaaaggtcatgcatagcaatgtcatgtctcctaggtccatgaatgttgtgtttacgaggatt 32269972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 118 - 212
Target Start/End: Original strand, 9829331 - 9829423
Alignment:
Q  118 agccctaaaagttgcatcaaacaaagtggccaaacatgagaaagcatgttctgacagtcaacatgtttttataccatttgtttttgacacttttg 212  Q
    ||||||||||||||| | || ||||||||| || ||||| |||   |||| ||||| |||||||| ||||||||||||| | |||||||||||||    
T  9829331 agccctaaaagttgcgt-aagcaaagtggctaa-catgataaaatgtgttttgacaatcaacatgcttttataccatttatatttgacacttttg 9829423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 148 - 213
Target Start/End: Original strand, 26577407 - 26577472
Alignment:
Q  148 caaacatgagaaagcatgttctgacagtcaacatgtttttataccatttgtttttgacacttttgg 213  Q
    ||||||| ||||||  ||||| |||  ||||||||||||||||| |||||| ||| ||||||||||    
T  26577407 caaacataagaaagtgtgttccgactatcaacatgtttttatacaatttgtgtttcacacttttgg 26577472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 97; Significance: 3e-47; HSPs: 33)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 97; E-Value: 3e-47
Query Start/End: Original strand, 8 - 219
Target Start/End: Complemental strand, 31847328 - 31847116
Alignment:
Q  8 tgcagatgttatggtgtacaaatgggtaagaggaaa-cactcatttgtagacttgaccagtatttcaccactcatgggattaggggttggggcttttacg 106  Q
    ||||||| |||||||||||| |||| |  ||||||| ||  ||| ||| |||||||| ||  ||||||||||  |||| |||||||| |||||||||||     
T  31847328 tgcagatattatggtgtacagatggattggaggaaaacatgcatgtgtggacttgactagggtttcaccacttgtgggtttaggggtgggggcttttaca 31847229  T
Q  107 gtagggcagacagccctaaaagttgcatcaaacaaagtggccaaacatgagaaagcatgttctgacagtcaacatgtttttataccatttgtttttgaca 206  Q
    ||||| ||| |||||||||||| ||| |||| |||||||| ||||||||||||| |||||||||||||||||||||||||| ||||||||| ||||||||    
T  31847228 gtaggacaggcagccctaaaagctgcgtcaagcaaagtggtcaaacatgagaaaccatgttctgacagtcaacatgtttttttaccatttgcttttgaca 31847129  T
Q  207 cttttggtttcct 219  Q
    ||||||| |||||    
T  31847128 cttttggcttcct 31847116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 80; E-Value: 4e-37
Query Start/End: Original strand, 69 - 212
Target Start/End: Complemental strand, 53619765 - 53619622
Alignment:
Q  69 tttcaccactcatgggattaggggttggggcttttacggtagggcagacagccctaaaagttgcatcaaacaaagtggccaaacatgagaaagcatgttc 168  Q
    ||||||||||  |||| |||| ||| ||||||||||| ||||| ||| || ||||||||| ||| |||| |||||||||||||||||||||| | |||||    
T  53619765 tttcaccacttgtgggtttagaggtgggggcttttacagtaggacaggcaaccctaaaagctgcgtcaagcaaagtggccaaacatgagaaaacgtgttc 53619666  T
Q  169 tgacagtcaacatgtttttataccatttgtttttgacacttttg 212  Q
    ||||| |||||||| |||||||||||||||||||||||||||||    
T  53619665 tgacaatcaacatgcttttataccatttgtttttgacacttttg 53619622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 96 - 210
Target Start/End: Original strand, 55933417 - 55933531
Alignment:
Q  96 gggcttttacggtagggcagacagccctaaaagttgcatcaaacaaagtggccaaacatgagaaagcatgttctgacagtcaacatgtttttataccatt 195  Q
    |||||||||||||||| ||| |||||||||||||||| ||||||||||||||||||||||||||||  |||||| ||| |||||||| ||||||||||||    
T  55933417 gggcttttacggtaggacagtcagccctaaaagttgcgtcaaacaaagtggccaaacatgagaaagtttgttctaacaatcaacatgcttttataccatt 55933516  T
Q  196 tgtttttgacacttt 210  Q
    || ||||||||||||    
T  55933517 tgcttttgacacttt 55933531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 12 - 213
Target Start/End: Original strand, 50000795 - 50000998
Alignment:
Q  12 gatgttatggtgtacaaatgggtaagaggaaa-cactcatttgtagacttgaccagtatttcaccactcatgggattaggggttggggcttttacggtag 110  Q
    |||||||||||||||  ||||||  ||||||| ||  ||| ||| ||||||||  |  ||||||||||  |||| | |||||| ||||||||||||||||    
T  50000795 gatgttatggtgtacggatgggttggaggaaaacatgcatgtgtggacttgactggggtttcaccacttgtgggttaaggggtgggggcttttacggtag 50000894  T
Q  111 ggcagacagccctaaaagttgcatcaaacaaagtggccaaacatgagaaagcatgttctgacagtcaacatg-tttttataccatttgtttttgacactt 209  Q
    | |||||||| ||||||| ||| |||| |||||||| ||||||||||||||| |||||||||| |||||||| |||| |||| ||||| |||||||||||    
T  50000895 gacagacagctctaaaagctgcgtcaagcaaagtggtcaaacatgagaaagcgtgttctgacaatcaacatgcttttaatacaatttgcttttgacactt 50000994  T
Q  210 ttgg 213  Q
    ||||    
T  50000995 ttgg 50000998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 73; E-Value: 6e-33
Query Start/End: Original strand, 83 - 219
Target Start/End: Original strand, 56462049 - 56462184
Alignment:
Q  83 ggattaggggttggggcttttacggtagggcagacagccctaaaagttgcatcaaacaaagtggccaaacatgagaaagcatgttctgacagtcaacatg 182  Q
    ||||||||||| | | |||||||||| |   ||||  ||||||||||||| |||||||||||||| |||||||| ||||| |||||||||| ||||||||    
T  56462049 ggattaggggtcgagacttttacggttgtatagaccaccctaaaagttgcgtcaaacaaagtggc-aaacatgataaagcgtgttctgacaatcaacatg 56462147  T
Q  183 tttttataccatttgtttttgacacttttggtttcct 219  Q
    ||||||||||||||||||| |||||||||||||||||    
T  56462148 tttttataccatttgttttagacacttttggtttcct 56462184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 69 - 219
Target Start/End: Complemental strand, 132566 - 132414
Alignment:
Q  69 tttcaccactcatgggattaggggttggggcttttacggt--agggcagacagccctaaaagttgcatcaaacaaagtggccaaacatgagaaagcatgt 166  Q
    ||||||||||  | ||||||||||| ||| ||||||||||  ||| ||| |||||||||||| ||| |||| |||| |||| |||||||||||| | |||    
T  132566 tttcaccacttgttggattaggggtcgggacttttacggtgtaggacaggcagccctaaaagctgcgtcaagcaaaatggcaaaacatgagaaatcgtgt 132467  T
Q  167 tctgacagtcaacatgtttttataccatttgtttttgacacttttggtttcct 219  Q
    ||||||| |||||||| ||||||||||||||||||| ||||||| ||||||||    
T  132466 tctgacaatcaacatgcttttataccatttgttttttacactttcggtttcct 132414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 124 - 205
Target Start/End: Complemental strand, 23255828 - 23255747
Alignment:
Q  124 aaaagttgcatcaaacaaagtggccaaacatgagaaagcatgttctgacagtcaacatgtttttataccatttgtttttgac 205  Q
    ||||||||| |||| |||||||||||||||||||||||| |||||||||| | |||||| ||||||||||||||||||||||    
T  23255828 aaaagttgcgtcaagcaaagtggccaaacatgagaaagcgtgttctgacaattaacatgcttttataccatttgtttttgac 23255747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 97 - 210
Target Start/End: Original strand, 48656866 - 48656979
Alignment:
Q  97 ggcttttacggtagggcagacagccctaaaagttgcatcaaacaaagtggccaaacatgagaaagcatgttctgacagtcaacatgtttttataccattt 196  Q
    ||||||||| ||| | |||||||||||||||||| ||||||  ||| ||| ||||||||||||||  |||| || || |||| |||||||||||||||||    
T  48656866 ggcttttacagtatgacagacagccctaaaagtttcatcaagtaaaatggacaaacatgagaaagtgtgttatgtcaatcaaaatgtttttataccattt 48656965  T
Q  197 gtttttgacacttt 210  Q
    ||||||||||||||    
T  48656966 gtttttgacacttt 48656979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 99 - 219
Target Start/End: Original strand, 30940697 - 30940816
Alignment:
Q  99 cttttacggtagggcagacagccctaaaagttgcatcaaacaaagtggccaaacatgagaaagcatgttctgacagtcaacatgtttttataccatttgt 198  Q
    |||||||  |||| |||||| ||||||||||||| ||||  ||||||| ||||||||||||||| |||||||||| |||||||| |||||||||| |||     
T  30940697 cttttaccataggacagacaaccctaaaagttgcgtcaagtaaagtggtcaaacatgagaaagcgtgttctgacaatcaacatgcttttatacca-ttgc 30940795  T
Q  199 ttttgacacttttggtttcct 219  Q
    |||||||||||| | ||||||    
T  30940796 ttttgacactttcgatttcct 30940816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 56; E-Value: 9e-23
Query Start/End: Original strand, 95 - 210
Target Start/End: Original strand, 12918326 - 12918441
Alignment:
Q  95 ggggcttttacggtagggcagacagccctaaaagttgcatcaaacaaagtggccaaacatgagaaagcatgttctgacagtcaacatgtttttataccat 194  Q
    ||||||||||||||||| || ||| ||||||||||||| ||||||||||||| ||||||| ||||| | |||||||||| ||||||   |||||||| ||    
T  12918326 ggggcttttacggtaggacaaacaaccctaaaagttgcgtcaaacaaagtggtcaaacataagaaatcgtgttctgacaatcaacacacttttatactat 12918425  T
Q  195 ttgtttttgacacttt 210  Q
    ||  ||||||||||||    
T  12918426 ttacttttgacacttt 12918441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 69 - 219
Target Start/End: Complemental strand, 25504472 - 25504324
Alignment:
Q  69 tttcaccactcatgggattaggggttggggcttttacggtagggcagacagccctaaaagttgcatcaaacaaagtggccaaacatgagaaagcatgttc 168  Q
    ||||||||||  |||||||||| ||  || ||||||||||| | ||| || ||||||| |||||||||| |||| ||| ||||||||||||| | |||||    
T  25504472 tttcaccacttgtgggattaggcgtcaggccttttacggtatgacaggcaaccctaaa-gttgcatcaagcaaa-tggtcaaacatgagaaaacgtgttc 25504375  T
Q  169 tgacagtcaacatgtttttataccatttgtttttgacacttttggtttcct 219  Q
    | ||| || ||||||||||||||| |||| |||||||| ||||||||||||    
T  25504374 taacaatcgacatgtttttataccgtttgcttttgacatttttggtttcct 25504324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 81 - 219
Target Start/End: Complemental strand, 26521655 - 26521517
Alignment:
Q  81 tgggattaggggttggggcttttacggtagggcagacagccctaaaagttgcatcaaacaaagtggccaaacatgagaaagcatgttctgacagtcaaca 180  Q
    |||||||||||||  |  |||||| |||||| || ||| ||||||||||||| |||||||||||||| |||||||| ||| | |||| ||||| ||||||    
T  26521655 tgggattaggggtcagaccttttatggtaggacaaacaaccctaaaagttgcgtcaaacaaagtggctaaacatgaaaaaacgtgttatgacaatcaaca 26521556  T
Q  181 tgtttttataccatttgtttttgacacttttggtttcct 219  Q
    || ||||||| ||| || |||  ||||||||||||||||    
T  26521555 tgcttttatatcatatgctttcaacacttttggtttcct 26521517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 103 - 220
Target Start/End: Original strand, 50462908 - 50463025
Alignment:
Q  103 tacggtagggcagacagccctaaaagttgcatcaaacaaagtggccaaacatgagaaagcatgttctgacagtcaacatgtttttataccatttgttttt 202  Q
    ||||||||| ||||||||| |||||||||| |||| |||  || |||||||||||||||  | ||| |||| |||||||| ||| |||||||||| ||||    
T  50462908 tacggtaggacagacagccttaaaagttgcgtcaagcaagatgaccaaacatgagaaagtgtcttccgacaatcaacatgctttcataccatttgctttt 50463007  T
Q  203 gacacttttggtttcctt 220  Q
    |||||||||| |||||||    
T  50463008 gacacttttgatttcctt 50463025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 100 - 219
Target Start/End: Original strand, 600651 - 600770
Alignment:
Q  100 ttttacggtagggcagacagccctaaaagttgcatcaaacaaagtggccaaacatgagaaagcatgttctgacagtcaacatgtttttataccatttgtt 199  Q
    |||||| ||||| |||||| |||||||||||   |||| ||||||| |||||||||||||| | |||||| ||| | |||||| |||||||||||||| |    
T  600651 ttttactgtaggacagacaaccctaaaagttatgtcaagcaaagtgaccaaacatgagaaaacgtgttctaacaattaacatgcttttataccatttgct 600750  T
Q  200 tttgacacttttggtttcct 219  Q
    |||| |||||| ||||||||    
T  600751 tttgtcactttcggtttcct 600770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 121 - 219
Target Start/End: Original strand, 34107674 - 34107774
Alignment:
Q  121 cctaaaagttgcatcaaacaaagtggccaaacatgagaaagcatgt--tctgacagtcaacatgtttttataccatttgtttttgacacttttggtttcc 218  Q
    ||||||| |||| |||||| |||||||||||||||||||| | |||  || || | |||||||||||||||||||||||||||||||||||| | |||||    
T  34107674 cctaaaaattgcgtcaaacgaagtggccaaacatgagaaaacgtgtgttcagataatcaacatgtttttataccatttgtttttgacactttcgatttcc 34107773  T
Q  219 t 219  Q
    |    
T  34107774 t 34107774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 52 - 182
Target Start/End: Complemental strand, 53170703 - 53170573
Alignment:
Q  52 tgtagacttgaccagtatttcaccactcatgggattaggggttggggcttttacggtagggcagacagccctaaaagttgcatcaaacaaagtggccaaa 151  Q
    ||||||||||||  |  ||||||||||| |||||||||| || ||  ||||||| ||| | ||| ||||||||||||| |  | |   ||||| ||||||    
T  53170703 tgtagacttgactggggtttcaccactcgtgggattaggtgtcggaccttttacagtatgacaggcagccctaaaagtcgtgttaggtaaagtagccaaa 53170604  T
Q  152 catgagaaagcatgttctgacagtcaacatg 182  Q
    ||||||||||| |||||||||||||||||||    
T  53170603 catgagaaagcgtgttctgacagtcaacatg 53170573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 225 - 293
Target Start/End: Complemental strand, 45661691 - 45661623
Alignment:
Q  225 aaagttcaaagggtcatgcacaacaatgtcataactccaaggtctgtgaatgttgtgtttacgaagatt 293  Q
    ||||||||||||||||| |||||||||||||||||||  |||||  ||||| |||||||||||| ||||    
T  45661691 aaagttcaaagggtcatacacaacaatgtcataactcgtaggtccatgaatattgtgtttacgaggatt 45661623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 99 - 210
Target Start/End: Complemental strand, 12053562 - 12053451
Alignment:
Q  99 cttttacggtagggcagacagccctaaaagttgcatcaaacaaagtggccaaacatgagaaagcatgttctgacagtcaacatgtttttataccatttgt 198  Q
    ||||||| ||||| || ||||| ||||||| ||| ||||||||||| | ||||||||||||| | |||||| ||| |||| | ||||||||| ||||||     
T  12053562 cttttacagtaggacaaacagctctaaaagctgcgtcaaacaaagttgtcaaacatgagaaatcgtgttctaacaatcaaaacgtttttatatcatttgc 12053463  T
Q  199 ttttgacacttt 210  Q
    ||| ||| ||||    
T  12053462 tttcgactcttt 12053451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 83 - 210
Target Start/End: Complemental strand, 16957707 - 16957580
Alignment:
Q  83 ggattaggggttggggcttttacggtagggcagacagccctaaaagttgcatcaaacaaagtggccaaacatgagaaagcatgttctgacagtcaacatg 182  Q
    ||||||||||| ||| || |||| |||||  || ||| |||||||||||| |  | |||| || |||||||||||||||  || ||||| | ||||||||    
T  16957707 ggattaggggtcgggcctcttacagtaggataggcagtcctaaaagttgcgtagagcaaaatgaccaaacatgagaaagtgtgctctgataatcaacatg 16957608  T
Q  183 tttttataccatttgtttttgacacttt 210  Q
     || ||||||||||| ||||||||||||    
T  16957607 cttatataccatttgcttttgacacttt 16957580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 143 - 219
Target Start/End: Original strand, 43849350 - 43849426
Alignment:
Q  143 gtggccaaacatgagaaagcatgttctgacagtcaacatgtttttataccatttgtttttgacacttttggtttcct 219  Q
    ||||||||||| |||||||| ||||| || |  ||||||| |||||||| |||||| |||||||||||||| |||||    
T  43849350 gtggccaaacacgagaaagcgtgttcagataaccaacatgcttttatactatttgtgtttgacacttttggcttcct 43849426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 165 - 212
Target Start/End: Complemental strand, 24720017 - 24719970
Alignment:
Q  165 gttctgacagtcaacatgtttttataccatttgtttttgacacttttg 212  Q
    ||||||||| |||||||||||||||| ||||||| |||||||||||||    
T  24720017 gttctgacaatcaacatgtttttatatcatttgtgtttgacacttttg 24719970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 156 - 219
Target Start/End: Original strand, 50483211 - 50483274
Alignment:
Q  156 agaaagcatgttctgacagtcaacatgtttttataccatttgtttttgacacttttggtttcct 219  Q
    ||||||| | |||||||| |||||||| |||||||||||||| ||| |||||||| ||||||||    
T  50483211 agaaagcgtcttctgacaatcaacatgattttataccatttgctttcgacactttcggtttcct 50483274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 55 - 165
Target Start/End: Original strand, 38535500 - 38535610
Alignment:
Q  55 agacttgaccagtatttcaccactcatgggattaggggttggggcttttacggtagggcagacagccctaaaagttgcatcaaacaaagtggccaaacat 154  Q
    ||||||||| ||  |||||| |||  ||||||| | ||||||||||||||  ||||  |||||||| ||||||||||  || |||||||||| |||| ||    
T  38535500 agacttgactagggtttcactacttgtgggatttgaggttggggcttttaatgtagaacagacagctctaaaagttgtgtctaacaaagtggtcaaatat 38535599  T
Q  155 gagaaagcatg 165  Q
     ||||||||||    
T  38535600 aagaaagcatg 38535610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 121 - 219
Target Start/End: Original strand, 46440869 - 46440967
Alignment:
Q  121 cctaaaagttgcatcaaacaaagtggccaaacatgagaaagcatgttctgacagtcaacatgtttttataccatttgtttttgacacttttggtttcct 219  Q
    |||||||||  | ||||||||||||| ||||||| | ||||  |||||| ||| | |||| ||||||||| |||||| |||||||||||| || |||||    
T  46440869 cctaaaagtaacgtcaaacaaagtggtcaaacataaaaaagtgtgttctaacaattaacacgtttttatatcatttgcttttgacactttcggcttcct 46440967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 134 - 210
Target Start/End: Complemental strand, 28740020 - 28739943
Alignment:
