View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11477_low_2 (Length: 760)
Name: NF11477_low_2
Description: NF11477
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11477_low_2 |
 | |
|
| [»] scaffold0496 (2 HSPs) |
| | |
|
| [»] scaffold0054 (1 HSPs) |
| | |
|
Alignment Details
Target: chr2 (Bit Score: 586; Significance: 0; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 586; E-Value: 0
Query Start/End: Original strand, 13 - 734
Target Start/End: Complemental strand, 5536018 - 5535293
Alignment:
| Q |
13 |
cagatgttcaattcggtgttcttccagtatacaaacctcagtagcatcctaaccttctctgatggtcttatatagcactatcgaatctaaggtccgccaa |
112 |
Q |
| |
|
|||||||||||| |||||||||||| | |||||| |||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
5536018 |
cagatgttcaatacggtgttcttccggcatacaagcctcagtagcatcctaaccttctctggtggtcttatatagcactgtcgaatctaaggtccgccaa |
5535919 |
T |
|
| Q |
113 |
gggttacaaagtggagttgtttcgttggttggtggtatttactttcagatatgccgccttcatggacgagaatcactatcgttggttttagttgtgatac |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| |||| ||||||||||||||||||||| ||||||||||| |
|
|
| T |
5535918 |
gggttacaaagtggagttgtttcgttggttggtggtatttgctttcagatatgtcgccttcgtggaggagaatcactatcgttggtttcagttgtgatac |
5535819 |
T |
|
| Q |
213 |
tgtagatgaatttatagtttgttgtttcgaaattcgttagggtctgttattgtgctcgaggtgctcaaccccattgattgaccatcccacgatctggcta |
312 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||| |
|
|
| T |
5535818 |
tgtagatgaatttatagtttgttgtttcgaaattcgttagggtctgttattgtgctcgaggtgctcaaccccgttggttgaccatcccacgatctggcta |
5535719 |
T |
|
| Q |
313 |
tcgatggttctggnnnnnnnnnnnnn----atttggcttaaaaaagcgttggtgtctattgtgattgttgttaacatgggttgttggaacatgaatttga |
408 |
Q |
| |
|
||||||||||||| ||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
5535718 |
tcgatggttctgggttttttttttttgttgatttggcttaaaaaagccttgatgtctattgtgattgttgttaacatgggttgttggaacgtgaatttga |
5535619 |
T |
|
| Q |
409 |
ccgtgttggcggtcaattcattcgccgtatcgatccaagtgaagactcgcacaaatccgttttgatctttgatttcgttttgtttaatgaattgtttggg |
508 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
5535618 |
ccgtgttggcggtcaattcattcgccgtatcgatccaagtgaagactcgcacaaatccgttttgatctttgatttcgttttgtttaatgaattgttgggg |
5535519 |
T |
|
| Q |
509 |
tacggattgtttgagactcgaaagagtcattaatgcttgttgctgagttgatggtacgtgattcgttctgtgttgacaattggttcactcgccaacttaa |
608 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5535518 |
tacagattgtttgagactcgaaagagtcattaatgcttgttgctgagttgatggtacgtgattcgttctgtgttgacaattggttcactcgccaacttaa |
5535419 |
T |
|
| Q |
609 |
agacacggttgatgctcgcaaacatcgtttgttagaattgactagggttgaattgagtatgttgttgttattggttgtatttcccgttagggttcatgca |
708 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
5535418 |
agacacggttgatgctcgcaaacatcgtttgttagaattgactagggttgaattgagtatgttgttgttattggttgtatttctcgttagggttcatgca |
5535319 |
T |
|
| Q |
709 |
cttggattcactgggtcaggttttat |