Q  134 tcaaacaaagtggccaaacatgagaaagcatgttctgacagtcaacatgt-ttttataccatttgtttttgacacttt 210  Q
    ||||| |||||||||||||| ||||||   |||| ||||||| ||||||| ||||||||||||| | |||||||||||    
T  28740020 tcaaataaagtggccaaacacgagaaattgtgttgtgacagttaacatgtgttttataccatttatgtttgacacttt 28739943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 167 - 219
Target Start/End: Complemental strand, 3330077 - 3330025
Alignment:
Q  167 tctgacagtcaacatgtttttataccatttgtttttgacacttttggtttcct 219  Q
    ||||||| |||||||| |||||||| ||||| ||||||||||||||| |||||    
T  3330077 tctgacaatcaacatgcttttatactatttgcttttgacacttttggcttcct 3330025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 227 - 283
Target Start/End: Original strand, 30940841 - 30940897
Alignment:
Q  227 agttcaaagggtcatgcacaacaatgtcataactccaaggtctgtgaatgttgtgtt 283  Q
    |||||||| ||||||||| ||||||||||||  ||| |||||| |||||||||||||    
T  30940841 agttcaaaaggtcatgcataacaatgtcatatatcctaggtctatgaatgttgtgtt 30940897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 164 - 219
Target Start/End: Original strand, 7536594 - 7536649
Alignment:
Q  164 tgttctgacagtcaacatgtttttataccatttgtttttgacacttttggtttcct 219  Q
    |||| ||||| ||||||||||||||||| |||||||||||||| |||  |||||||    
T  7536594 tgttttgacaatcaacatgtttttatacaatttgtttttgacaatttcagtttcct 7536649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 227 - 293
Target Start/End: Complemental strand, 4419261 - 4419195
Alignment:
Q  227 agttcaaagggtcatgcacaacaatgtcataactccaaggtctgtgaatgttgtgtttacgaagatt 293  Q
    |||||||||||| ||||| |||||||| ||  |||| |||||  |||||||||||||||||| ||||    
T  4419261 agttcaaagggttatgcataacaatgttatgtctcctaggtccatgaatgttgtgtttacgatgatt 4419195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 149 - 195
Target Start/End: Original strand, 46391323 - 46391369
Alignment:
Q  149 aaacatgagaaagcatgttctgacagtcaacatgtttttataccatt 195  Q
    ||||| |||||| |||||||| |||| ||||||||||||||||||||    
T  46391323 aaacacgagaaaacatgttctcacagccaacatgtttttataccatt 46391369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 134 - 196
Target Start/End: Complemental strand, 52022228 - 52022166
Alignment:
Q  134 tcaaacaaagtggccaaacatgagaaagcatgttctgacagtcaacatgtttttataccattt 196  Q
    |||| ||||||| ||||| |||||| |   ||||||||||||| |||||||||||||||||||    
T  52022228 tcaatcaaagtgaccaaaaatgagagaaagtgttctgacagtcgacatgtttttataccattt 52022166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 149 - 210
Target Start/End: Original strand, 6865828 - 6865889
Alignment:
Q  149 aaacatgagaaagcatgttctgacagtcaacatgtttttataccatttgtttttgacacttt 210  Q
    ||||| |||||| | |||||||||  |||||||| ||||||| |||||| ||||||||||||    
T  6865828 aaacacgagaaaacgtgttctgactatcaacatgcttttatatcatttgcttttgacacttt 6865889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 140 - 213
Target Start/End: Original strand, 45386060 - 45386133
Alignment:
Q  140 aaagtggccaaacatgagaaagcatgttctgacagtcaacatgtttttataccatttgtttttgacacttttgg 213  Q
    ||||||| ||||||| ||||||| |||||||||| ||||  | ||||||||||||||   ||||| ||||||||    
T  45386060 aaagtggtcaaacataagaaagcgtgttctgacaatcaatttctttttataccatttacatttgaaacttttgg 45386133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 87; Significance: 3e-41; HSPs: 25)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 87; E-Value: 3e-41
Query Start/End: Original strand, 69 - 219
Target Start/End: Original strand, 33220639 - 33220789
Alignment:
Q  69 tttcaccactcatgggattaggggttggggcttttacggtagggcagacagccctaaaagttgcatcaaacaaagtggccaaacatgagaaagcatgttc 168  Q
    ||||||||||  |||| |||||||| ||||||||||||||||| |||||||| ||||||| |||||||| |||||||||||||||||||||||| |||      
T  33220639 tttcaccacttgtgggtttaggggtcggggcttttacggtaggacagacagctctaaaagctgcatcaagcaaagtggccaaacatgagaaagcgtgtgt 33220738  T
Q  169 tgacagtcaacatgtttttataccatttgtttttgacacttttggtttcct 219  Q
    ||||| |||||||| |||||||||||||| |||||||||||| || |||||    
T  33220739 tgacaatcaacatgcttttataccatttgcttttgacactttcggcttcct 33220789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 82; E-Value: 3e-38
Query Start/End: Original strand, 98 - 219
Target Start/End: Original strand, 17249262 - 17249383
Alignment:
Q  98 gcttttacggtagggcagacagccctaaaagttgcatcaaacaaagtggccaaacatgagaaagcatgttctgacagtcaacatgtttttataccatttg 197  Q
    |||||||||||||| || ||| ||||||||||||| ||||||||||||||||||||||||||||  |||||||||| |||||||| ||||||||||||||    
T  17249262 gcttttacggtaggacaaacaaccctaaaagttgcgtcaaacaaagtggccaaacatgagaaagtgtgttctgacaatcaacatgcttttataccatttg 17249361  T
Q  198 tttttgacacttttggtttcct 219  Q
     ||||||||||||||| |||||    
T  17249362 cttttgacacttttggcttcct 17249383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 69 - 219
Target Start/End: Complemental strand, 959759 - 959609
Alignment:
Q  69 tttcaccactcatgggattaggggttggggcttttacggtagggcagacagccctaaaagttgcatcaaacaaagtggccaaacatgagaaagcatgttc 168  Q
    |||||||||| ||||||||||| || ||| ||||||||||||| || ||| ||||||||||||  |||| ||||||||| || ||||||||| | |||||    
T  959759 tttcaccacttatgggattaggtgtcgggccttttacggtaggacaaacaaccctaaaagttgtgtcaagcaaagtggctaaccatgagaaaacgtgttc 959660  T
Q  169 tgacagtcaacatgtttttataccatttgtttttgacacttttggtttcct 219  Q
    ||||| ||||||||| |||||||||||||||||||||| ||| ||||||||    
T  959659 tgacaatcaacatgtctttataccatttgtttttgacattttcggtttcct 959609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 69 - 212
Target Start/End: Original strand, 357645 - 357788
Alignment:
Q  69 tttcaccactcatgggattaggggttggggcttttacggtagggcagacagccctaaaagttgcatcaaacaaagtggccaaacatgagaaagcatgttc 168  Q
    ||||||||||  |||| |||||||| || |||||||||||||| ||| |||||||||||| | | |||| |||||||||||||||||||||||| |||||    
T  357645 tttcaccacttgtgggtttaggggtcggtgcttttacggtaggacaggcagccctaaaagcttcgtcaagcaaagtggccaaacatgagaaagcgtgttc 357744  T
Q  169 tgacagtcaacatgtttttataccatttgtttttgacacttttg 212  Q
    ||||| | |||||| ||||||| | ||||||||| |||||||||    
T  357745 tgacaatgaacatgcttttataacctttgtttttaacacttttg 357788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 69 - 217
Target Start/End: Original strand, 45605 - 45753
Alignment:
Q  69 tttcaccactcatgggattaggggttggggcttttacggtagggcagacagccctaaaagttgcatcaaacaaagtggccaaacatgagaaagcatgttc 168  Q
    ||||||||||  |||||||||| || ||  ||||||| ||||| ||| |||| ||||||| |||||||| |||||||  ||||||||||||| | |||||    
T  45605 tttcaccacttgtgggattaggtgtcggaccttttaccgtaggacaggcagctctaaaagctgcatcaagcaaagtgatcaaacatgagaaaacgtgttc 45704  T
Q  169 tgacagtcaacatgtttttataccatttgtttttgacacttttggtttc 217  Q
    ||||| |||||||| |||||| |||||||||||||||||||| ||||||    
T  45705 tgacaatcaacatgcttttattccatttgtttttgacactttcggtttc 45753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 12 - 219
Target Start/End: Original strand, 4206466 - 4206674
Alignment:
Q  12 gatgttatggtgtacaaatgggtaagaggaaa-cactcatttgtagacttgaccagtatttcaccactcatgggattaggggttggggcttttacggtag 110  Q
    |||||||||||||||||||||||  ||||||| ||  ||| ||||||||||||  |  ||||||||||  ||||||||||  |  |  ||||||||||||    
T  4206466 gatgttatggtgtacaaatgggttggaggaaaacatgcatgtgtagacttgactggggtttcaccacttgtgggattaggcatcagaccttttacggtag 4206565  T
Q  111 ggcagacagccctaaaagttgcatcaaacaaagtggccaaacatgagaaagcatgttctgacagtcaacatgtttttataccatttgtttttgacacttt 210  Q
    | ||  ||||| ||||||| || |||| ||||||||| |||||||||||||| |||||||||| | |||||| ||||||| |||||| ||||||||||||    
T  4206566 gacatgcagccttaaaagtggcgtcaagcaaagtggctaaacatgagaaagcgtgttctgacaatgaacatgcttttatatcatttgcttttgacacttt 4206665  T
Q  211 tggtttcct 219  Q
     || |||||    
T  4206666 cgggttcct 4206674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 69 - 219
Target Start/End: Complemental strand, 34304675 - 34304525
Alignment:
Q  69 tttcaccactcatgggattaggggttggggcttttacggtagggcagacagccctaaaagttgcatcaaacaaagtggccaaacatgagaaagcatgttc 168  Q
    ||||||||||  |||| ||||| || |||||||||||||| || |||  ||||||||||| ||| |||| |||| |  |||||||||||||||| |||||    
T  34304675 tttcaccacttgtgggtttaggagtcggggcttttacggttggacagctagccctaaaagctgcgtcaagcaaaataaccaaacatgagaaagcgtgttc 34304576  T
Q  169 tgacagtcaacatgtttttataccatttgtttttgacacttttggtttcct 219  Q
    ||||| |||||||| |||||||||||||| |||||||||||| || |||||    
T  34304575 tgacaatcaacatgcttttataccatttgcttttgacactttgggcttcct 34304525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 69 - 213
Target Start/End: Original strand, 28008915 - 28009062
Alignment:
Q  69 tttcaccactcatgggattaggggttggggcttttacggtagggcagacagccctaaaagttgcatcaaacaaagtggccaaacatgagaaagcatgttc 168  Q
    ||||||||||| ||||||||||||| ||||||||||||||||| ||  || ||||||||| | | |||| ||||| || ||||||||||||||| |||||    
T  28008915 tttcaccactcgtgggattaggggtcggggcttttacggtaggacatgcaaccctaaaagctacgtcaagcaaagcggtcaaacatgagaaagcttgttc 28009014  T
Q  169 tgacagtc---aacatgtttttataccatttgtttttgacacttttgg 213  Q
    | ||| ||   || ||| |||||||||||||| |||||||||||||||    
T  28009015 taacaatcaagaatatggttttataccatttgcttttgacacttttgg 28009062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 12 - 293
Target Start/End: Complemental strand, 32115926 - 32115650
Alignment:
Q  12 gatgttatggtgtacaaatgggtaagaggaaa-cactcatttgtagacttgaccagtatttcaccactcatgggattaggggttggggcttttacggtag 110  Q
    |||||||||||||||| ||| ||| ||||||| ||  ||| ||||||||||||| |  ||||| |||| ||||||||||| || |||  ||||||| |||    
T  32115926 gatgttatggtgtacagatgagtaggaggaaaacatgcatgtgtagacttgaccggggtttcatcacttatgggattaggtgtcgggcattttacgttag 32115827  T
Q  111 ggcagacagccctaaaagttgcatcaaacaaagtggccaaacatgagaaagcatgttctgacagtcaacatgtttttataccatttgtttttga-cactt 209  Q
    | ||  ||||| |||||||||| ||||||||||||||||||||||||||||  ||||        ||||||| ||||| |||||||| |||||| ||       
T  32115826 gacatgcagccttaaaagttgcgtcaaacaaagtggccaaacatgagaaag--tgtt-------gcaacatgcttttagaccatttgcttttgaccatgg 32115736  T
Q  210 ttggtttccttctacaa--agttcaaagggtcatgcacaacaatgtcataactccaaggtctgtgaatgttgtgtttacgaagatt 293  Q
     || |  ||||||||||  |||||||| ||||||||| |||||||||||  |||| |||||  |||||||||||||||||| ||||    
T  32115735 ctgttgaccttctacaaagagttcaaaaggtcatgcataacaatgtcatgtctcctaggtccatgaatgttgtgtttacgatgatt 32115650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 69 - 219
Target Start/End: Complemental strand, 34415615 - 34415465
Alignment:
Q  69 tttcaccactcatgggattaggggttggggcttttacggtagggcagacagccctaaaagttgcatcaaacaaagtggccaaacatgagaaagcatgttc 168  Q
    ||||||||| | | |||||||||||  || |||||||||||||  || || || || ||| ||| |||| |||| |||| |||||||||||||  |||||    
T  34415615 tttcaccacacgttggattaggggtcaggacttttacggtaggataggcatccttacaagctgcgtcaagcaaaatggcgaaacatgagaaagtgtgttc 34415516  T
Q  169 tgacagtcaacatgtttttataccatttgtttttgacacttttggtttcct 219  Q
    ||||| |||||||| |||||| |||||||||||||||||||| ||||||||    
T  34415515 tgacaatcaacatgcttttatgccatttgtttttgacactttaggtttcct 34415465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 8 - 195
Target Start/End: Complemental strand, 12401572 - 12401384
Alignment:
Q  8 tgcagatgttatggtgtacaaatgggtaagaggaaa-cactcatttgtagacttgaccagtatttcaccactcatgggattaggggttggggcttttacg 106  Q
    |||| ||||||||||||||  ||||||| ||||||| ||  ||| |||||||||||   |  |||||||||| ||||||||| || |  ||||||||| |    
T  12401572 tgcaaatgttatggtgtacggatgggtaggaggaaaacatgcatgtgtagacttgattggggtttcaccacttatgggattatggttcagggcttttatg 12401473  T
Q  107 gtagggcagacagccctaaaagttgcatcaaacaaagtggccaaacatgagaaagcatgttctgacagtcaacatgtttttataccatt 195  Q
    ||||| ||  |||| ||||||||||| ||||||||||||||||||||| ||| ||| |||| ||  | |||||||| || |||||||||    
T  12401472 gtaggacaagcagcactaaaagttgcgtcaaacaaagtggccaaacataagatagcgtgttttgctaatcaacatgcttatataccatt 12401384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 95 - 203
Target Start/End: Complemental strand, 34169021 - 34168913
Alignment:
Q  95 ggggcttttacggtagggcagacagccctaaaagttgcatcaaacaaagtggccaaacatgagaaagcatgttctgacagtcaacatgtttttataccat 194  Q
    ||||||||||| ||||| ||  || |||||||| |||| |||| |||||||||||||||||||||||||||||  ||||  ||||||| |||||||||||    
T  34169021 ggggcttttaccgtaggacatgcaaccctaaaatttgcgtcaagcaaagtggccaaacatgagaaagcatgtttggacaagcaacatgcttttataccat 34168922  T
Q  195 ttgtttttg 203  Q
    ||| |||||    
T  34168921 ttgcttttg 34168913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 113 - 219
Target Start/End: Complemental strand, 24016472 - 24016366
Alignment:
Q  113 cagacagccctaaaagttgcatcaaacaaagtggccaaacatgagaaagcatgttctgacagtcaacatgtttttataccatttgtttttgacacttttg 212  Q
    |||||| || |||||||||||||||  ||| | | ||||||||||||||| |||||| ||| ||||||||||||||||||||||| | |||| | |||||    
T  24016472 cagacaaccgtaaaagttgcatcaagtaaaatagtcaaacatgagaaagcttgttctcacaatcaacatgtttttataccatttgctattgatagttttg 24016373  T
Q  213 gtttcct 219  Q
    |||||||    
T  24016372 gtttcct 24016366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 81 - 207
Target Start/End: Original strand, 34554217 - 34554343
Alignment:
Q  81 tgggattaggggttggggcttttacggtagggcagacagccctaaaagttgcatcaaacaaagtggccaaacatgagaaagcatgttctgacagtcaaca 180  Q
    ||||||||||| |  |||||||||  ||||| |||||| | ||||||||||| |||| ||||  | |||||||||||||||| |||||||| | |||| |    
T  34554217 tgggattagggatcagggcttttaaagtaggtcagacaacactaaaagttgcgtcaagcaaaacgaccaaacatgagaaagcgtgttctgataatcaaga 34554316  T
Q  181 tgtttttataccatttgtttttgacac 207  Q
    ||||||||||||||||  |||||||||    
T  34554317 tgtttttataccatttacttttgacac 34554343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 139 - 219
Target Start/End: Original strand, 4165920 - 4166000
Alignment:
Q  139 caaagtggccaaacatgagaaagcatgttctgacagtcaacatgtttttataccatttgtttttgacacttttggtttcct 219  Q
    ||||||||| |||||||||||||| |||||||||| |||||||| ||||||| |||||| |||||||||||| || |||||    
T  4165920 caaagtggctaaacatgagaaagcgtgttctgacaatcaacatgcttttatatcatttgcttttgacactttcgggttcct 4166000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 69 - 210
Target Start/End: Complemental strand, 28543554 - 28543413
Alignment:
Q  69 tttcaccactcatgggattaggggttggggcttttacggtagggcagacagccctaaaagttgcatcaaacaaagtggccaaacatgagaaagcatgttc 168  Q
    ||||||||||  ||||||||| |||  || ||||||||||| | ||| ||||| ||||||| || |||| |||||||||||||||||||||| | ||||     
T  28543554 tttcaccacttgtgggattagaggtcaggacttttacggtaagacaggcagccttaaaagtcgcgtcaagcaaagtggccaaacatgagaaatcgtgttt 28543455  T
Q  169 tgacagtcaacatgtttttataccatttgtttttgacacttt 210  Q
    ||| | |||  ||| | |||||| ||||| ||||||||||||    
T  28543454 tgaaaatcactatgctcttatactatttgattttgacacttt 28543413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 84 - 209
Target Start/End: Original strand, 29338022 - 29338147
Alignment:
Q  84 gattaggggttggggcttttacggtagggcagacagccctaaaagttgcatcaaacaaagtggccaaacatgagaaagcatgttctgacagtcaacatgt 183  Q
    |||||| ||| ||||||||||||||||| || |||  | |||||| ||  |||| |||||  ||||||||||||||| | |||||| ||| ||||||||     
T  29338022 gattagtggtcggggcttttacggtaggacaaacaatcataaaagatgtgtcaagcaaagctgccaaacatgagaaaacgtgttctaacaatcaacatgc 29338121  T
Q  184 ttttataccatttgtttttgacactt 209  Q
    | |||||||||||| |||||||||||    
T  29338122 tcttataccatttgcttttgacactt 29338147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 8 - 151
Target Start/End: Original strand, 20693467 - 20693610
Alignment:
Q  8 tgcagatgttatggtgtacaaatgggtaagaggaaacactcatttgtagacttgaccagtatttcaccactcatgggattaggggttggggcttttacgg 107  Q
    ||||||| |||||||||||| ||||||| |||||||   |  | |||  |||||| |||  ||||||||||| ||||||||| |||  | |||||||| |    
T  20693467 tgcagatattatggtgtacagatgggtaggaggaaaacatgctatgtgaacttgatcagggtttcaccactcgtgggattagaggtctgagcttttacag 20693566  T
Q  108 tagggcagacagccctaaaagttgcatcaaacaaagtggccaaa 151  Q
    |||  || || |||||||| ||||||||||||||||||||||||    
T  20693567 tagaacatacggccctaaaggttgcatcaaacaaagtggccaaa 20693610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 123 - 212
Target Start/End: Complemental strand, 3715042 - 3714953
Alignment:
Q  123 taaaagttgcatcaaacaaagtggccaaacatgagaaagcatgttctgacagtcaacatgtttttataccatttgtttttgacacttttg 212  Q
    |||||||||  ||||||||| |||  |||||||||||| | |||||| ||| | |||||||||||||| ||| |||||||||||||||||    
T  3715042 taaaagttgtgtcaaacaaaatggttaaacatgagaaaacgtgttctcacaattaacatgtttttatatcatctgtttttgacacttttg 3714953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 228 - 286
Target Start/End: Original strand, 29338189 - 29338247
Alignment:
Q  228 gttcaaagggtcatgcacaacaatgtcataactccaaggtctgtgaatgttgtgtttac 286  Q
    ||||||||||||||||||| ||||||||| ||||| |||||  ||||||||||||||||    
T  29338189 gttcaaagggtcatgcacatcaatgtcatgactcctaggtccatgaatgttgtgtttac 29338247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 117 - 210
Target Start/End: Complemental strand, 28626062 - 28625968
Alignment:
Q  117 cagccctaaaagttgcatcaaacaaagtggccaaacatgagaaagcatgttctgacagtcaacatgttttt-ataccatttgtttttgacacttt 210  Q
    ||||||| |||| ||| ||||  || ||||| ||||| |||||| | |||||||||| ||||||| ||||| ||||||||||||||| |||||||    
T  28626062 cagcccttaaagctgcgtcaagtaaggtggctaaacacgagaaaacgtgttctgacaatcaacattttttttataccatttgttttttacacttt 28625968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 225 - 293
Target Start/End: Complemental strand, 28625930 - 28625863
Alignment:
Q  225 aaagttcaaagggtcatgcacaacaatgtcataactccaaggtctgtgaatgttgtgtttacgaagatt 293  Q
    |||||||||| ||||||||| |||| ||||||| |||  |||||| ||||||||||||||||| |||||    
T  28625930 aaagttcaaaaggtcatgcataaca-tgtcatatctcataggtctatgaatgttgtgtttacggagatt 28625863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 129 - 212
Target Start/End: Complemental strand, 6225191 - 6225108
Alignment:
Q  129 ttgcatcaaacaaagtggccaaacatgagaaagcatgttctgacagtcaacatgtttttataccatttgtttttgacacttttg 212  Q
    |||| ||||| ||||||| |||||||||||||   |||| ||||| |||||||| || |||  ||||||| |||||||||||||    
T  6225191 ttgcgtcaaataaagtggtcaaacatgagaaattttgttgtgacaatcaacatgcttatatgtcatttgtgtttgacacttttg 6225108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 227 - 286
Target Start/End: Original strand, 28009096 - 28009155
Alignment:
Q  227 agttcaaagggtcatgcacaacaatgtcataactccaaggtctgtgaatgttgtgtttac 286  Q
    ||||||||||||||| |||||||||||||| ||||| |||||  |||| ||||| |||||    
T  28009096 agttcaaagggtcatacacaacaatgtcatgactcctaggtccatgaacgttgtctttac 28009155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 144 - 213
Target Start/End: Original strand, 7200540 - 7200607
Alignment:
Q  144 tggccaaacatgagaaagcatgttctgacagtcaacatgtttttataccatttgtttttgacacttttgg 213  Q
    ||||||||||||||||| |  ||||  ||| |||||||||||||||  ||||||| ||||||||||||||    
T  7200540 tggccaaacatgagaaatcgagttcaaacaatcaacatgtttttat--catttgtgtttgacacttttgg 7200607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 87; Significance: 3e-41; HSPs: 27)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 87; E-Value: 3e-41
Query Start/End: Original strand, 69 - 219
Target Start/End: Complemental strand, 34644745 - 34644595
Alignment:
Q  69 tttcaccactcatgggattaggggttggggcttttacggtagggcagacagccctaaaagttgcatcaaacaaagtggccaaacatgagaaagcatgttc 168  Q
    ||||||||||  |||| |||||||| ||||||||||||||||| ||  || ||||||||||||| ||||||||||||||||||||||||||||| |||||    
T  34644745 tttcaccacttgtgggtttaggggtcggggcttttacggtaggacaagcaaccctaaaagttgcgtcaaacaaagtggccaaacatgagaaagcgtgttc 34644646  T
Q  169 tgacagtcaacatgtttttataccatttgtttttgacacttttggtttcct 219  Q
    |||||  | ||||| ||||||||||||||||||||||||||| || |||||    
T  34644645 tgacaacctacatgcttttataccatttgtttttgacactttcggcttcct 34644595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 80; E-Value: 4e-37
Query Start/End: Original strand, 52 - 219
Target Start/End: Complemental strand, 19035643 - 19035476
Alignment:
Q  52 tgtagacttgaccagtatttcaccactcatgggattaggggttggggcttttacggtagggcagacagccctaaaagttgcatcaaacaaagtggccaaa 151  Q
    ||||||||||||  | ||||||||| |  |||||||||| || ||  ||||||| ||||||||| |||||||||||| ||| |||| |||||||||||||    
T  19035643 tgtagacttgactgggatttcaccagttgtgggattaggtgtcggaccttttaccgtagggcaggcagccctaaaagctgcgtcaagcaaagtggccaaa 19035544  T
Q  152 catgagaaagcatgttctgacagtcaacatgtttttataccatttgtttttgacacttttggtttcct 219  Q
    ||||||||||| |||||||||| |||||||| |||||||||||||  |||||||||||  ||||||||    
T  19035543 catgagaaagcgtgttctgacaatcaacatgcttttataccatttacttttgacacttacggtttcct 19035476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 13 - 202
Target Start/End: Original strand, 50161288 - 50161478
Alignment:
Q  13 atgttatggtgtacaaatgggtaagaggaaa-cactcatttgtagacttgaccagtatttcaccactcatgggattaggggttggggcttttacggtagg 111  Q
    ||||||||||||||   |||||||||| ||| ||  ||| ||| ||||| |||  ||||||||||||| ||| |||||||| || | |||||||||||||    
T  50161288 atgttatggtgtacggttgggtaagagaaaaacatgcatgtgtggacttaaccgatatttcaccactcgtggaattaggggctgagacttttacggtagg 50161387  T
Q  112 gcagacagccctaaaagttgcatcaaacaaagtggccaaacatgagaaagcatgttctgacagtcaacatgtttttataccatttgttttt 202  Q
     |||||| ||||||||||||| |||| |||||||| ||||||||||||||| |||||| ||| |||||||| ||||||| ||||| |||||    
T  50161388 acagacaaccctaaaagttgcgtcaagcaaagtggacaaacatgagaaagcgtgttctcacaatcaacatgcttttatatcattttttttt 50161478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 73; E-Value: 6e-33
Query Start/End: Original strand, 8 - 219
Target Start/End: Original strand, 28040993 - 28041205
Alignment:
Q  8 tgcagatgttatggtgtacaaatgggtaagaggaaa-cactcatttgtagacttgaccagtatttcaccactcatgggattaggggttggggcttttacg 106  Q
    |||||||||||||||||||| ||||||| | ||||| ||  | | ||||||||||||  |  |||||| |||  |||||||||| || ||  |||||||     
T  28040993 tgcagatgttatggtgtacagatgggtaggtggaaaacatgcttgtgtagacttgactggggtttcactacttgtgggattaggtgtcggaccttttacc 28041092  T
Q  107 gtagggcagacagccctaaaagttgcatcaaacaaagtggccaaacatgagaaagcatgttctgacagtcaacatgtttttataccatttgtttttgaca 206  Q
    |||||  || |||| ||||||   || ||||||||||||||||||||||||||||  |||||||||| |||||| |||||||||||||||| ||||||||    
T  28041093 gtaggataggcagctctaaaatccgcgtcaaacaaagtggccaaacatgagaaagtgtgttctgacaatcaacaggtttttataccatttgcttttgaca 28041192  T
Q  207 cttttggtttcct 219  Q
    |||| ||||||||    
T  28041193 ctttcggtttcct 28041205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 73; E-Value: 6e-33
Query Start/End: Original strand, 12 - 219
Target Start/End: Original strand, 29169664 - 29169871
Alignment:
Q  12 gatgttatggtgtacaaatgggtaagaggaaa-cactcatttgtagacttgaccagtatttcaccactcatgggattaggggttggggcttttacggtag 110  Q
    |||||||||||||||  || |||| ||||||| ||  ||| ||||||||||||  |  ||||||||||  |||||||||| || ||| ||||||| ||||    
T  29169664 gatgttatggtgtacggataggtaggaggaaaacatgcatgtgtagacttgactggggtttcaccactt-tgggattaggtgtcgggccttttaccgtag 29169762  T
Q  111 ggcagacagccctaaaagttgcatcaaacaaagtggccaaacatgagaaagcatgttctgacagtcaacatgtttttataccatttgtttttgacacttt 210  Q
    | ||||||||||| |||||||  ||||  || ||||||||||| |||||| | |||||||||| |||||||| |||||||||||||| ||||||||||||    
T  29169763 gacagacagcccttaaagttgtgtcaagtaaggtggccaaacacgagaaaacgtgttctgacaatcaacatgcttttataccatttgcttttgacacttt 29169862  T
Q  211 tggtttcct 219  Q
     ||||||||    
T  29169863 cggtttcct 29169871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 59 - 219
Target Start/End: Original strand, 25375751 - 25375911
Alignment:
Q  59 ttgaccagtatttcaccactcatgggattaggggttggggcttttacggtagggcagacagccctaaaagttgcatcaaacaaagtggccaaacatgaga 158  Q
    ||||||||  |||||| |||| | |||||||||||  | |||||||||||||| |||||| | | ||||||||| |||| ||||||| |||||||||| |    
T  25375751 ttgaccagggtttcactactcgtcggattaggggtcagagcttttacggtaggacagacaactccaaaagttgcgtcaagcaaagtgaccaaacatgaca 25375850  T
Q  159 aagcatgttctgacagtcaacatgtttttataccatttgtttttgacacttttggtttcct 219  Q
    || |||||||| ||  ||||||||||||||||||||||| | ||||||||||||| |||||    
T  25375851 aaacatgttcttaccatcaacatgtttttataccatttgctattgacacttttggcttcct 25375911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 68 - 218
Target Start/End: Complemental strand, 42920039 - 42919890
Alignment:
Q  68 atttcaccactcatgggattaggggttggggcttttacggtagggcagacagccctaaaagttgcatcaaacaaagtggccaaacatgagaaagcatgtt 167  Q
    ||||||| |||| |||||||| |||| || ||||||| | |||| || ||| |||||||||||||||||||||||| |||||||||||||||| | ||||    
T  42920039 atttcactactcgtgggattacgggtcggagcttttatgataggacaaacaaccctaaaagttgcatcaaacaaagcggccaaacatgagaaa-cgtgtt 42919941  T
Q  168 ctgacagtcaacatgtttttataccatttgtttttgacacttttggtttcc 218  Q
    || ||| |||||||||||||||  ||| || |||||||||||||| |||||    
T  42919940 ctcacaatcaacatgtttttatgtcatctgcttttgacacttttgatttcc 42919890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 6 - 219
Target Start/End: Original strand, 45659511 - 45659726
Alignment:
Q  6 catgcagatgttatggtgtacaaatgggtaagaggaaa-cactcatttgtagacttgaccagtatttcaccactcatgggattaggggttggggctttta 104  Q
    |||||| ||||||| ||||||| ||||||| ||||||| ||  |||  |||||||||||  |  ||||||||||  ||||||||||  | ||| ||||||    
T  45659511 catgcacatgttatagtgtacagatgggtaggaggaaaacatgcatgcgtagacttgactggggtttcaccacttgtgggattaggtatcgggcctttta 45659610  T
Q  105 cggtagggcagacagccct-aaaagttgcatcaaacaaagtggccaaacatgagaaagcatgttctgacagtcaacatgtttttataccatttgtttttg 203  Q
    | ||||| ||  ||||||| ||||| ||| ||||  || ||||||||||| |||||||| |||||||||| |||||||| |||||||||||||| |||||    
T  45659611 ccgtaggacatgcagcccttaaaagctgcgtcaagtaaggtggccaaacacgagaaagcgtgttctgacaatcaacatgcttttataccatttgcttttg 45659710  T
Q  204 acacttttggtttcct 219  Q
    ||||||| | ||||||    
T  45659711 acactttcgatttcct 45659726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 99 - 210
Target Start/End: Original strand, 31737281 - 31737392
Alignment:
Q  99 cttttacggtagggcagacagccctaaaagttgcatcaaacaaagtggccaaacatgagaaagcatgttctgacagtcaacatgtttttataccatttgt 198  Q
    ||||||||||| |  | || ||||||||||  || |||| |||||||||||||||||||||| ||| |||||||| |||||||| |||||||||||||||    
T  31737281 cttttacggtaagataaacggccctaaaagcggcgtcaagcaaagtggccaaacatgagaaaacatattctgacaatcaacatgcttttataccatttgt 31737380  T
Q  199 ttttgacacttt 210  Q
    ||||||||||||    
T  31737381 ttttgacacttt 31737392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 69 - 210
Target Start/End: Complemental strand, 2764658 - 2764517
Alignment:
Q  69 tttcaccactcatgggattaggggttggggcttttacggtagggcagacagccctaaaagttgcatcaaacaaagtggccaaacatgagaaagcatgttc 168  Q
    ||||||||||  |||| ||||||||||| ||||||| ||||||  || ||| |||||||||||  ||| ||||||||| ||||||||||||| | |||||    
T  2764658 tttcaccacttgtgggtttaggggttggtgcttttatggtaggataggcagtcctaaaagttgtgtcagacaaagtggtcaaacatgagaaaacgtgttc 2764559  T
Q  169 tgacagtcaacatgtttttataccatttgtttttgacacttt 210  Q
     |||| |||||||| |||||| ||||||  ||||||||||||    
T  2764558 cgacaatcaacatgcttttatgccattttcttttgacacttt 2764517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 13 - 220
Target Start/End: Complemental strand, 37200217 - 37200011
Alignment:
Q  13 atgttatggtgtacaaatgggtaagaggaaa-cactcatttgtagacttgaccagtatttcaccactcatgggattaggggttggggcttttacggtagg 111  Q
    ||||||||| |||| |||||||||||||||| ||  ||| ||| ||||||||   | ||||||||||| |||||||| ||   || ||||||||  ||||    
T  37200217 atgttatggggtaccaatgggtaagaggaaaacatgcatgtgt-gacttgactgatgtttcaccactcgtgggattaaggaccggagcttttacaatagg 37200119  T
Q  112 gcagacagccctaaaagttgcatcaaacaaagtggccaaacatgagaaagcatgttctgacagtcaacatgtttttataccatttgtttttgacactttt 211  Q
     ||  ||||| |||||||| | ||||  ||||||| ||||||| ||||||||||| || ||| |||| ||||||||||||||||||||||| ||||||||    
T  37200118 acatgcagccataaaagttacgtcaagtaaagtggtcaaacataagaaagcatgtgctaacaatcaatatgtttttataccatttgttttt-acactttt 37200020  T
Q  212 ggtttcctt 220  Q
    || ||||||    
T  37200019 ggcttcctt 37200011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 144 - 209
Target Start/End: Complemental strand, 21473107 - 21473042
Alignment:
Q  144 tggccaaacatgagaaagcatgttctgacagtcaacatgtttttataccatttgtttttgacactt 209  Q
    ||||||||||||||||||| |||||||||| ||||||||||||||||||||||| |||||||||||    
T  21473107 tggccaaacatgagaaagcgtgttctgacaatcaacatgtttttataccatttgcttttgacactt 21473042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 118 - 217
Target Start/End: Original strand, 20259774 - 20259873
Alignment:
Q  118 agccctaaaagttgcatcaaacaaagtggccaaacatgagaaagcatgttctgacagtcaacatgtttttataccatttgtttttgacacttttggtttc 217  Q
    ||||||||||| | | |||| ||||||||  ||| |||||||||| |||||||||| |||||||||||||||||||||| || |||||||||| ||||||    
T  20259774 agccctaaaagctacgtcaagcaaagtggttaaaaatgagaaagcgtgttctgacaatcaacatgtttttataccatttattgttgacactttcggtttc 20259873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 10 - 219
Target Start/End: Original strand, 4861857 - 4862067
Alignment:
Q  10 cagatgttatggtgtacaaatgggtaagaggaaa-cactcatttgtagacttgaccagtatttcaccactcatgggattaggggttggggcttttacggt 108  Q
    |||||||||||||||||  ||||||| ||| ||| ||  ||| ||| || |||||  || ||||||||||  | |||||||||||   | | |||| |||    
T  4861857 cagatgttatggtgtacggatgggtaggagaaaaacatgcatgtgtggatttgactggtgtttcaccacttgttggattaggggtcttgacatttatggt 4861956  T
Q  109 agggcagacagccctaaaagttgcatcaaacaaagtggccaaacatgagaaagcatgttctgacagtcaacatgtttttataccatttgtttttgacact 208  Q
    ||| ||||||||| |||||||||| ||||  ||| ||| ||||||||||||||| | ||||||||  ||||||  |||||||| ||||| ||||||||||    
T  4861957 aggacagacagccttaaaagttgcgtcaagtaaaatggtcaaacatgagaaagcgtcttctgacaagcaacatacttttatacaatttgcttttgacact 4862056  T
Q  209 tttggtttcct 219  Q
    || | ||||||    
T  4862057 ttcgatttcct 4862067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 121 - 219
Target Start/End: Complemental strand, 22347022 - 22346924
Alignment:
Q  121 cctaaaagttgcatcaaacaaagtggccaaacatgagaaagcatgttctgacagtcaacatgtttttataccatttgtttttgacacttttggtttcct 219  Q
    ||||||||||   |||| ||||||||||||| |||||||||| |||||||||| ||||||||  |||||||| |||| |||||||||||| ||||||||    
T  22347022 cctaaaagttatgtcaagcaaagtggccaaatatgagaaagcgtgttctgacaatcaacatgcgtttataccttttgcttttgacactttcggtttcct 22346924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 95 - 212
Target Start/End: Complemental strand, 16500187 - 16500070
Alignment:
Q  95 ggggcttttacggtagggcagacagccctaaaagttgcatcaaacaaagtggccaaacatgagaaagcatgttctgacagtcaacatgtttttataccat 194  Q
    ||||||||||||||||| ||||||  |||||||||||| |||   |||||||||||| || ||||| |||||||| ||| | ||||||  ||||||| ||    
T  16500187 ggggcttttacggtaggacagacaatcctaaaagttgcgtcacgtaaagtggccaaatataagaaaacatgttctaacaattaacatgcctttatactat 16500088  T
Q  195 ttgtttttgacacttttg 212  Q
    ||| ||||||||||||||    
T  16500087 ttgcttttgacacttttg 16500070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 120 - 219
Target Start/End: Complemental strand, 2898833 - 2898731
Alignment:
Q  120 ccctaaaagttgcatcaaacaaagtggccaaacatgagaa----agcatgttctgacagtcaacatgtttttataccatttgtttttgacacttttggtt 215  Q
    ||||||||| |||||||| |||||||||||||||||||||    ||| |||||||||| |||| | |||||||||||||||| |||||| ||||| ||||    
T  2898833 ccctaaaagatgcatcaagcaaagtggccaaacatgagaaagtgagcgtgttctgacaatcaata-gtttttataccatttgcttttgatactttcggtt 2898735  T
Q  216 tcct 219  Q
    ||||    
T  2898734 tcct 2898731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 123 - 216