734 |
Q |
| |
|
|||| ||||| ||||||||||||||| |
|
|
| T |
5535318 |
cttgaattcattgggtcaggttttat |
5535293 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 153; E-Value: 1e-80
Query Start/End: Original strand, 339 - 734
Target Start/End: Original strand, 19813290 - 19813696
Alignment:
| Q |
339 |
atttggcttaaaaaagcgttggtgtctattgtgattgttgttaacatgggttgttggaacatgaatttgaccgtgttggcggtcaattcattcgccgtat |
438 |
Q |
| |
|
||||||||| ||||||||||| || | |||||||||||||||| | | |||||||||| |||||||||| |||||||||| || ||||||||| ||||| |
|
|
| T |
19813290 |
atttggcttgaaaaagcgttgatgccggttgtgattgttgttaataggagttgttggaagatgaatttgatcgtgttggcgatcgattcattcgtcgtat |
19813389 |
T |
|
| Q |
439 |
cgatccaagtgaagactcgcacaaatccgttttgatctttgatttcgttttgtttaatgaattgtttgggtacggattgtttgagactcgaaagagtcat |
538 |
Q |
| |
|
|||||||| |||||| ||||||||||| |||| |||||| ||||||||||||||||||||||| |||||| ||||||| ||||| |||||||| | |
|
|
| T |
19813390 |
cgatccaaatgaagattcgcacaaatctgtttcatcctttgaattcgttttgtttaatgaattgttggggtacatattgttttggactcaaaagagtcgt |
19813489 |
T |
|
| Q |
539 |
taatgcttgttgct-----------gagttgatggtacgtgattcgttctgtgttgacaattggttcactcgccaacttaaagacacggttgatgctcgc |
627 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||| ||| ||||| | | |||||| |||||||| || |||| |||| ||||||| |
|
|
| T |
19813490 |
taatgcttgttgctgatggagcagggagttgatggtacgtgatttgttttgtgtgaatggtcggttcattcgccaacatatagaccgagttggtgctcgc |
19813589 |
T |
|
| Q |
628 |
aaacatcgtttgttagaattgactagggttgaattgagtatgttgttgttattggttgtatttcccgttagggttcatgcacttggattcactgggtcag |
727 |
Q |
| |
|
||||||||||||||| | ||| ||||||||||| |||| | ||| |||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
19813590 |
aaacatcgtttgttatagttgtttagggttgaatagagtgtattgcaattattggttgtatttccctttagggttcatgcacttggattcactgggtcag |
19813689 |
T |
|
| Q |
728 |
gttttat |
734 |
Q |
| |
|
||||||| |
|
|
| T |
19813690 |
gttttat |
19813696 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 130; E-Value: 6e-67
Query Start/End: Original strand, 371 - 731
Target Start/End: Original strand, 22884056 - 22884428
Alignment:
| Q |
371 |
gattgttgttaacatg-ggttgttggaacatgaatttgaccgtgttggcggtcaattcattcgccgtatcgatccaagtgaagactcgcacaaatccgtt |
469 |
Q |
| |
|
|||||||||||||| | |||||||||||| |||||||||||||||||| |||| ||||||||| ||||| || |||||||||||| | |||||||| | |
|
|
| T |
22884056 |
gattgttgttaacaagaggttgttggaacgtgaatttgaccgtgttggaggtcgattcattcgacgtattgag--aagtgaagactcactcaaatccgct |
22884153 |
T |
|
| Q |
470 |
ttgatc-tttgatttcgtt-ttgtttaatgaattgtttgggtacggattgtttgagactcgaaagagtcattaatgcttgttgctga-----------gt |
556 |
Q |
| |
|
|||||| ||||| ||| || ||| ||||||||||||| |||| | | ||||||| ||||||||||||| ||||||||||||||||| || |
|
|
| T |
22884154 |
ttgatcctttgaattctttgttgattaatgaattgttagggtgcaggttgtttgggactcgaaagagtgtttaatgcttgttgctgatggtgcagggagt |
22884253 |
T |
|
| Q |
557 |