Target Start/End: Complemental strand, 36487011 - 36486918
Alignment:
Q  123 taaaagttgcatcaaacaaagtggccaaacatgagaaagcatgttctgacagtcaacatgtttttataccatttgtttttgacacttttggttt 216  Q
    ||||| |||||||||  ||||||| |||| |||||||||| |||| ||||| |||| || ||||||||  ||||| ||||||||||||||||||    
T  36487011 taaaaattgcatcaagtaaagtggtcaaatatgagaaagcgtgttttgacaatcaatatctttttatataatttgcttttgacacttttggttt 36486918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 227 - 288
Target Start/End: Complemental strand, 38731607 - 38731546
Alignment:
Q  227 agttcaaagggtcatgcacaacaatgtcataactccaaggtctgtgaatgttgtgtttacga 288  Q
    ||||||||||||||||||||| |||||||| ||||| |||||  ||||| ||||||||||||    
T  38731607 agttcaaagggtcatgcacaataatgtcatgactcctaggtccatgaatattgtgtttacga 38731546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 120 - 196
Target Start/End: Complemental strand, 23044005 - 23043929
Alignment:
Q  120 ccctaaaagttgcatcaaacaaagtggccaaacatgagaaagcatgttctgacagtcaacatgtttttataccattt 196  Q
    |||| |||| |||||||| ||||||||||||| |||||||| || || || ||| |||||||| |||||||||||||    
T  23044005 ccctcaaagctgcatcaagcaaagtggccaaatatgagaaaacaagtactcacaatcaacatgcttttataccattt 23043929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 69 - 188
Target Start/End: Original strand, 37932146 - 37932264
Alignment:
Q  69 tttcaccactcatgggattaggggttggggcttttacggtagggcagacagccctaaaagttgcatcaaacaaagtggccaaacatgagaaagcatgttc 168  Q
    ||||||||||  ||||||||||||    ||||||||| ||| | |||||||||||||||||||  |||| |||| ||| |||| | |||||||  |||||    
T  37932146 tttcaccacttgtgggattaggggccaaggcttttacagtaagacagacagccctaaaagttgtgtcaagcaaaatggtcaaatacgagaaag-gtgttc 37932244  T
Q  169 tgacagtcaacatgttttta 188  Q
    ||||| ||||| ||||||||    
T  37932245 tgacaatcaacgtgttttta 37932264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 170 - 219
Target Start/End: Original strand, 24177540 - 24177589
Alignment:
Q  170 gacagtcaacatgtttttataccatttgtttttgacacttttggtttcct 219  Q
    |||| ||||||| |||||||||||||||||||||||| ||| ||||||||    
T  24177540 gacaatcaacatatttttataccatttgtttttgacagtttcggtttcct 24177589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 130 - 211
Target Start/End: Original strand, 50314613 - 50314694
Alignment:
Q  130 tgcatcaaacaaagtggccaaacatgagaaagcatgttctgacagtcaacatgtttttataccatttgtttttgacactttt 211  Q
    ||||| || |||||||| ||||||||| ||| | |||||| ||| |||||||| |||||||||||||  |||||||| ||||    
T  50314613 tgcataaagcaaagtggtcaaacatgacaaaacttgttctcacaatcaacatgcttttataccatttacttttgacattttt 50314694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 124 - 191
Target Start/End: Original strand, 35387643 - 35387710
Alignment:
Q  124 aaaagttgcatcaaacaaagtggccaaacatgagaaagcatgttctgacagtcaacatgtttttatac 191  Q
    |||| ||||||||| |||||||||||||||||| ||||  |||||||||  |||||| | ||||||||    
T  35387643 aaaatttgcatcaagcaaagtggccaaacatgaaaaagtgtgttctgacgatcaacaagcttttatac 35387710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 158 - 219
Target Start/End: Complemental strand, 7213341 - 7213279
Alignment:
Q  158 aaagcatgttctgacagtcaacatgttttt-ataccatttgtttttgacacttttggtttcct 219  Q
    |||||||||||||| | | ||||||||||| ||| ||||| ||||||||||||| ||||||||    
T  7213341 aaagcatgttctgataattaacatgttttttatatcatttatttttgacactttcggtttcct 7213279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 149 - 183
Target Start/End: Complemental strand, 19035458 - 19035424
Alignment:
Q  149 aaacatgagaaagcatgttctgacagtcaacatgt 183  Q
    ||||||||||||||||||||||||| |||||||||    
T  19035458 aaacatgagaaagcatgttctgacaatcaacatgt 19035424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 177 - 219
Target Start/End: Complemental strand, 47459753 - 47459711
Alignment:
Q  177 aacatgtttttataccatttgtttttgacacttttggtttcct 219  Q
    ||||||||||||||||||||| |||||| |||||||| |||||    
T  47459753 aacatgtttttataccatttgcttttgatacttttggcttcct 47459711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 84; Significance: 2e-39; HSPs: 24)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 71 - 210
Target Start/End: Complemental strand, 38815471 - 38815332
Alignment:
Q  71 tcaccactcatgggattaggggttggggcttttacggtagggcagacagccctaaaagttgcatcaaacaaagtggccaaacatgagaaagcatgttctg 170  Q
    ||||||||  ||||||||||||| |||||||||| |||||| ||||||||||||||||   |  |||||||||||||||||||||||||||| |||||||    
T  38815471 tcaccacttgtgggattaggggtcggggcttttatggtaggacagacagccctaaaagccacgccaaacaaagtggccaaacatgagaaagcgtgttctg 38815372  T
Q  171 acagtcaacatgtttttataccatttgtttttgacacttt 210  Q
    ||| |||||||| |||||||||||||| ||||||||||||    
T  38815371 acaatcaacatgcttttataccatttgcttttgacacttt 38815332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 69 - 212
Target Start/End: Complemental strand, 39434846 - 39434703
Alignment:
Q  69 tttcaccactcatgggattaggggttggggcttttacggtagggcagacagccctaaaagttgcatcaaacaaagtggccaaacatgagaaagcatgttc 168  Q
    ||||||||||  |||| |||||||| | ||||||||| ||||| |||  ||| ||||||||||| |||| |||||||||||||||||||||||| |||||    
T  39434846 tttcaccacttgtgggtttaggggtggaggcttttacagtaggacaggaagctctaaaagttgcgtcaagcaaagtggccaaacatgagaaagcgtgttc 39434747  T
Q  169 tgacagtcaacatgtttttataccatttgtttttgacacttttg 212  Q
    ||||| |||||||| |||||||||||||||||||||||||||||    
T  39434746 tgacaatcaacatgcttttataccatttgtttttgacacttttg 39434703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 83; E-Value: 7e-39
Query Start/End: Original strand, 69 - 219
Target Start/End: Complemental strand, 500406 - 500256
Alignment:
Q  69 tttcaccactcatgggattaggggttggggcttttacggtagggcagacagccctaaaagttgcatcaaacaaagtggccaaacatgagaaagcatgttc 168  Q
    ||||||||||  |||||||||| || ||| ||||||||||||| | |||||||||||||||||| |||| |||||||||||||||||||||| | |||||    
T  500406 tttcaccacttgtgggattaggtgtcgggccttttacggtaggaccgacagccctaaaagttgcgtcaagcaaagtggccaaacatgagaaaacgtgttc 500307  T
Q  169 tgacagtcaacatgtttttataccatttgtttttgacacttttggtttcct 219  Q
    ||||| |||||||| |||||||||||||  |||||||| ||| ||||||||    
T  500306 tgacaatcaacatgcttttataccatttacttttgacattttcggtttcct 500256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 80; E-Value: 4e-37
Query Start/End: Original strand, 1 - 219
Target Start/End: Original strand, 35739846 - 35740064
Alignment:
Q  1 ttagtcatgcagatgttatggtgtacaaatgggtaagaggaaa-cactcatttgtagacttgaccagtatttcaccactcatgggattaggggttggggc 99  Q
    |||| ||||||||||||||||||||  |||||||| ||||||| ||  ||| ||| ||||||||  |  ||||||||||  |||||||| || | ||| |    
T  35739846 ttaggcatgcagatgttatggtgtatgaatgggtaggaggaaaacatgcatgtgtggacttgactggggtttcaccactagtgggattaagg-tcgggcc 35739944  T
Q  100 ttttacggtagggcagacagccctaaaagttgcatcaaacaaagtggccaaacatgagaaagcatgttctgacagtcaacatgtttttataccatttgtt 199  Q
    |||||||||||| |||||| ||||||||||||  | || ||||||||||||||||||||||||  ||||||||| ||||||||||||||||| ||| | |    
T  35739945 ttttacggtaggacagacatccctaaaagttgtgttaagcaaagtggccaaacatgagaaagcgggttctgacaatcaacatgtttttatacaattagct 35740044  T
Q  200 tttgacacttttggtttcct 219  Q
    |||||||||||  |||||||    
T  35740045 tttgacactttcagtttcct 35740064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 8 - 219
Target Start/End: Original strand, 25021680 - 25021892
Alignment:
Q  8 tgcagatgttatggtgtacaaatgggtaagaggaaa-cactcatttgtagacttgaccagtatttcaccactcatgggattaggggttggggcttttacg 106  Q
    |||||||||||||||||||  ||||||| ||||||| ||  ||| ||| ||||||||| |  ||||||||||  ||||||||||||| |  | ||||||     
T  25021680 tgcagatgttatggtgtacggatgggtaggaggaaaacatgcatgtgtggacttgaccggagtttcaccacttgtgggattaggggtcgatgtttttaca 25021779  T
Q  107 gtagggcagacagccctaaaagttgcatcaaacaaagtggccaaacatgagaaagcatgttctgacagtcaacatgtttttataccatttgtttttgaca 206  Q
    ||| | || ||||||||||||||||  |||| ||||||||  ||| |||||||||  |||||| ||| ||||||||||||||||||||||  ||||||||    
T  25021780 gtatgacatacagccctaaaagttgtgtcaagcaaagtggtgaaatatgagaaagtgtgttctcacaatcaacatgtttttataccattttcttttgaca 25021879  T
Q  207 cttttggtttcct 219  Q
     |||||| |||||    
T  25021880 tttttggcttcct 25021892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 68; E-Value: 6e-30
Query Start/End: Original strand, 69 - 219
Target Start/End: Complemental strand, 3188148 - 3187998
Alignment:
Q  69 tttcaccactcatgggattaggggttggggcttttacggtagggcagacagcc-ctaaaagttgcatcaaacaaagtggccaaacatgagaaagcatgtt 167  Q
    ||||||||||  |||| |||||| | ||||||||||||||||| |||  |||| |||||||||||||||| ||||||||| ||||||||| |||| ||||    
T  3188148 tttcaccacttgtgggtttaggg-tcggggcttttacggtaggacaggaagcctctaaaagttgcatcaagcaaagtggcaaaacatgaggaagcgtgtt 3188050  T
Q  168 ctgacagtcaacatgtttttataccatttgtttttgacacttttggtttcct 219  Q
    |||||| |||||||| |||||||||||||| |||||| ||||| || |||||    
T  3188049 ctgacaatcaacatgcttttataccatttgcttttgaaactttcggcttcct 3187998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 68; E-Value: 6e-30
Query Start/End: Original strand, 52 - 219
Target Start/End: Complemental strand, 24125224 - 24125057
Alignment:
Q  52 tgtagacttgaccagtatttcaccactcatgggattaggggttggggcttttacggtagggcagacagccctaaaagttgcatcaaacaaagtggccaaa 151  Q
    ||||||||||||  |  ||||||||||  |||||||| | || | | |||||||||| || ||  |||||||||||| |||||||| |||| ||||||||    
T  24125224 tgtagacttgactggggtttcaccacttgtgggattatgcgtcgtgccttttacggtgggacaagcagccctaaaagctgcatcaagcaaaatggccaaa 24125125  T
Q  152 catgagaaagcatgttctgacagtcaacatgtttttataccatttgtttttgacacttttggtttcct 219  Q
    ||||||||||| || ||||||| |||||||| |||||||||||||| |||||||| ||||| ||||||    
T  24125124 catgagaaagcgtgctctgacaatcaacatgcttttataccatttgcttttgacaattttgatttcct 24125057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 99 - 219
Target Start/End: Complemental strand, 6592724 - 6592604
Alignment:
Q  99 cttttacggtagggcagacagccctaaaagttgcatcaaacaaagtggccaaacatgagaaagcatgttctgacagtcaacatgtttttataccatttgt 198  Q
    |||||||| ||||  |||||| | |||||| ||| |||| |||||||||||||||||||||||| |||||| ||| |||||||| ||||| ||||||||     
T  6592724 cttttacgataggatagacagtcgtaaaagctgcgtcaagcaaagtggccaaacatgagaaagcgtgttctcacaatcaacatgattttaaaccatttgc 6592625  T
Q  199 ttttgacacttttggtttcct 219  Q
    ||||||||||||  |||||||    
T  6592624 ttttgacactttcagtttcct 6592604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 56; E-Value: 9e-23
Query Start/End: Original strand, 10 - 213
Target Start/End: Complemental strand, 8620047 - 8619849
Alignment:
Q  10 cagatgttatggtgtacaaatgggtaagaggaaacactcatttgtagacttgaccagtatttcaccactcatgggattaggggttggggcttttacggta 109  Q
    ||||||||||||||||| ||||||||||||||||     || |||  |||||||  |  ||||||||||  ||||||||| | | | | |||||||| ||    
T  8620047 cagatgttatggtgtacgaatgggtaagaggaaa-----atgtgtgaacttgactggggtttcaccacttgtgggattagagatcgtgacttttacgata 8619953  T
Q  110 gggcagacagccctaaaagttgcatcaaacaaagtggccaaacatgagaaagcatgttctgacagtcaacatgtttttataccatttgtttttgacactt 209  Q
    |  |||||||||||||||||||| ||||  ||| ||| ||||||||| ||||| | || ||||| ||||| || ||||||||||||||||||| ||| ||    
T  8619952 gaacagacagccctaaaagttgcgtcaagtaaaatggtcaaacatgaaaaagcgtattttgacaatcaacgtgcttttataccatttgtttttaacattt 8619853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 56; E-Value: 9e-23
Query Start/End: Original strand, 84 - 219
Target Start/End: Complemental strand, 10189707 - 10189572
Alignment:
Q  84 gattaggggttggggcttttacggtagggcagacagccctaaaagttgcatcaaacaaagtggccaaacatgagaaagcatgttctgacagtcaacatgt 183  Q
    |||||||||||  |||||||| |||||| || |||  ||||||||||||  |||  ||||| | |||||| ||||||||||||||||||| |||||||||    
T  10189707 gattaggggttaaggcttttatggtaggacatacattcctaaaagttgcgccaattaaagtagtcaaacaagagaaagcatgttctgacaatcaacatgt 10189608  T
Q  184 ttttataccatttgtttttgacacttttggtttcct 219  Q
    ||||||| ||||||  ||||||| |||||| |||||    
T  10189607 ttttatatcatttgcatttgacatttttggcttcct 10189572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 98 - 212
Target Start/End: Complemental strand, 4073685 - 4073571
Alignment:
Q  98 gcttttacggtagggcagacagccctaaaagttgcatcaaacaaagtggccaaacatgagaaagcatgttctgacagtcaacatgtttttataccatttg 197  Q
    ||||||||||| |  |||||| ||||||||||||||||||||||||||| |||||| |||||| | |||| |  || |||||||| |||||||| |||||    
T  4073685 gcttttacggtggaacagacaaccctaaaagttgcatcaaacaaagtggtcaaacaagagaaaacgtgttttaccaatcaacatgattttatacaatttg 4073586  T
Q  198 tttttgacacttttg 212  Q
      |||||||||||||    
T  4073585 catttgacacttttg 4073571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 134 - 204
Target Start/End: Complemental strand, 8882441 - 8882371
Alignment:
Q  134 tcaaacaaagtggccaaacatgagaaagcatgttctgacagtcaacatgtttttataccatttgtttttga 204  Q
    |||| |||||||||||||||||||||||| |||||||||| |||| ||| ||||| |||||||||||||||    
T  8882441 tcaagcaaagtggccaaacatgagaaagcgtgttctgacaatcaatatgcttttaaaccatttgtttttga 8882371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 116 - 212
Target Start/End: Complemental strand, 28196324 - 28196228
Alignment:
Q  116 acagccctaaaagttgcatcaaacaaagtggccaaacatgagaaagcatgttctgacagtcaacatgtttttataccatttgtttttgacacttttg 212  Q
    |||| |||||||  ||||||||  |||| ||| |||||||||||||  |||| ||| | | ||||||||||||||||||||||||||||||||||||    
T  28196324 acagtcctaaaaactgcatcaagtaaagcggctaaacatgagaaagtgtgttatgataataaacatgtttttataccatttgtttttgacacttttg 28196228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 99 - 179
Target Start/End: Complemental strand, 37517243 - 37517163
Alignment:
Q  99 cttttacggtagggcagacagccctaaaagttgcatcaaacaaagtggccaaacatgagaaagcatgttctgacagtcaac 179  Q
    ||||||| ||||| |||||||| ||||||| |||||||| |||||||||||||||||||||||  ||||| |||| |||||    
T  37517243 cttttaccgtaggacagacagctctaaaagctgcatcaagcaaagtggccaaacatgagaaagggtgttccgacaatcaac 37517163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 223 - 286
Target Start/End: Original strand, 25021919 - 25021982
Alignment:
Q  223 acaaagttcaaagggtcatgcacaacaatgtcataactccaaggtctgtgaatgttgtgtttac 286  Q
    ||||||||||||||||||||||||||||||||||| |||| |||||   |||||||||||||||    
T  25021919 acaaagttcaaagggtcatgcacaacaatgtcatatctcctaggtccaggaatgttgtgtttac 25021982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 117 - 288
Target Start/End: Original strand, 42922103 - 42922273
Alignment:
Q  117 cagccctaaaagttgcatcaaacaaagtggccaaacatgagaaagcatgttctgacagtcaacatgtttttataccatttgtttttgacacttttggttt 216  Q
    ||||| |||||||||| ||||||||| ||| ||||  ||||||| | |||| ||||| |||| ||| ||||| | ||||||  |||||||||||||| ||    
T  42922103 cagccataaaagttgcgtcaaacaaaatggtcaaatttgagaaaacgtgttttgacaatcaaaatgcttttaaatcatttgcctttgacacttttggctt 42922202  T
Q  217 ccttctacaaagttcaaagggtcatgcacaacaatgtcataactccaaggtctgtgaatgttgtgtttacga 288  Q
    |||   | | |||| |||  || |||||||||||||||||||||||  ||||  ||||| ||||||||||||    
T  42922203 cctaacatagagtttaaa-agttatgcacaacaatgtcataactcctcggtccatgaatattgtgtttacga 42922273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 123 - 219
Target Start/End: Complemental strand, 6618409 - 6618313
Alignment:
Q  123 taaaagttgcatcaaacaaagtggccaaacatgagaaagcatgttctgacagtcaacatgtttttataccatttgtttttgacacttttggtttcct 219  Q
    |||||||||| ||||| | ||| |  |||||||||||||| |||||| ||| |||||||| ||||| |||||||| ||||||||||||  |||||||    
T  6618409 taaaagttgcgtcaaatagagtagttaaacatgagaaagcgtgttctcacaatcaacatgattttaaaccatttgcttttgacactttcagtttcct 6618313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 96 - 172
Target Start/End: Original strand, 11611199 - 11611275
Alignment:
Q  96 gggcttttacggtagggcagacagccctaaaagttgcatcaaacaaagtggccaaacatgagaaagcatgttctgac 172  Q