tgatggtacgtgattcgttctgtgttgacaattggttcactcgccaacttaaagacacggttgatgctcgcaaacatcgtttgttagaattgactagggt |
656 |
Q |
| |
|
|||||||| ||||| |||||| ||||| || |||||||| || |||||||| || | || ||| |||||||||||||||||||||||| ||||||| ||| |
|
|
| T |
22884254 |
tgatggtatgtgatccgttctatgttgccagttggttcattcaccaacttataggcccgattggtgctcgcaaacatcgtttgttagacttgactaaggt |
22884353 |
T |
|
| Q |
657 |
tgaattgagtatgttgttgttattggttgtatttcccgttagggttcatgcacttggattcactgggtcaggttt |
731 |
Q |
| |
|
||||| |||| |||||||||| |||||||||||| ||||||||| || |||||||||||||||||| |||||| |
|
|
| T |
22884354 |
tgaatcgagtgtgttgttgttgttggttgtattttatgttagggttgattcacttggattcactgggttaggttt |
22884428 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 553 - 661
Target Start/End: Complemental strand, 30960763 - 30960655
Alignment:
| Q |
553 |
gagttgatggtacgtgattcgttctgtgttgacaattggttcactcgccaacttaaagacacggttgatgctcgcaaacatcgtttgttagaattgacta |
652 |
Q |
| |
|
||||||||| || |||| | ||||||||||||| |||||||| ||||| ||||| |||| || ||| || |||||||||||||| ||||| ||||||| |
|
|
| T |
30960763 |
gagttgatgacacatgatcctttctgtgttgacagttggttcattcgccgacttatagacccgattggtgttcgcaaacatcgttcgttagccttgacta |
30960664 |
T |
|
| Q |
653 |
gggttgaat |
661 |
Q |
| |
|
|||| |||| |
|
|
| T |
30960663 |
gggtcgaat |
30960655 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 264; Significance: 1e-147; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 17 - 734
Target Start/End: Complemental strand, 10280783 - 10280054
Alignment:
| Q |
17 |
tgttcaattcggtgttcttccagtatacaaacctcagtagcatcctaaccttctctgatggtcttatatagcactatcgaatctaaggtccgccaagggt |
116 |
Q |
| |
|
||||||||||||||||||||| ||||| ||||||||||||||||||||||||| |||||||||| | |||| |||| ||||||||| | ||||||| |
|
|
| T |
10280783 |
tgttcaattcggtgttcttccgacgtacaagtctcagtagcatcctaaccttctctggtggtcttatagatcactgtcgactctaaggtcagtcaagggt |
10280684 |
T |
|
| Q |
117 |
tacaaagtggagttgtttcgttggttggtggtatttactttcagatatgccgccttcatggacgagaatcactatcgttggttttagttgtgatactgta |
216 |
Q |
| |
|
| |||||| |||||||||||||||| |||||||| |||||| || || ||||| | || || ||||| |||||||||| |||||||||| |||| |
|
|
| T |
10280683 |
tgtgaagtggcgttgtttcgttggttgatggtatttgctttcaaatctgtcgcctccgtgtcgaaggttcactgtcgttggtttcagttgtgatattgta |
10280584 |
T |
|
| Q |
217 |
gatgaatttatagtttgttgtttcgaaattcgttagggtctgttattgtgctcgaggtgctcaaccccattgattgaccatcccacgatctggctatcga |
316 |
Q |
| |
|
|| | |||| |||||||||||| |||| ||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
10280583 |
gacggatttctagtttgttgttctgaaactcgttagggtctgttattgtgctcgtggtgctcagtcccattgattgaccatcccacgatctggctatcga |
10280484 |
T |
|
| Q |
317 |
tggttctggnnnnnnnnnnnnnatt-tggcttaaaaaagcgttggtgtctattgtgattgttgttaacatggg-ttgttggaacatgaatttgaccgtgt |
414 |
Q |
| |
|
|| ||| || | | |||||| ||||| ||||| || | |||||||||||||||||| ||| || |||||| ||||||||||||||| |
|
|
| T |
10280483 |