    ||||||||||| || |  ||||| ||||||||||||  ||||| |||||||||||| ||||||||||||||||||||    
T  11611199 gggcttttacgataagatagacatccctaaaagttgtgtcaaataaagtggccaaatatgagaaagcatgttctgac 11611275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 131 - 209
Target Start/End: Original strand, 10556283 - 10556361
Alignment:
Q  131 gcatcaaacaaagtggccaaacatgagaaagcatgttctgacagtcaacatgtttttataccatttgtttttgacactt 209  Q
    |||||||| ||||||| ||||||||||||| ||| |||||| | ||||||||||||||||  | |||| ||||||||||    
T  10556283 gcatcaaagaaagtggtcaaacatgagaaaacatattctgaaaatcaacatgtttttatataaattgtatttgacactt 10556361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 227 - 293
Target Start/End: Complemental strand, 38815292 - 38815226
Alignment:
Q  227 agttcaaagggtcatgcacaacaatgtcataactccaaggtctgtgaatgttgtgtttacgaagatt 293  Q
    |||||||||||||||||| | |||||||||  |||| |||||  |||||||||||||||||| ||||    
T  38815292 agttcaaagggtcatgcatagcaatgtcatgtctcctaggtccatgaatgttgtgtttacgaggatt 38815226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 114 - 198
Target Start/End: Complemental strand, 4700002 - 4699919
Alignment:
Q  114 agacagccctaaaagttgcatcaaacaaagtggccaaacatgagaaagcatgttctgacagtcaacatgtttttataccatttgt 198  Q
    ||||| |||| |||||||  |||| ||||||||||||||||||  |||| |||||| ||| | |||||||||||| |||||||||    
T  4700002 agacaaccctcaaagttgtgtcaagcaaagtggccaaacatga-taagcgtgttctcacaattaacatgtttttacaccatttgt 4699919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 181 - 220
Target Start/End: Complemental strand, 43824056 - 43824017
Alignment:
Q  181 tgtttttataccatttgtttttgacacttttggtttcctt 220  Q
    ||||||||||||||||| ||||||||||||||| ||||||    
T  43824056 tgtttttataccatttgcttttgacacttttggcttcctt 43824017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 140 - 202
Target Start/End: Original strand, 39671170 - 39671232
Alignment:
Q  140 aaagtggccaaacatgagaaagcatgttctgacagtcaacatgtttttataccatttgttttt 202  Q
    |||||||||||||  |||||||| |||| ||||| | ||||||||||||||| |||| |||||    
T  39671170 aaagtggccaaaccagagaaagcgtgttttgacaattaacatgtttttatacaatttattttt 39671232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 97 - 154
Target Start/End: Complemental strand, 8390291 - 8390234
Alignment:
Q  97 ggcttttacggtagggcagacagccctaaaagttgcatcaaacaaagtggccaaacat 154  Q
    |||||||| | ||||||||||| |||||||| |||| | |||||||||| ||||||||    
T  8390291 ggcttttatgatagggcagacaaccctaaaaattgcgtaaaacaaagtgaccaaacat 8390234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 84; Significance: 2e-39; HSPs: 33)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 69 - 212
Target Start/End: Original strand, 28517215 - 28517358
Alignment:
Q  69 tttcaccactcatgggattaggggttggggcttttacggtagggcagacagccctaaaagttgcatcaaacaaagtggccaaacatgagaaagcatgttc 168  Q
    ||||||||||  |||| |||||||| ||||||||||| ||||| |||||| ||||||||| ||| |||| |||||||||||||||||||||||| ||||     
T  28517215 tttcaccacttgtgggtttaggggtgggggcttttacagtaggacagacaaccctaaaagctgcgtcaagcaaagtggccaaacatgagaaagcgtgttt 28517314  T
Q  169 tgacagtcaacatgtttttataccatttgtttttgacacttttg 212  Q
     |||| ||||||||||||||||||||||| ||||||||||||||    
T  28517315 agacaatcaacatgtttttataccatttgcttttgacacttttg 28517358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 80; E-Value: 4e-37
Query Start/End: Original strand, 12 - 210
Target Start/End: Complemental strand, 4501495 - 4501296
Alignment:
Q  12 gatgttatggtgtacaaatgggtaagaggaaa-cactcatttgtagacttgaccagtatttcaccactcatgggattaggggttggggcttttacggtag 110  Q
    |||||||||||||||  || |||| ||||||| ||  ||| ||||||||||||  |  ||||||||||  |||||||||| || ||| ||||||| ||||    
T  4501495 gatgttatggtgtacggataggtaggaggaaaacatgcatgtgtagacttgactggggtttcaccacttgtgggattaggtgtcgggccttttaccgtag 4501396  T
Q  111 ggcagacagccctaaaagttgcatcaaacaaagtggccaaacatgagaaagcatgttctgacagtcaacatgtttttataccatttgtttttgacacttt 210  Q
    | || ||| ||||||||| ||| ||||||||||||||||||||||||||||| |||||||||| |||||||| |||||||  ||||| ||||||||||||    
T  4501395 gacaaacaaccctaaaagctgcgtcaaacaaagtggccaaacatgagaaagcgtgttctgacaatcaacatgcttttatataatttgcttttgacacttt 4501296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 69 - 219
Target Start/End: Original strand, 21326766 - 21326916
Alignment:
Q  69 tttcaccactcatgggattaggggttggggcttttacggtagggcagacagccctaaaagttgcatcaaacaaagtggccaaacatgagaaagcatgttc 168  Q
    ||||||||||  |||||||||| || ||  ||||||| ||||| || |||||||||||||  || |||| |||||||||||||||||||||||| |||||    
T  21326766 tttcaccacttgtgggattaggtgtcggaccttttaccgtaggacaaacagccctaaaagccgcgtcaagcaaagtggccaaacatgagaaagcgtgttc 21326865  T
Q  169 tgacagtcaacatgtttttataccatttgtttttgacacttttggtttcct 219  Q
    ||||| |||||||| |||||||||||||| |||||||||||| | ||||||    
T  21326866 tgacaatcaacatgcttttataccatttgcttttgacactttcgatttcct 21326916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 12 - 218
Target Start/End: Original strand, 45613712 - 45613919
Alignment:
Q  12 gatgttatggtgtacaaatgggtaagaggaaa-cactcatttgtagacttgaccagtatttcaccactcatgggattaggggttggggcttttacggtag 110  Q
    ||||||||| ||||| |||||||| ||||||| ||  ||| ||||||||||||  |  ||||||||||  | |||||||| || ||| ||||| | ||||    
T  45613712 gatgttatgatgtacgaatgggtaggaggaaaacatgcatgtgtagacttgactggggtttcaccacttgtaggattaggtgtcgggcctttttccgtag 45613811  T
Q  111 ggcagacagccctaaaagttgcatcaaacaaagtggccaaacatgagaaagcatgttctgacagtcaacatgtttttataccatttgtttttgacacttt 210  Q
    | |||||| ||||||||||||| ||||  || ||| ||||||| | |||||  |||||||||| ||||||||||||||||||||||| ||||||||||||    
T  45613812 gacagacaaccctaaaagttgcgtcaagtaaggtgaccaaacacgggaaagtgtgttctgacaatcaacatgtttttataccatttgattttgacacttt 45613911  T
Q  211 tggtttcc 218  Q
     |||||||    
T  45613912 cggtttcc 45613919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 81 - 219
Target Start/End: Complemental strand, 32584768 - 32584630
Alignment:
Q  81 tgggattaggggttggggcttttacggtagggcagacagccctaaaagttgcatcaaacaaagtggccaaacatgagaaagcatgttctgacagtcaaca 180  Q
    ||||||||||||| |||| |||||||||||| ||  || |||||||| |||||||||||||||||| ||||||||||||| | |||||||||| |||| |    
T  32584768 tgggattaggggtcggggattttacggtaggacatgcaaccctaaaaattgcatcaaacaaagtggtcaaacatgagaaaacgtgttctgacaatcaaga 32584669  T
Q  181 tgtttttataccatttgtttttgacacttttggtttcct 219  Q
    || ||||| |||||||| ||||||||||||  |||||||    
T  32584668 tgcttttacaccatttgcttttgacactttatgtttcct 32584630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 8 - 219
Target Start/End: Complemental strand, 43857115 - 43856903
Alignment:
Q  8 tgcagatgttatggtgtacaaatgggtaagaggaaa-cactcatttgtagacttgaccagtatttcaccactcatgggattaggggttggggcttttacg 106  Q
    |||||||||||||||||||  ||||||| ||| ||| ||  |||  || ||||||||  |  ||||||||||  ||||||||||||| |||||||||||     
T  43857115 tgcagatgttatggtgtacggatgggtaggagaaaaacatacatgcgtggacttgacgggggtttcaccacttgtgggattaggggtcggggcttttaca 43857016  T
Q  107 gtagggcagacagccctaaaagttgcatcaaacaaagtggccaaacatgagaaagcatgttctgacagtcaacatgtttttataccatttgtttttgaca 206  Q
    ||||| |||||| |  |||||| ||| |||| ||||||||| | |||||||||||| |||| ||||| ||||||||  ||||||| ||||| ||||||||    
T  43857015 gtaggacagacaacattaaaagatgcgtcaatcaaagtggctagacatgagaaagcgtgttttgacaatcaacatgcgtttatacaatttgcttttgaca 43856916  T
Q  207 cttttggtttcct 219  Q
     ||||||||||||    
T  43856915 tttttggtttcct 43856903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 52 - 216
Target Start/End: Complemental strand, 983145 - 982981
Alignment:
Q  52 tgtagacttgaccagtatttcaccactcatgggattaggggttggggcttttacggtagggcagacagccctaaaagttgcatcaaacaaagtggccaaa 151  Q
    |||||||||||| ||  ||| ||||||  |||||||||| || ||  ||||||  ||||| ||| ||||| |||||| ||| |||| |||||||||||||    
T  983145 tgtagacttgactagggtttaaccacttgtgggattaggtgtgggaccttttattgtaggacaggcagccataaaagctgcgtcaagcaaagtggccaaa 983046  T
Q  152 catgagaaagcatgttctgacagtcaacatgtttttataccatttgtttttgacacttttggttt 216  Q
    ||||||||| | |||||||||| |||||||| |||||||||||||| |||||| ||||| |||||    
T  983045 catgagaaatcgtgttctgacaatcaacatgcttttataccatttgcttttgatactttcggttt 982981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 12 - 210
Target Start/End: Complemental strand, 5825508 - 5825311
Alignment:
Q  12 gatgttatggtgtacaaatgggtaagaggaaa-cactcatttgtagacttgaccagtatttcaccactcatgggattaggggttggggcttttacggtag 110  Q
    ||||||||||||||| |||||||  ||||||| ||  ||| ||| ||||||||  |  ||||||||||  |||| |||||||| | ||||||||||| ||    
T  5825508 gatgttatggtgtacgaatgggttggaggaaaacatgcatgtgtggacttgactggggtttcaccacttgtgggtttaggggtcgaggcttttacggcag 5825409  T
Q  111 ggcagacagccctaaaagttgcatcaaacaaagtggccaaacatgagaaagcatgttctgacagtcaacatgtttttataccatttgtttttgacacttt 210  Q
    | |||  ||||||||||| |||||||| |||||||  ||||||||| || || |||| ||||| ||||||||||||||||||||||  ||||||||||||    
T  5825408 gacaggaagccctaaaagctgcatcaagcaaagtg--caaacatgacaatgcgtgttatgacaatcaacatgtttttataccatttacttttgacacttt 5825311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 107 - 219
Target Start/End: Complemental strand, 19277434 - 19277322
Alignment:
Q  107 gtagggcagacagccctaaaagttgcatcaaacaaagtggccaaacatgagaaagcatgttctgacagtcaacatgtttttataccatttgtttttgaca 206  Q
    ||||| ||| ||| |||||||| ||| |||| |||||| ||||||||||||||||| |||||||||| |||||||| |||||||||||||| ||||||||    
T  19277434 gtaggacaggcagtcctaaaagctgcgtcaagcaaagtagccaaacatgagaaagcgtgttctgacaatcaacatgcttttataccatttgcttttgaca 19277335  T
Q  207 cttttggtttcct 219  Q
    |||| ||||||||    
T  19277334 ctttcggtttcct 19277322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 68 - 219
Target Start/End: Complemental strand, 27521651 - 27521500
Alignment:
Q  68 atttcaccactcatgggattaggggttggggcttttacggtagggcagacagccctaaaagttgcatcaaacaaagtggccaaacatgagaaagcatgtt 167  Q
    ||||||||| |  |||||||||| || ||| ||||||||||||| ||  || || |||||||||| | ||||||||||| ||||||||||||| | ||||    
T  27521651 atttcaccatttgtgggattaggtgtcgggccttttacggtaggacatgcacccttaaaagttgcgttaaacaaagtggtcaaacatgagaaaacgtgtt 27521552  T
Q  168 ctgacagtcaacatgtttttataccatttgtttttgacacttttggtttcct 219  Q
    |||||| ||||||||  ||||||| ||||  |||||||||||||||||||||    
T  27521551 ctgacaatcaacatgcatttatacaatttacttttgacacttttggtttcct 27521500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 69 - 219
Target Start/End: Complemental strand, 2904544 - 2904394
Alignment:
Q  69 tttcaccactcatgggattaggggttggggcttttacggtagggcagacagccctaaaagttgcatcaaacaaagtggccaaacatgagaaagcatgttc 168  Q
    ||||||||||  || | ||||||| || ||| |||||||||||  |||||| |||||||||| | |||| |||| | | |||||||||||||||||||||    
T  2904544 tttcaccacttgtgaggttaggggatgaggcatttacggtaggatagacagtcctaaaagttacgtcaagcaaaatagtcaaacatgagaaagcatgttc 2904445  T
Q  169 tgacagtcaacatgtttttataccatttgtttttgacacttttggtttcct 219  Q
     |||| |||||||| ||||||| ||||||||| |||||  ||||| |||||    
T  2904444 cgacaatcaacatgattttatatcatttgtttgtgacatgtttggcttcct 2904394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 52 - 212
Target Start/End: Complemental strand, 3676836 - 3676675
Alignment:
Q  52 tgtagacttgaccagtatttcaccactcatgggattaggggttggggcttttacggtagggcagac-agccctaaaagttgcatcaaacaaagtggccaa 150  Q
    ||||||||||||  |  ||||||||||  |||||||||| || ||  ||||||| ||||| ||| | ||||||||||| ||| |||| |||||||| |||    
T  3676836 tgtagacttgactggggtttcaccacttgtgggattaggtgtcggtccttttaccgtaggacaggccagccctaaaagctgcgtcaagcaaagtggtcaa 3676737  T
Q  151 acatgagaaagcatgttctgacagtcaacatgtttttataccatttgtttttgacacttttg 212  Q
    |||| ||||||| |||||| ||  |||| ||| |||||||||||||| ||||||||||||||    
T  3676736 acatcagaaagcgtgttcttactatcaatatgcttttataccatttgcttttgacacttttg 3676675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 123 - 219
Target Start/End: Original strand, 30216040 - 30216136
Alignment:
Q  123 taaaagttgcatcaaacaaagtggccaaacatgagaaagcatgttctgacagtcaacatgtttttataccatttgtttttgacacttttggtttcct 219  Q
    |||||| ||| |||| |||| ||| |||| |||||||||| |||| ||||| ||||||||||||||||||||||| |||||||||||| ||||||||    
T  30216040 taaaagctgcgtcaagcaaaatggtcaaatatgagaaagcgtgttttgacaatcaacatgtttttataccatttgcttttgacactttcggtttcct 30216136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 84 - 219
Target Start/End: Complemental strand, 22198150 - 22198015
Alignment:
Q  84 gattaggggttggggcttttacggtagggcagacagccctaaaagttgcatcaaacaaagtggccaaacatgagaaagcatgttctgacagtcaacatgt 183  Q
    ||||||| || ||| |||||| |||||| |   ||||||||||||  || |||| ||||||| |||||||||||||||  |||||  ||| |||||||||    
T  22198150 gattaggtgtcgggccttttatggtaggacgcgcagccctaaaagcggcgtcaagcaaagtgaccaaacatgagaaagtgtgttccaacaatcaacatgt 22198051  T
Q  184 ttttataccatttgtttttgacacttttggtttcct 219  Q
    |||||||||||||| ||||| |||||| ||||||||    
T  22198050 ttttataccatttgcttttgtcactttcggtttcct 22198015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 84 - 219
Target Start/End: Original strand, 22239671 - 22239806
Alignment:
Q  84 gattaggggttggggcttttacggtagggcagacagccctaaaagttgcatcaaacaaagtggccaaacatgagaaagcatgttctgacagtcaacatgt 183  Q
    ||||||| || ||| |||||| |||||| |   ||||||||||||  || |||| ||||||| |||||||||||||||  |||||  ||| |||||||||    
T  22239671 gattaggtgtcgggccttttatggtaggacgcgcagccctaaaagcggcgtcaagcaaagtgaccaaacatgagaaagtgtgttccaacaatcaacatgt 22239770  T
Q  184 ttttataccatttgtttttgacacttttggtttcct 219  Q
    |||||||||||||| ||||| |||||| ||||||||    
T  22239771 ttttataccatttgcttttgtcactttcggtttcct 22239806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 81 - 219
Target Start/End: Complemental strand, 24527756 - 24527618
Alignment:
Q  81 tgggattaggggttggggcttttacggtagggcagacagccctaaaagttgcatcaaacaaagtggccaaacatgagaaagcatgttctgacagtcaaca 180  Q
    |||||||||| || ||  ||||||| ||||| ||| ||||||||||||  |  ||||  |||||||  |||||||||||| | |||||||||| ||||||    
T  24527756 tgggattaggtgtcggaccttttaccgtaggacaggcagccctaaaagcagtgtcaagtaaagtgggaaaacatgagaaaacgtgttctgacaatcaaca 24527657  T
Q  181 tgtttttataccatttgtttttgacacttttggtttcct 219  Q
    || |||||||||||||| ||||||||||||  |||||||    
T  24527656 tgcttttataccatttgcttttgacactttcagtttcct 24527618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 134 - 219
Target Start/End: Original strand, 42295177 - 42295262
Alignment:
Q  134 tcaaacaaagtggccaaacatgagaaagcatgttctgacagtcaacatgtttttataccatttgtttttgacacttttggtttcct 219  Q
    |||| |||| ||||||||||| ||||||| | |||||||| |||||||||||||||||||||||||||| | ||||| ||||||||    
T  42295177 tcaagcaaaatggccaaacataagaaagcttcttctgacaatcaacatgtttttataccatttgttttttatactttcggtttcct 42295262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 119 - 215
Target Start/End: Complemental strand, 10905246 - 10905151
Alignment:
Q  119 gccctaaaagttgcatcaaacaaagtggccaaacatgagaaagcatgttctgacagtcaacatgtttttataccatttgtttttgacacttttggtt 215  Q
    |||||||||| ||| |||| ||||||||||||| ||||||||   |||||||||| ||||||||  ||||||||||||| |||||||||||||||||    
T  10905246 gccctaaaagctgcgtcaagcaaagtggccaaatatgagaaaaagtgttctgacactcaacatg-ctttataccatttgcttttgacacttttggtt 10905151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 139 - 210
Target Start/End: Original strand, 40726478 - 40726549
Alignment:
Q  139 caaagtggccaaacatgagaaagcatgttctgacagtcaacatgtttttataccatttgtttttgacacttt 210  Q
    |||||||||||||||| | |||   |||||||||| ||||||||||||||||||||||||||||||||||||    
T  40726478 caaagtggccaaacataataaaatgtgttctgacaatcaacatgtttttataccatttgtttttgacacttt 40726549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 75 - 211
Target Start/End: Original strand, 9281066 - 9281201
Alignment:
Q  75 cactcatgggattaggggttggggcttttacggtagggcagacagccctaaaagttgcatcaaacaaagtggccaaacatgagaaagcatgttctgacag 174  Q
    ||||| |||||||| | | | ||| |||||| ||||| |||||| ||||||||| |||||||| |||| | || |||||||||||||| |||||| |||     
T  9281066 cactcgtgggattatgtgatagggtttttacagtaggacagacaaccctaaaagctgcatcaagcaaactagc-aaacatgagaaagcgtgttctaacaa 9281164  T
Q  175 tcaacatgtttttataccatttgtttttgacactttt 211  Q
    |||||||| |||||||| |||||  ||||||| ||||    
T  9281165 tcaacatgcttttatactatttggatttgacattttt 9281201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 75 - 211
Target Start/End: Original strand, 9292037 - 9292172
Alignment:
Q  75 cactcatgggattaggggttggggcttttacggtagggcagacagccctaaaagttgcatcaaacaaagtggccaaacatgagaaagcatgttctgacag 174  Q
    ||||| |||||||| | | | ||| |||||| ||||| |||||| ||||||||| |||||||| |||| | || |||||||||||||| |||||| |||     
T  9292037 cactcgtgggattatgtgatagggtttttacagtaggacagacaaccctaaaagctgcatcaagcaaactagc-aaacatgagaaagcgtgttctaacaa 9292135  T
Q  175 tcaacatgtttttataccatttgtttttgacactttt 211  Q
    |||||||| |||||||| |||||  ||||||| ||||    
T  9292136 tcaacatgcttttatactatttggatttgacattttt 9292172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 81 - 169
Target Start/End: Original strand, 33202405 - 33202493
Alignment:
Q  81 tgggattaggggttggggcttttacggtagggcagacagccctaaaagttgcatcaaacaaagtggccaaacatgagaaagcatgttct 169  Q
    ||||||||||||||||||||||||| |||||  ||| ||||||  ||||||| || ||| ||||||||||||||||||| || ||||||    
T  33202405 tgggattaggggttggggcttttacagtaggatagaaagccctggaagttgcgtccaactaagtggccaaacatgagaacgcgtgttct 33202493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 99 - 219
Target Start/End: Original strand, 34067820 - 34067939
Alignment:
Q  99 cttttacggtagggcagacagccctaaaagttgcatcaaacaaagtggccaaacatgagaaagcatgttctgacagtcaacatgtttttataccatttgt 198  Q
    ||||||| || || |||||||||||  |||| || |||| | ||||| |||||||||||||||  |||| ||||| ||||||| ||| ||| ||||||||    
T  34067820 cttttactgtgggacagacagccctcgaagtcgcttcaagccaagtgaccaaacatgagaaagtgtgttttgacaatcaacat-tttctatgccatttgt 34067918  T
Q  199 ttttgacacttttggtttcct 219  Q
     ||||||||||||||||||||    
T  34067919 atttgacacttttggtttcct 34067939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 227 - 288
Target Start/End: Complemental strand, 43856872 - 43856811
Alignment:
Q  227 agttcaaagggtcatgcacaacaatgtcataactccaaggtctgtgaatgttgtgtttacga 288  Q
    |||||||||||||||||||||||||||||| ||||| |||||  |||||||| |||||||||    
T  43856872 agttcaaagggtcatgcacaacaatgtcatgactcctaggtccatgaatgttatgtttacga 43856811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 81 - 204
Target Start/End: Original strand, 25186876 - 25186999
Alignment:
Q  81 tgggattaggggttggggcttttacggtagggcagacagccctaaaagttgcatcaaacaaagtggccaaacatgagaaagcatgttctgacagtcaaca 180  Q
    |||||||||| || ||  ||||||| ||||| || | | ||||||||||||  ||||  ||||||| | ||||||||||||| ||||| || | ||||||    
T  25186876 tgggattaggtgtcggaccttttaccgtaggacataaaaccctaaaagttgtgtcaagtaaagtggtctaacatgagaaagcgtgttccgataatcaaca 25186975  T
Q  181 tgtttttataccatttgtttttga 204  Q
    ||||||| ||||||||| ||||||    
T  25186976 tgtttttctaccatttgcttttga 25186999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 81 - 210
Target Start/End: Complemental strand, 34772946 - 34772819
Alignment:
Q  81 tgggattaggggttggggcttttacggtagggcagacagccctaaaagttgcatcaaacaaagtggccaaacatgagaaagcatgttctgacagtcaaca 180  Q
    |||||||| | ||||||  |||||||||| |  || |||| ||||||||||  |||| |||||| |||||| |||||||||  ||||| |||| | || |    
T  34772946 tgggattatgtgttgggctttttacggtatgataggcagctctaaaagttg--tcaatcaaagtagccaaatatgagaaagtgtgttcggacaattaata 34772849  T
Q  181 tgtttttataccatttgtttttgacacttt 210  Q
    ||||||||||||||||| |||||| |||||    
T  34772848 tgtttttataccatttgcttttgaaacttt 34772819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 99 - 167
Target Start/End: Complemental strand, 1249735 - 1249667
Alignment:
Q  99 cttttacggtagggcagacagccctaaaagttgcatcaaacaaagtggccaaacatgagaaagcatgtt 167  Q
    |||||||||||||  ||||||||||||||  ||| ||||| ||||||| ||||||||||||||| ||||    
T  1249735 cttttacggtaggatagacagccctaaaacctgcgtcaaataaagtggtcaaacatgagaaagcgtgtt 1249667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 11 - 212
Target Start/End: Complemental strand, 38839564 - 38839360
Alignment:
Q  11 agatgttatggtgtacaaatgggtaagaggaaacactcatttgtagacttgaccagtatttcaccactcatgggattaggggttggggcttttacggtag 110  Q
    ||||||||||||||||  ||| ||||||| |||||  ||| ||| ||||||||    |||||| || |  ||||||| ||||| | | ||||||||| ||    
T  38839564 agatgttatggtgtacggatgtgtaagagaaaacatgcatgtgtggacttgactgagatttcatcattg-tgggatttggggtcgtgtcttttacggaag 38839466  T
Q  111 ggcagacagccctaaaagttgcatcaaacaaagtggccaaacatgagaaagcatgttctgacagtcaa----catgtttttataccatttgtttttgaca 206  Q
      |||||| | ||||||||||| | ||| ||| | | |||||||||||||||||||| || || ||||    ||||||||||||  ||||| ||||||||    
T  38839465 aacagacaactctaaaagttgcgtaaaataaaatcgtcaaacatgagaaagcatgttatgtcaatcaacatgcatgtttttatataatttgcttttgaca 38839366  T
Q  207 cttttg 212  Q
    ||||||    
T  38839365 cttttg 38839360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 225 - 288
Target Start/End: Original strand, 30216165 - 30216228
Alignment:
Q  225 aaagttcaaagggtcatgcacaacaatgtcataactccaaggtctgtgaatgttgtgtttacga 288  Q
    |||||||||| ||||||||| | |||||||||| |||| |||||| ||||||||||||| ||||    
T  30216165 aaagttcaaatggtcatgcatagcaatgtcatatctcctaggtctatgaatgttgtgttcacga 30216228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 227 - 293
Target Start/End: Complemental strand, 27521469 - 27521403
Alignment:
Q  227 agttcaaagggtcatgcacaacaatgtcataactccaaggtctgtgaatgttgtgtttacgaagatt 293  Q
    |||||||| ||||||||| |||||||||||  |||| | |||| |||||||||||||||||| ||||    
T  27521469 agttcaaaaggtcatgcataacaatgtcatgtctcctaagtctatgaatgttgtgtttacgaggatt 27521403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 134 - 206
Target Start/End: Complemental strand, 43383283 - 43383211
Alignment:
Q  134 tcaaacaaagtggccaaacatgagaaagcatgttctgacagtcaacatgtttttataccatttgtttttgaca 206  Q
    ||||| ||||||||||| |||||||||||||||||   || |||||||| |||||| |||||| | |||||||    
T  43383283 tcaaataaagtggccaaccatgagaaagcatgttccagcaatcaacatgcttttatgccatttatgtttgaca 43383211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 168 - 216
Target Start/End: Complemental strand, 48539261 - 48539213
Alignment:
Q  168 ctgacagtcaacatgtttttataccatttgtttttgacacttttggttt 216  Q
    |||||| |||||||| |||||||||||||| |||||||||||| |||||    
T  48539261 ctgacaatcaacatgcttttataccatttgcttttgacactttcggttt 48539213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 227 - 293
Target Start/End: Original strand, 45613951 - 45614017
Alignment:
Q  227 agttcaaagggtcatgcacaacaatgtcataactccaaggtctgtgaatgttgtgtttacgaagatt 293  Q
    |||||||| | ||||||| |||||||||| | |||| |||||  |||||||||||||||||| ||||    
T  45613951 agttcaaaagttcatgcataacaatgtcaaatctcctaggtccatgaatgttgtgtttacgaggatt 45614017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 78; Significance: 6e-36; HSPs: 28)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 78; E-Value: 6e-36
Query Start/End: Original strand, 52 - 217
Target Start/End: Complemental strand, 44198963 - 44198798
Alignment:
Q  52 tgtagacttgaccagtatttcaccactcatgggattaggggttggggcttttacggtagggcagacagccctaaaagttgcatcaaacaaagtggccaaa 151  Q
    ||||||||||||  |  ||||||||||  |||||||||| || ||  ||||||| ||||| ||| |||| ||||||||||| |||| |||||||||||||    
T  44198963 tgtagacttgactggggtttcaccacttgtgggattaggtgtcggaccttttaccgtaggtcaggcagctctaaaagttgcgtcaagcaaagtggccaaa 44198864  T
Q  152 catgagaaagcatgttctgacagtcaacatgtttttataccatttgtttttgacacttttggtttc 217  Q
    ||||||||||| |||||||| | |||||||| |||||||||||||| |||||||||||| ||||||    
T  44198863 catgagaaagcgtgttctgagaatcaacatgcttttataccatttgcttttgacactttcggtttc 44198798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 73; E-Value: 6e-33
Query Start/End: Original strand, 76 - 212
Target Start/End: Original strand, 46940705 - 46940841
Alignment:
Q  76 actcatgggattaggggttggggcttttacggtagggcagacagccctaaaagttgcatcaaacaaagtggccaaacatgagaaagcatgttctgacagt 175  Q
    |||| ||||||||||||| | || ||||| |||||| |||||| | ||||||| ||| |||| |||||||||||||||| ||||| ||||||| |||| |    
T  46940705 actcgtgggattaggggtcgaggattttatggtaggacagacaactctaaaagatgcgtcaagcaaagtggccaaacattagaaaacatgttccgacaat 46940804  T
Q  176 caacatgtttttataccatttgtttttgacacttttg 212  Q
    ||||||| |||||||||||||||||||||||||||||    
T  46940805 caacatgcttttataccatttgtttttgacacttttg 46940841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 13 - 219
Target Start/End: Complemental strand, 7901094 - 7900887
Alignment:
Q  13 atgttatggtgtacaaatgggtaagaggaaa-cactcatttgtagacttgaccagtatttcaccactcatgggattaggggttggggcttttacggtagg 111  Q
    ||||||||||||| | ||| ||| ||||||| ||  ||| ||| ||||||||  |  ||||||||||  ||||||||||||||||| |||||||||||||    
T  7901094 atgttatggtgtatagatgtgtaggaggaaaacatgcatgtgtggacttgactggggtttcaccacttgtgggattaggggttgggtcttttacggtagg 7900995  T
Q  112 gcagacagccctaaaagttgcatcaaacaaagtggccaaacatgagaaagcatgttctgacagtcaacatgtttttataccatttgtttttgacactttt 211  Q
     | || | ||||||||  ||| |||| |||| | ||| ||||||||||||| | |||||||| |||||||| |||||||||||||||||||||||||||     
T  7900994 acggatatccctaaaaactgcgtcaagcaaaatagccgaacatgagaaagcgttttctgacaatcaacatgcttttataccatttgtttttgacactttc 7900895  T
Q  212 ggtttcct 219  Q
    || |||||    
T  7900894 ggcttcct 7900887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 81 - 219
Target Start/End: Original strand, 39583169 - 39583307
Alignment:
Q  81 tgggattaggggttggggcttttacggtagggcagacagccctaaaagttgcatcaaacaaagtggccaaacatgagaaagcatgttctgacagtcaaca 180  Q
    |||||||| |||| ||| | |||| ||||||  || |||||||||||| ||| |||| |||||||||||||||||||||||| |||||||||| ||||||    
T  39583169 tgggattaagggtcgggccatttatggtaggataggcagccctaaaagctgcgtcaagcaaagtggccaaacatgagaaagcgtgttctgacaatcaaca 39583268  T
Q  181 tgtttttataccatttgtttttgacacttttggtttcct 219  Q
    || ||||||| |||||||||| |||||||| ||||||||    
T  39583269 tgcttttatatcatttgttttcgacactttcggtttcct 39583307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 6 - 219
Target Start/End: Complemental strand, 53785952 - 53785738
Alignment:
Q  6 catgcagatgttatggtgtacaaatgggtaagaggaaa-cactcatttgtagacttgaccagtatttcaccactcatgggattaggggttggggctttta 104  Q
    ||||| |||||| ||||||||  ||||||| ||||||| ||  ||| ||||||||||||  |  ||||||||||  |||||||||| || ||| ||||||    
T  53785952 catgcggatgttttggtgtacggatgggtaggaggaaaacatgcatgtgtagacttgactggggtttcaccactagtgggattaggtgtcgggcctttta 53785853  T
Q  105 cggtagggcagacagccctaaaagttgcatcaaacaaagtggccaaacatgagaaagcatgttctgacagtcaacatgtttttataccatttgtttttga 204  Q
    | |||||  || ||||||| ||||  || ||||  || ||||||||||| |||||||| |||||||||| |||||||| |||||||||||||| ||||||    
T  53785852 ccgtaggataggcagcccttaaagccgcgtcaagtaaggtggccaaacacgagaaagcgtgttctgacaatcaacatgcttttataccatttgcttttga 53785753  T
Q  205 cacttttggtttcct 219  Q
    |||||| ||||||||    
T  53785752 cactttcggtttcct 53785738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 6 - 219
Target Start/End: Complemental strand, 49018206 - 49017992
Alignment:
Q  6 catgcagatgttatggtgtacaaatgggtaagaggaaa-cactcatttgtagacttgaccagtatttcaccactcatgggattaggggttggggctttta 104  Q
    |||||||||||||||||||||  || |||| ||||||| ||  ||| |||| |||||||  |  ||||||||||  ||| |||||| || | | ||||||    
T  49018206 catgcagatgttatggtgtacggattggtacgaggaaaacatgcatgtgtaaacttgactggagtttcaccacttgtggaattaggtgtcgagcctttta 49018107  T
Q  105 cggtagggcagacagccctaaaagttgcatcaaacaaagtggccaaacatgagaaagcatgttctgacagtcaacatgtttttataccatttgtttttga 204  Q
    ||||||| ||  || |||| |||||| | | |||||||||| |||||||||||||||  |||||| ||| |||||||||||||||||||||| ||||| |    
T  49018106 cggtaggacaagcaaccctgaaagttacgtaaaacaaagtgaccaaacatgagaaagtgtgttctaacaatcaacatgtttttataccatttttttttta 49018007  T
Q  205 cacttttggtttcct 219  Q
    |||||| ||||||||    
T  49018006 cactttcggtttcct 49017992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 113 - 217
Target Start/End: Original strand, 37132971 - 37133075
Alignment:
Q  113 cagacagccctaaaagttgcatcaaacaaagtggccaaacatgagaaagcatgttctgacagtcaacatgtttttataccatttgtttttgacacttttg 212  Q
    |||||||||||||||| | | |||| ||||||||  |||||||||||||| |||||||||| |||||||||||||||||||||||||||| ||||||| |    
T  37132971 cagacagccctaaaagctacgtcaagcaaagtggttaaacatgagaaagcgtgttctgacaatcaacatgtttttataccatttgttttttacactttcg 37133070  T
Q  213 gtttc 217  Q
    |||||    
T  37133071 gtttc 37133075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 69 - 219
Target Start/End: Original strand, 52741439 - 52741590
Alignment:
Q  69 tttcaccactcatgggattaggggttggggcttttacggtagggcagacagccctaaaa-gttgcatcaaacaaagtggccaaacatgagaaagcatgtt 167  Q
    ||||||||||  |||||||||  || ||  ||||||  ||||| ||| ||||||||||| | ||  ||||||||| || |||||||||||||||| ||||    
T  52741439 tttcaccacttgtgggattagatgtaggaccttttattgtaggacaggcagccctaaaaagctgagtcaaacaaattgaccaaacatgagaaagcgtgtt 52741538  T
Q  168 ctgacagtcaacatgtttttataccatttgtttttgacacttttggtttcct 219  Q
    |||||| |||||||| |||||||||||||| |||||||||||||||||||||    
T  52741539 ctgacaatcaacatgcttttataccatttgcttttgacacttttggtttcct 52741590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 61; E-Value: 9e-26
Query Start/End: Original strand, 95 - 219
Target Start/End: Complemental strand, 26772911 - 26772787
Alignment:
Q  95 ggggcttttacggtagggcagacagccctaaaagttgcatcaaacaaagtggccaaacatgagaaagcatgttctgacagtcaacatgtttttataccat 194  Q
    ||||| ||||| ||||| ||  || ||||||||||||  |||| |||||||||||||||| ||||| | |||||||||| |||||||| |||||||||||    
T  26772911 ggggcatttacagtaggacatgcatccctaaaagttgtgtcaagcaaagtggccaaacatcagaaaacgtgttctgacaatcaacatgcttttataccat 26772812  T
Q  195 ttgtttttgacacttttggtttcct 219  Q
    ||| ||||||||||||||| |||||    
T  26772811 ttgcttttgacacttttggcttcct 26772787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 85 - 219
Target Start/End: Complemental strand, 4473224 - 4473090
Alignment:
Q  85 attaggggttggggcttttacggtagggcagacagccctaaaagttgcatcaaacaaagtggccaaacatgagaaagcatgttctgacagtcaacatgtt 184  Q
    ||||| |||||||| |||||||||||| |||| |||| ||||| |||| |||| ||||||| | |||||||| ||||| |||||| ||  |||| |||||    
T  4473224 attagtggttggggtttttacggtaggacagagagccttaaaaattgcgtcaagcaaagtgtcaaaacatgaaaaagcgtgttctaaccatcaatatgtt 4473125  T
Q  185 tttataccatttgtttttgacacttttggtttcct 219  Q
    ||||||| |||||||||||||||||| || |||||    
T  4473124 tttatactatttgtttttgacactttcggcttcct 4473090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 56; E-Value: 9e-23
Query Start/End: Original strand, 52 - 219
Target Start/End: Complemental strand, 13582705 - 13582539
Alignment:
Q  52 tgtagacttgaccagtatttcaccactcatgggattaggggttggggcttttacggtagggcagacagccctaaaagttgcatcaaacaaagtggccaaa 151  Q
    |||||||||||||    ||||| ||||  |||||||||| ||  || ||||||| ||||| ||  |||||||||||| ||| |||| |||||||  ||||    
T  13582705 tgtagacttgaccgaggtttcaacacttgtgggattaggtgtcaggccttttaccgtaggacaagcagccctaaaagctgcgtcaatcaaagtgatcaaa 13582606  T
Q  152 catgagaaagcatgttctgacagtcaacatgtttttataccatttgtttttgacacttttggtttcct 219  Q
    ||| ||||||  |||||||||| ||||| |||||||||||||||||||||| ||||||||| ||||||    
T  13582605 cataagaaagtgtgttctgacaatcaacgtgtttttataccatttgttttt-acacttttgatttcct 13582539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 69 - 196
Target Start/End: Complemental strand, 37992511 - 37992384
Alignment:
Q  69 tttcaccactcatgggattaggggttggggcttttacggtagggcagacagccctaaaagttgcatcaaacaaagtggccaaacatgagaaagcatgttc 168  Q
    ||||| |||||||| |||||| ||| | |  |||||||||||| || | ||||||  ||||||  |||||||||||| ||||||||||| ||||||||||    
T  37992511 tttcatcactcatgagattagaggtcgagatttttacggtaggacatatagccctgcaagttgtgtcaaacaaagtgaccaaacatgaggaagcatgttc 37992412  T
Q  169 tgacagtcaacatgtttttataccattt 196  Q
    ||||| |||||||| ||||||| |||||    
T  37992411 tgacaatcaacatgattttatatcattt 37992384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 98 - 219
Target Start/End: Complemental strand, 5338796 - 5338672
Alignment:
Q  98 gcttttacggtagggcagacagccctaaaagttgcatcaaacaaagtggccaaacatgagaaagcatgtt---ctgacagtcaacatgtttttataccat 194  Q
    |||||||||||||| |||| |||||||| |||||| ||||||||| | ||||||||||||||||   |||    |||||||||||||| |||||||| ||    
T  5338796 gcttttacggtaggacagaaagccctaagagttgcgtcaaacaaaattgccaaacatgagaaagtgcgttgcgttgacagtcaacatgcttttatacaat 5338697  T
Q  195 ttgtttttgacacttttggtttcct 219  Q
    ||| |||||||||||| || |||||    
T  5338696 ttgcttttgacactttcggcttcct 5338672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 148 - 213
Target Start/End: Original strand, 38670887 - 38670952
Alignment:
Q  148 caaacatgagaaagcatgttctgacagtcaacatgtttttataccatttgtttttgacacttttgg 213  Q
    ||||||||||||||| |||||||||| |||||||| |||||||| |||||||||||||||||||||    
T  38670887 caaacatgagaaagcgtgttctgacaatcaacatgcttttatacaatttgtttttgacacttttgg 38670952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 81 - 212
Target Start/End: Complemental strand, 38146223 - 38146092
Alignment:
Q  81 tgggattaggggttggggcttttacggtagggcagacagccctaaaagttgcatcaaacaaagtggccaaacatgagaaagcatgttctgacagtcaaca 180  Q
    ||||||||||||| || ||||| | |||||| ||  ||||||||||||  ||||||| |||||||| |||||  |||| | | |||| ||||| ||||||    
T  38146223 tgggattaggggtcggagctttgagggtaggacatgcagccctaaaagcggcatcaatcaaagtggtcaaacgcgagacaacgtgttttgacaatcaaca 38146124  T
Q  181 tgtttttataccatttgtttttgacacttttg 212  Q
    ||||||||||||||||   |||||||||||||    
T  38146123 tgtttttataccatttacatttgacacttttg 38146092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 142 - 219
Target Start/End: Complemental strand, 32546901 - 32546824
Alignment:
Q  142 agtggccaaacatgagaaagcatgttctgacagtcaacatgtttttataccatttgtttttgacacttttggtttcct 219  Q
    ||||||||||||||||||||| ||||| |||| |||||||  |||||||||||||| ||||||||||||  |||||||    
T  32546901 agtggccaaacatgagaaagcgtgttcggacaatcaacatacttttataccatttgcttttgacactttcagtttcct 32546824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 99 - 219
Target Start/End: Original strand, 3443270 - 3443390
Alignment:
Q  99 cttttacggtagggcagacagccctaaaagttgcatcaaacaaagtggccaaacatgagaaagcatgttctgacagtcaacatgtttttataccatttgt 198  Q
    |||||||| |||| |||| || |||||||||||| |||| |||| ||||||||||||| ||||  | |||| ||| |||||||| |||||||||||||      
T  3443270 cttttacgataggacagagagtcctaaaagttgcgtcaagcaaaatggccaaacatgaaaaagtgtattctaacaatcaacatgcttttataccattttc 3443369  T
Q  199 ttttgacacttttggtttcct 219  Q
    | ||||||||||  |||||||    
T  3443370 tgttgacactttcagtttcct 3443390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 99 - 219
Target Start/End: Original strand, 38978757 - 38978877
Alignment:
Q  99 cttttacggtagggcagacagccctaaaagttgcatcaaacaaagtggccaaacatgagaaagcatgttctgacagtcaacatgtttttataccatttgt 198  Q
    |||||||||||||  | ||| ||||||||||||  |||| |||| |||  | ||||| |||| | | || ||||| |||| |||||||||||| ||||||    
T  38978757 cttttacggtaggaaatacaaccctaaaagttgtgtcaagcaaattggttagacatgtgaaaacgtattttgacaatcaatatgtttttatactatttgt 38978856  T
Q  199 ttttgacacttttggtttcct 219  Q
    |||||||||||||||||||||    
T  38978857 ttttgacacttttggtttcct 38978877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 140 - 219
Target Start/End: Original strand, 7502010 - 7502090
Alignment:
Q  140 aaagtggccaaacatgagaaagcatgttctgacagtcaacatg-tttttataccatttgtttttgacacttttggtttcct 219  Q
    ||||||| ||||||||||||||| |||||  ||| |||||||| ||||||||||||||  |||||||| ||||||||||||    
T  7502010 aaagtggtcaaacatgagaaagcgtgttcgaacaatcaacatgttttttataccattttcttttgacatttttggtttcct 7502090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 125 - 212
Target Start/End: Original strand, 54508367 - 54508455
Alignment:
Q  125 aaagttgcatcaaacaaagtggccaaacatgagaaag-catgttctgacagtcaacatgtttttataccatttgtttttgacacttttg 212  Q
    |||||||| ||||||||| |||| ||||||||||||  | |||||||||| | |||||||||||||| |||||| |||||||| |||||    
T  54508367 aaagttgcgtcaaacaaaatggctaaacatgagaaaaacttgttctgacaattaacatgtttttatatcatttgcttttgacatttttg 54508455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 148 - 210
Target Start/End: Complemental strand, 51234716 - 51234654
Alignment:
Q  148 caaacatgagaaagcatgttctgacagtcaacatgtttttataccatttgtttttgacacttt 210  Q
    ||||||||| |||||||||| |||||  ||||||| ||||||||||||| |||||||||||||    
T  51234716 caaacatgaaaaagcatgttatgacaaccaacatgcttttataccatttatttttgacacttt 51234654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 125 - 196
Target Start/End: Complemental strand, 43123268 - 43123197
Alignment:
Q  125 aaagttgcatcaaacaaagtggccaaacatgagaaagcatgttctgacagtcaacatgtttttataccattt 196  Q
    ||||| ||||||| ||||||| | |||||||| |||| ||||||||||| |||||||||| |||||| ||||    
T  43123268 aaagtcgcatcaagcaaagtgtctaaacatgataaaggatgttctgacaatcaacatgttgttatactattt 43123197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 227 - 293
Target Start/End: Complemental strand, 13582508 - 13582442
Alignment:
Q  227 agttcaaagggtcatgcacaacaatgtcataactccaaggtctgtgaatgttgtgtttacgaagatt 293  Q
    |||||||| ||||||||| |||||||||||  |||| ||| |  |||||||||||||||||||||||    
T  13582508 agttcaaaaggtcatgcataacaatgtcatgtctcctaggaccatgaatgttgtgtttacgaagatt 13582442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 227 - 293
Target Start/End: Complemental strand, 38146054 - 38145988
Alignment:
Q  227 agttcaaagggtcatgcacaacaatgtcataactccaaggtctgtgaatgttgtgtttacgaagatt 293  Q
    |||||||||||||||||| |||||||||||  |||| |||||  |||| ||||||||||||| ||||    
T  38146054 agttcaaagggtcatgcataacaatgtcatgtctcctaggtccatgaacgttgtgtttacgatgatt 38145988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 153 - 210
Target Start/End: Original strand, 52411903 - 52411960
Alignment:
Q  153 atgagaaagcatgttctgacagtcaacatgtttttataccatttgtttttgacacttt 210  Q
    |||||| ||| |||||||||| |||||||| |||||| ||||||| ||||||||||||    
T  52411903 atgagagagcgtgttctgacaatcaacatgcttttattccatttgcttttgacacttt 52411960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 217 - 261
Target Start/End: Original strand, 7502109 - 7502153
Alignment:
Q  217 ccttctacaaagttcaaagggtcatgcacaacaatgtcataactc 261  Q
    ||||||||| |||| ||||||||||||||||||||||||| ||||    
T  7502109 ccttctacagagtttaaagggtcatgcacaacaatgtcatgactc 7502153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 226 - 294
Target Start/End: Original strand, 46320025 - 46320093
Alignment:
Q  226 aagttcaaagggtcatgcacaacaatgtcataactccaaggtctgtgaatgttgtgtttacgaagattt 294  Q
    |||||||||||||||  |||||| ||||||| ||| | |||||  ||||||| ||||||||||||||||    
T  46320025 aagttcaaagggtcacacacaacgatgtcatgacttctaggtccatgaatgtcgtgtttacgaagattt 46320093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 227 - 289
Target Start/End: Original strand, 46940882 - 46940944
Alignment:
Q  227 agttcaaagggtcatgcacaacaatgtcataactccaaggtctgtgaatgttgtgtttacgaa 289  Q
    |||||||||| |||||||| |||||||||| ||||  ||||   |||||||||||||||||||    
T  46940882 agttcaaaggatcatgcacgacaatgtcatgactcataggttcatgaatgttgtgtttacgaa 46940944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0490 (Bit Score: 76; Significance: 1e-34; HSPs: 1)
Name: scaffold0490
Description:

Target: scaffold0490; HSP #1
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 52 - 219
Target Start/End: Complemental strand, 6529 - 6363
Alignment:
Q  52 tgtagacttgaccagtatttcaccactcatgggattaggggttggggcttttacggtagggcagacagccctaaaagttgcatcaaacaaagtggccaaa 151  Q
    ||||||||||||  |  ||||||||||  ||||||||||| | ||  ||||||| ||||| |||||||||||||||||||| ||||  ||||||||||||    
T  6529 tgtagacttgactggggtttcaccacttgtgggattaggg-tcggaccttttaccgtaggacagacagccctaaaagttgcgtcaagtaaagtggccaaa 6431  T
Q  152 catgagaaagcatgttctgacagtcaacatgtttttataccatttgtttttgacacttttggtttcct 219  Q
    ||||||||||| |||||||||| |||||||| || ||||||||||| ||||||||||||  |||||||    
T  6430 catgagaaagcgtgttctgacaatcaacatgcttctataccatttgcttttgacactttcagtttcct 6363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0148 (Bit Score: 75; Significance: 4e-34; HSPs: 1)
Name: scaffold0148
Description:

Target: scaffold0148; HSP #1
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 69 - 219
Target Start/End: Complemental strand, 33428 - 33279
Alignment:
Q  69 tttcaccactcatgggattaggggttggggcttttacggtagggcagacagccctaaaagttgcatcaaacaaagtggccaaacatgagaaagcatgttc 168  Q
    |||||||||| ||||||||||| || ||| ||||||||||||| ||| || || |||| || ||||||| ||||||||| |||||||||||||| |||||    
T  33428 tttcaccacttatgggattaggtgtcgggccttttacggtaggacaggcaaccttaaa-gtggcatcaagcaaagtggctaaacatgagaaagcgtgttc 33330  T
Q  169 tgacagtcaacatgtttttataccatttgtttttgacacttttggtttcct 219  Q
    ||||| ||||||||||||||||||||||  |||||||| ||| ||||||||    
T  33329 tgacaatcaacatgtttttataccatttacttttgacattttcggtttcct 33279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 73; Significance: 6e-33; HSPs: 25)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 73; E-Value: 6e-33
Query Start/End: Original strand, 6 - 209
Target Start/End: Original strand, 23484802 - 23485006
Alignment:
Q  6 catgcagatgttatggtgtacaaatgggtaagaggaaa-cactcatttgtagacttgaccagtatttcaccactcatgggattaggggttggggctttta 104  Q
    |||||| |||||||| |||||  ||||||| ||||||| ||  ||| |||||||||||   |  ||||||||||  |||||||| | || ||| |||| |    
T  23484802 catgcatatgttatgatgtacggatgggtaggaggaaaacatgcatgtgtagacttgattggggtttcaccacttgtgggattaagtgtcgggcctttaa 23484901  T
Q  105 cggtagggcagacagccctaaaagttgcatcaaacaaagtggccaaacatgagaaagcatgttctgacagtcaacatgtttttataccatttgtttttga 204  Q
    |||| || ||   ||||||||||| | | |||||||||||||||||| ||||||||||||||||||||| |||||||| |||||||||||||||||||||    
T  23484902 cggtgggacaactagccctaaaagctacgtcaaacaaagtggccaaatatgagaaagcatgttctgacaatcaacatgcttttataccatttgtttttga 23485001  T
Q  205 cactt 209  Q
    |||||    
T  23485002 cactt 23485006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 73; E-Value: 6e-33
Query Start/End: Original strand, 12 - 219
Target Start/End: Original strand, 41867778 - 41867986
Alignment:
Q  12 gatgttatggtgtacaaatgggtaagaggaaa-cactcatttgtagacttgaccagtatttcaccactcatgggattaggggttggggcttttacggtag 110  Q
    |||||||||||||||| ||||||| | ||||| ||  | | ||||||||||||    ||||||| |||  |||||||||| || ||  ||||||  ||||    
T  41867778 gatgttatggtgtacagatgggtaggtggaaaacatgcttgtgtagacttgactgagatttcacgacttgtgggattaggtgtcggaccttttatcgtag 41867877  T
Q  111 ggcagacagccctaaaagttgcatcaaacaaagtggccaaacatgagaaagcatgttctgacagtcaacatgtttttataccatttgtttttgacacttt 210  Q
    | ||| ||||| |||||| ||| |||| |||||||| |||||||||||||||||||||||||| |||||||| |||||||||||||| ||||||||||||    
T  41867878 gacaggcagccttaaaagctgcgtcaagcaaagtggtcaaacatgagaaagcatgttctgacaatcaacatgcttttataccatttgcttttgacacttt 41867977  T
Q  211 tggtttcct 219  Q
     || |||||    
T  41867978 cgggttcct 41867986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 8 - 219
Target Start/End: Complemental strand, 2888753 - 2888545
Alignment:
Q  8 tgcagatgttatggtgtacaaatgggtaagagg-aaacactcatttgtagacttgaccagtatttcaccactcatgggattaggggttggggcttttacg 106  Q
    ||||||||||||||| |||| |||||||||||| |||||  ||| ||| ||||| ||  | ||||| ||||| || ||||||||||| ||     ||| |    
T  2888753 tgcagatgttatggtatacatatgggtaagaggtaaacatgcatgtgtggacttaactggaatttcgccacttataggattaggggtcgga----ttatg 2888658  T
Q  107 gtagggcagacagccctaaaagttgcatcaaacaaagtggccaaacatgagaaagcatgttctgacagtcaacatgtttttataccatttgtttttgaca 206  Q
    |||| ||| ||| ||||||||||||| || | |||||||| ||||||||||||| | |||||||||| ||||||||||||||||||||| |||| |||||    
T  2888657 gtagtgcaaacaaccctaaaagttgcgtctagcaaagtggacaaacatgagaaaacgtgttctgacaatcaacatgtttttataccattcgtttatgaca 2888558  T
Q  207 cttttggtttcct 219  Q
    ||||||| |||||    
T  2888557 cttttggcttcct 2888545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 69 - 210
Target Start/End: Complemental strand, 5532598 - 5532457
Alignment:
Q  69 tttcaccactcatgggattaggggttggggcttttacggtagggcagacagccctaaaagttgcatcaaacaaagtggccaaacatgagaaagcatgttc 168  Q
    ||||||||||||| ||||||||||| |||| |||||||||||| ||  |||||||||||| ||| |||| |||||||| ||||||||||||| | ||||     
T  5532598 tttcaccactcataggattaggggtcggggattttacggtaggacatgcagccctaaaagctgcgtcaagcaaagtggtcaaacatgagaaaacgtgttg 5532499  T
Q  169 tgacagtcaacatgtttttataccatttgtttttgacacttt 210  Q
    ||||| |||||||| |||||||| ||||  ||||||||||||    
T  5532498 tgacaatcaacatgcttttatactatttacttttgacacttt 5532457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 99 - 219
Target Start/End: Original strand, 4413024 - 4413144
Alignment:
Q  99 cttttacggtagggcagacagccctaaaagttgcatcaaacaaagtggccaaacatgagaaagcatgttctgacagtcaacatgtttttataccatttgt 198  Q
    ||||||| ||||| ||| || ||||||||| ||  |||| |||||||||||||||||||||||| |||||||||| |||||||| ||||||||||||||     
T  4413024 cttttaccgtaggacaggcaaccctaaaagctgtgtcaagcaaagtggccaaacatgagaaagcgtgttctgacaatcaacatgcttttataccatttgc 4413123  T
Q  199 ttttgacacttttggtttcct 219  Q
    |||||||||||| ||||||||    
T  4413124 ttttgacactttcggtttcct 4413144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 61; E-Value: 9e-26
Query Start/End: Original strand, 52 - 212
Target Start/End: Original strand, 9685326 - 9685486
Alignment:
Q  52 tgtagacttgaccagtatttcaccactcatgggattaggggttggggcttttacggtagggcagacagccctaaaagttgcatcaaacaaagtggccaaa 151  Q
    ||||||||||||  |  ||||||||||  |||||||||| ||  |  ||||||| |||||  || |||||||||||   || |||| |||||||||||||    
T  9685326 tgtagacttgactggggtttcaccacttgtgggattaggtgtcagaccttttaccgtaggataggcagccctaaaatccgcgtcaagcaaagtggccaaa 9685425  T
Q  152 catgagaaagcatgttctgacagtcaacatgtttttataccatttgtttttgacacttttg 212  Q
    ||||| ||||| |||||||||| |||||||| |||||||||||||| ||||||||||||||    
T  9685426 catgaaaaagcgtgttctgacaatcaacatgcttttataccatttgcttttgacacttttg 9685486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 6 - 216
Target Start/End: Original strand, 19161647 - 19161858
Alignment:
Q  6 catgcagatgttatggtgtacaaatgggtaagaggaaa-cactcatttgtagacttgaccagtatttcaccactcatgggattaggggttggggctttta 104  Q
    ||||| ||||||||| ||||   ||||||| ||||||| ||  ||| |||||||||||  ||  ||||||||||  || ||||||  ||  || ||||||    
T  19161647 catgcggatgttatgatgtaaggatgggtaggaggaaaacatgcatgtgtagacttgaatagggtttcaccacttgtgagattagatgtcaggcctttta 19161746  T
Q  105 cggtagggcagacagccctaaaagttgcatcaaacaaagtggccaaacatgagaaagcatgttctgacagtcaacatgtttttataccatttgtttttga 204  Q
     |||||| || ||| ||||||||  ||| ||||  ||||||| ||||||||| ||||| |||||||||| ||||||||||||||||||||||| ||||||    
T  19161747 tggtaggacatacatccctaaaatctgcgtcaagaaaagtgggcaaacatgaaaaagcgtgttctgacaatcaacatgtttttataccatttgcttttga 19161846  T
Q  205 cacttttggttt 216  Q
    |||||| |||||    
T  19161847 cactttcggttt 19161858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 81 - 219
Target Start/End: Complemental strand, 28225167 - 28225029
Alignment:
Q  81 tgggattaggggttggggcttttacggtagggcagacagccctaaaagttgcatcaaacaaagtggccaaacatgagaaagcatgttctgacagtcaaca 180  Q
    |||| ||||| ||| |||||||||||||||| || ||| |  |||||| ||| |||| ||||||| ||||| |||||||||| | |||||||| ||||||    
T  28225167 tgggcttaggagttagggcttttacggtaggacaaacaactttaaaagctgcgtcaagcaaagtgaccaaatatgagaaagcgtattctgacaatcaaca 28225068  T
Q  181 tgtttttataccatttgtttttgacacttttggtttcct 219  Q
    || |||||||||||||| |||||||||||| || |||||    
T  28225067 tgcttttataccatttgcttttgacactttcggcttcct 28225029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 69 - 178
Target Start/End: Complemental strand, 44686598 - 44686490
Alignment:
Q  69 tttcaccactcatgggattaggggttggggcttttacggtagggcagacagccctaaaagttgcatcaaacaaagtggccaaacatgagaaagcatgttc 168  Q
    ||||||||||  |||| |||||||| |||||||||||| |||| ||||||| |||||||| ||  |||| ||| |||||||||||||||||||| |||||    
T  44686598 tttcaccacttgtgggtttaggggtcggggcttttacgataggacagacagtcctaaaagctg-gtcaagcaatgtggccaaacatgagaaagcgtgttc 44686500  T
Q  169 tgacagtcaa 178  Q
    ||||| ||||    
T  44686499 tgacaatcaa 44686490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 6 - 219
Target Start/End: Complemental strand, 17344881 - 17344667
Alignment:
Q  6 catgcagatgttatggtgtacaaatgggtaagaggaaa-cactcatttgtagacttgaccagtatttcaccactcatgggattaggggttggggctttta 104  Q
    ||||| |||||||||||||||  ||||||| ||||||| ||  ||| ||||||||||||  |  |||||| |||  |||||||||| ||  |  ||||||    
T  17344881 catgcggatgttatggtgtacggatgggtaggaggaaaacatgcatgtgtagacttgactggggtttcacaacttgtgggattaggtgtcagacctttta 17344782  T
Q  105 cggtagggcagacagccctaaaagttgcatcaaacaaagtggccaaacatgagaaagcatgttctgacagtcaacatgtttttataccatttgtttttga 204  Q
    | |||||  || ||| ||| |||| ||| ||||  || ||||||||||| |||||| | |||| | ||| |||||||| |||||||||||||| ||||||    
T  17344781 ccgtaggaaagccagtccttaaagctgcgtcaagtaaggtggccaaacacgagaaaacgtgttttcacaatcaacatgcttttataccatttgcttttga 17344682  T
Q  205 cacttttggtttcct 219  Q
    ||||||  |||||||    
T  17344681 cactttcagtttcct 17344667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 122 - 202
Target Start/End: Original strand, 1296031 - 1296111
Alignment:
Q  122 ctaaaagttgcatcaaacaaagtggccaaacatgagaaagcatgttctgacagtcaacatgtttttataccatttgttttt 202  Q
    ||||||| ||| ||||||||| |||||||||||||||||  ||||||||||| | |||||||||||||||| ||| |||||    
T  1296031 ctaaaagctgcgtcaaacaaaatggccaaacatgagaaaatatgttctgacaataaacatgtttttatacctttttttttt 1296111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 140 - 216
Target Start/End: Original strand, 13147096 - 13147175
Alignment:
Q  140 aaagtggccaaacatgagaaagcatgttctgacagtcaacatgt---ttttataccatttgtttttgacacttttggttt 216  Q
    ||||||| ||||||||||||||| |||||||||| ||| ||| |   |||||||||||||| ||||||||||||||||||    
T  13147096 aaagtggtcaaacatgagaaagcgtgttctgacaatcagcatatactttttataccatttgattttgacacttttggttt 13147175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 69 - 210
Target Start/End: Complemental strand, 27502540 - 27502400
Alignment:
Q  69 tttcaccactcatgggattaggggttggggcttttacggtagggcagacagccctaaaagttgcatcaaacaaagtggccaaacatgagaaagcatgttc 168  Q
    ||||||||||  |||| ||||||||  | ||||||||| |||| || | | ||||||||| ||| |||| |||||||| ||||||||||||| | |||||    
T  27502540 tttcaccacttgtgggtttaggggtcagagcttttacgataggaca-ataaccctaaaagctgcgtcaagcaaagtggtcaaacatgagaaaacgtgttc 27502442  T
Q  169 tgacagtcaacatgtttttataccatttgtttttgacacttt 210  Q
     ||||  ||||||| |||||||| |||  |||||||||||||    
T  27502441 cgacaaacaacatgcttttatacaattgctttttgacacttt 27502400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 134 - 215
Target Start/End: Original strand, 34814812 - 34814893
Alignment:
Q  134 tcaaacaaagtggccaaacatgagaaagcatgttctgacagtcaacatgtttttataccatttgtttttgacacttttggtt 215  Q
    ||||| ||||||  ||||||||||||||| |||||||||| |||| ||| |||||||||||||| ||| |||||||| ||||    
T  34814812 tcaaataaagtgatcaaacatgagaaagcgtgttctgacaatcaatatgcttttataccatttgctttcgacactttcggtt 34814893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 143 - 206
Target Start/End: Original strand, 18744956 - 18745019
Alignment:
Q  143 gtggccaaacatgagaaagcatgttctgacagtcaacatgtttttataccatttgtttttgaca 206  Q
    ||||||||||| |||||||| |||||||||| |||||||  |||||||||||||| ||||||||    
T  18744956 gtggccaaacacgagaaagcgtgttctgacaatcaacatacttttataccatttgcttttgaca 18745019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 81 - 210
Target Start/End: Complemental strand, 3825894 - 3825764
Alignment:
Q  81 tgggattaggggttggggcttttacggtagggcagacagccctaaaagttgcatcaaacaaagtggccaaacatgagaaagcatgtt-ctgacagtcaac 179  Q
    |||||||||||||  || ||||||||||| | |||| ||||||||||| ||| |||| |||||||| ||||||||| ||||  | || |||||| || ||    
T  3825894 tgggattaggggtcaggacttttacggtatgacagagagccctaaaagctgcgtcaagcaaagtggtcaaacatgaaaaagttttttcctgacaatctac 3825795  T
Q  180 atgtttttataccatttgtttttgacacttt 210  Q
    ||||||||||  |||||| ||  ||||||||    
T  3825794 atgtttttatttcatttgcttcagacacttt 3825764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 149 - 219
Target Start/End: Original strand, 33612555 - 33612625
Alignment:
Q  149 aaacatgagaaagcatgttctgacagtcaacatgtttttataccatttgtttttgacacttttggtttcct 219  Q
    |||||||||||| | |||| ||||| |||||||| |||||||| |||||| |||||||||||||| |||||    
T  33612555 aaacatgagaaaacgtgttttgacaatcaacatgattttatacaatttgtatttgacacttttggcttcct 33612625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 164 - 218
Target Start/End: Original strand, 2886638 - 2886692
Alignment:
Q  164 tgttctgacagtcaacatgtttttataccatttgtttttgacacttttggtttcc 218  Q
    |||||||||| |||||||||||||||| ||||||||||||| | ||| |||||||    
T  2886638 tgttctgacaatcaacatgtttttatatcatttgtttttgatattttcggtttcc 2886692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 134 - 212
Target Start/End: Complemental strand, 5679392 - 5679314
Alignment:
Q  134 tcaaacaaagtggccaaacatgagaaagcatgttctgacagtcaacatgtttttataccatttgtttttgacacttttg 212  Q
    |||| |||||||||||||||||||||| ||||||  || | |||||||  ||| ||||||||| | |||||||||||||    
T  5679392 tcaagcaaagtggccaaacatgagaaaacatgttaagataatcaacatcctttcataccatttatgtttgacacttttg 5679314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 227 - 293
Target Start/End: Complemental strand, 17344636 - 17344570
Alignment:
Q  227 agttcaaagggtcatgcacaacaatgtcataactccaaggtctgtgaatgttgtgtttacgaagatt 293  Q
    |||||||| ||||||||| |||||||||||  |||| |||||  |||||||||||||||||| ||||    
T  17344636 agttcaaaaggtcatgcataacaatgtcatgtctcctaggtccatgaatgttgtgtttacgaggatt 17344570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 227 - 293
Target Start/End: Original strand, 41868017 - 41868083
Alignment:
Q  227 agttcaaagggtcatgcacaacaatgtcataactccaaggtctgtgaatgttgtgtttacgaagatt 293  Q
    |||||||| ||||||||| |||||||||||  |||| |||||  |||||||||||||||||| ||||    
T  41868017 agttcaaaaggtcatgcataacaatgtcatgtctcccaggtccatgaatgttgtgtttacgaggatt 41868083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 169 - 216
Target Start/End: Original strand, 20142753 - 20142800
Alignment:
Q  169 tgacagtcaacatgtttttataccatttgtttttgacacttttggttt 216  Q
    ||||| |||||||| |||||||||||||  ||||||||||||||||||    
T  20142753 tgacaatcaacatgcttttataccattttcttttgacacttttggttt 20142800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 227 - 285
Target Start/End: Complemental strand, 13413349 - 13413291
Alignment:
Q  227 agttcaaagggtcatgcacaacaatgtcataactccaaggtctgtgaatgttgtgttta 285  Q
    |||||||| ||||||||| |||||||||||  |||| |||||  |||||||||||||||    
T  13413349 agttcaaaaggtcatgcataacaatgtcatgtctcctaggtccatgaatgttgtgttta 13413291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 69 - 146
Target Start/End: Complemental strand, 9675023 - 9674946
Alignment:
Q  69 tttcaccactcatgggattaggggttggggcttttacggtagggcagacagccctaaaagttgcatcaaacaaagtgg 146  Q
    ||||||||||||||||||||||| |  |  |||||| |||||| || | ||||||||||  ||| |||||||||||||    
T  9675023 tttcaccactcatgggattagggatcagaccttttatggtaggacaaatagccctaaaatatgcgtcaaacaaagtgg 9674946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 144 - 197
Target Start/End: Complemental strand, 44720427 - 44720374
Alignment:
Q  144 tggccaaacatgagaaagcatgttctgacagtcaacatgtttttataccatttg 197  Q
    ||||||||||||| ||| | |||| ||||| |||||||||||||||||| ||||    
T  44720427 tggccaaacatgaaaaaacgtgttatgacaatcaacatgtttttataccgtttg 44720374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0224 (Bit Score: 67; Significance: 2e-29; HSPs: 1)
Name: scaffold0224
Description:

Target: scaffold0224; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 68 - 218
Target Start/End: Original strand, 18292 - 18441
Alignment:
Q  68 atttcaccactcatgggattaggggttggggcttttacggtagggcagacagccctaaaagttgcatcaaacaaagtggccaaacatgagaaagcatgtt 167  Q
    ||||||| |||| |||||||| |||| || ||||||| | |||| || ||| |||||||||||||||||||||||| |||||||||||||||| | ||||    
T  18292 atttcactactcgtgggattacgggtcggagcttttatgataggacaaacaaccctaaaagttgcatcaaacaaagcggccaaacatgagaaa-cgtgtt 18390  T
Q  168 ctgacagtcaacatgtttttataccatttgtttttgacacttttggtttcc 218  Q
    || ||| |||||||||||||||  ||| || |||||||||||||| |||||    
T  18391 ctcacaatcaacatgtttttatgtcatctgcttttgacacttttgatttcc 18441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0186 (Bit Score: 66; Significance: 9e-29; HSPs: 1)
Name: scaffold0186
Description:

Target: scaffold0186; HSP #1
Raw Score: 66; E-Value: 9e-29
Query Start/End: Original strand, 69 - 219
Target Start/End: Complemental strand, 10543 - 10389
Alignment:
Q  69 tttcaccactcatgggattaggggttggggcttttacggtagggcagacagccctaaaagttgcatcaaacaaagtggccaaacatgagaaagcatgttc 168  Q
    ||||||||||| ||||||||||||||||||||||||| || || ||  |||||||||||||||| ||||  ||| ||||||||||||| || || |||||    
T  10543 tttcaccactcgtgggattaggggttggggcttttacagttggacaagcagccctaaaagttgcgtcaagtaaaatggccaaacatgataatgcgtgttc 10444  T
Q  169 tga----cagtcaacatgtttttataccatttgtttttgacacttttggtttcct 219  Q
    |||    || |||||||| |||||||||||||| ||||||||||| ||| |||||    
T  10443 tgacaatcaatcaacatgcttttataccatttgcttttgacacttgtggcttcct 10389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1768 (Bit Score: 62; Significance: 2e-26; HSPs: 1)
Name: scaffold1768
Description:

Target: scaffold1768; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 12 - 216
Target Start/End: Original strand, 54 - 259
Alignment:
Q  12 gatgttatggtgtacaaatgggtaagaggaaa-cactcatttgtagacttgaccagtatttcaccactcatgggattaggggttggggcttttacggtag 110  Q
    ||||||||| |||||  ||||||| ||||||| ||  ||| | ||||||||||  |  ||||||||||  |||||||| | || ||| ||||||| ||||    
T  54 gatgttatgatgtacggatgggtaggaggaaaacatgcatgtatagacttgactggggtttcaccacttgtgggattaagtgtcgggccttttactgtag 153  T
Q  111 ggcagacagccctaaaagttgcatcaaacaaagtggccaaacatgagaaagcatgttctgacagtcaacatgtttttataccatttgtttttgacacttt 210  Q
    | ||| |||||||||||  ||| |||| |||||||||||||||||||| ||   ||| ||||  |||||||| ||||||||||||||| |||||||||||    
T  154 gacaggcagccctaaaaactgcgtcaagcaaagtggccaaacatgagacagtgggttatgaccatcaacatgcttttataccatttgtgtttgacacttt 253  T
Q  211 tggttt 216  Q
    ||||||    
T  254 tggttt 259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0110 (Bit Score: 59; Significance: 1e-24; HSPs: 1)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 69 - 219
Target Start/End: Original strand, 47467 - 47617
Alignment:
Q  69 tttcaccactcatgggattaggggttggggcttttacggtagggcagacagccctaaaagttgcatcaaacaaagtggccaaacatgagaaagcatgttc 168  Q
    ||||||||||  ||||||||||| ||| | ||||||||||||| || | |  |||||||||||| ||||  ||| |||||||||||||||||   |||||    
T  47467 tttcaccacttgtgggattagggattgagacttttacggtaggacaaataaacctaaaagttgcgtcaagtaaaatggccaaacatgagaaaatgtgttc 47566  T
Q  169 tgacagtcaacatgtttttataccatttgtttttgacacttttggtttcct 219  Q
    ||||||| ||||| ||||||||||||||| |||| ||||||| | ||||||    
T  47567 tgacagttaacatatttttataccatttgcttttaacactttcgatttcct 47617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0031 (Bit Score: 58; Significance: 5e-24; HSPs: 1)
Name: scaffold0031
Description:

Target: scaffold0031; HSP #1
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 117 - 210
Target Start/End: Complemental strand, 49542 - 49449
Alignment:
Q  117 cagccctaaaagttgcatcaaacaaagtggccaaacatgagaaagcatgttctgacagtcaacatgtttttataccatttgtttttgacacttt 210  Q
    |||||||||||||||||||||||||||||| ||||  ||||||| | |||||||||| ||||| || |||||||||||||| ||||||||||||    
T  49542 cagccctaaaagttgcatcaaacaaagtggtcaaatgtgagaaatcgtgttctgacaatcaacgtgcttttataccatttgcttttgacacttt 49449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 51; Significance: 8e-20; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 81 - 219
Target Start/End: Complemental strand, 103272 - 103135
Alignment:
Q  81 tgggattaggggttggggcttttacggtagggcagacagccctaaaagttgcatcaaacaaagtggccaaacatgagaaagcatgttctgacagtcaaca 180  Q
    |||||| ||| || ||| ||||||| ||||| ||| ||||||| |||| ||| ||||  ||  |||||||||| |||||||| ||| |||||| ||||||    
T  103272 tgggataaggtgtcgggccttttaccgtaggacaggcagccctcaaagctgcgtcaagtaagatggccaaacacgagaaagcgtgt-ctgacaatcaaca 103174  T
Q  181 tgtttttataccatttgtttttgacacttttggtttcct 219  Q
    || |||||||||||||| |||||||||||| ||||||||    
T  103173 tgcttttataccatttgcttttgacactttcggtttcct 103135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0493 (Bit Score: 50; Significance: 3e-19; HSPs: 1)
Name: scaffold0493
Description:

Target: scaffold0493; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 150 - 219
Target Start/End: Original strand, 8525 - 8594
Alignment:
Q  150 aacatgagaaagcatgttctgacagtcaacatgtttttataccatttgtttttgacacttttggtttcct 219  Q
    ||||||||||| |||||||||||| |||||||||||||||||||||||  ||| ||||||||||||||||    
T  8525 aacatgagaaaacatgttctgacaatcaacatgtttttataccatttgcgtttaacacttttggtttcct 8594  T

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Target: scaffold0119 (Bit Score: 49; Significance: 1e-18; HSPs: 1)
Name: scaffold0119
Description:

Target: scaffold0119; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 107 - 191
Target Start/End: Complemental strand, 16275 - 16191
Alignment:
Q  107 gtagggcagacagccctaaaagttgcatcaaacaaagtggccaaacatgagaaagcatgttctgacagtcaacatgtttttatac 191  Q
    ||||| |||||| | ||||||| ||| ||||||||| ||||||||||||||||| |||||||||||| | |||||||||||||||    
T  16275 gtaggacagacaacgctaaaagctgcgtcaaacaaaatggccaaacatgagaaaacatgttctgacaataaacatgtttttatac 16191  T

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Target: scaffold0470 (Bit Score: 41; Significance: 0.00000000000008; HSPs: 1)
Name: scaffold0470
Description:

Target: scaffold0470; HSP #1
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 123 - 219
Target Start/End: Complemental strand, 7727 - 7631
Alignment:
Q  123 taaaagttgcatcaaacaaagtggccaaacatgagaaagcatgttctgacagtcaacatgtttttataccatttgtttttgacacttttggtttcct 219  Q
    |||||||||| ||||| | ||| |  |||||||||||||| |||||| ||| |||||||| ||||| |||||||| ||||||||||||  |||||||    
T  7727 taaaagttgcgtcaaatagagtagttaaacatgagaaagcgtgttctcacaatcaacatgattttaaaccatttgcttttgacactttcagtttcct 7631  T

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Target: scaffold0085 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: scaffold0085
Description:

Target: scaffold0085; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 134 - 187
Target Start/End: Complemental strand, 37444 - 37391
Alignment:
Q  134 tcaaacaaagtggccaaacatgagaaagcatgttctgacagtcaacatgttttt 187  Q
    ||||||||| ||  ||||||||||||||||| |||||||| |||||||||||||    
T  37444 tcaaacaaaatgatcaaacatgagaaagcatattctgacaatcaacatgttttt 37391  T

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