tgattccgggttgctttgtgttaatctggcttgaaaaaacgttgatgcatgttgtgattgttgttaacagggggttattggaatgtgaatttgaccgtgt |
10280384 |
T |
|
| Q |
415 |
tggcggtcaattcattcgccgtatcgatccaagtgaagactcgcacaaatccgttttgat-ctttgatttcgttttgtttaatgaattgtttgggtacgg |
513 |
Q |
| |
|
|||| ||||||||||| ||||||||||| |||||||||||||| |||| |||||||||| |||||| ||| ||||||||||||||||| | |||||| | |
|
|
| T |
10280383 |
tggcattcaattcattcaccgtatcgatctaagtgaagactcgcccaaacccgttttgatcctttgaattcattttgtttaatgaattggtggggtacag |
10280284 |
T |
|
| Q |
514 |
attgtttgagactcgaaagagtcattaatgcttgttgct-----------gagttgatggtacgtgattcgttctgtgttgacaattggttcactcgcca |
602 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||| | |||||||||||||||||| ||||| ||| |||| | |||| |||||| |
|
|
| T |
10280283 |
attgtttggaactcgaaagagtcattaatgcttgtttttcatggtgtaaggagttgatggtacgtgatccgttc--tgtcgacagtcaattcattcgcca |
10280186 |
T |
|
| Q |
603 |
acttaaagacacggttgatgctcgcaaacatcgtttgttagaattgactagggttgaattgagtatgttgttgttattggttgtatttcccgttagggtt |
702 |
Q |
| |
|
||||| |||| ||||| ||||||||| |||||||||||||||||||||||| |||||| ||||||| || ||||||||||||||||||||||| ||||| |
|
|
| T |
10280185 |
acttatagacttggttggtgctcgcaatcatcgtttgttagaattgactaggattgaatcgagtatgctgctgttattggttgtatttcccgtttgggtt |
10280086 |
T |
|
| Q |
703 |
catgcacttggattcactgggtcaggttttat |
734 |
Q |
| |
|
|||||||||| |||||||||||||| |||||| |
|
|
| T |
10280085 |
catgcacttgaattcactgggtcagattttat |
10280054 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 553 - 734
Target Start/End: Complemental strand, 44031096 - 44030915
Alignment:
| Q |
553 |
gagttgatggtacgtgattcgttctgtgttgacaattggttcactcgccaacttaaagacacggttgatgctcgcaaacatcgtttgttagaattgacta |
652 |
Q |
| |
|
||||||||||||| |||| || |||||||||||| | |||||| || || ||| |||| |||||| |||| ||||||||||||||||||| ||||||| |
|
|
| T |
44031096 |
gagttgatggtacatgatccgctctgtgttgacagtcggttcattcacctgcttttagactcggttggtgctggcaaacatcgtttgttagagttgacta |
44030997 |
T |
|
| Q |
653 |
gggttgaattgagtatgttgttgttattggttgtatttcccgttagggttcatgcacttggattcactgggtcaggttttat |
734 |
Q |
| |
|
|||| |||| ||| | |||||||| ||||||||||||| | |||||||| | |||||||||||||| ||||||||||||| |
|
|
| T |
44030996 |
gggtagaatcaagtgtattgttgttcttggttgtatttctcattagggttgacacacttggattcactaggtcaggttttat |
44030915 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 386 - 438
Target Start/End: Complemental strand, 44031285 - 44031233
Alignment:
| Q |
386 |
gggttgttggaacatgaatttgaccgtgttggcggtcaattcattcgccgtat |
438 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||| ||||| |
|
|
| T |
44031285 |
gggttgttggaacatgaatttgatcgtgttggcggtcaattcattcgtcgtat |
44031233 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 207; Significance: 1e-113; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 17 - 734
Target Start/End: Complemental strand, 13058847 - 13058116
Alignment:
| Q |
17 |
tgttcaattcggtgttcttccagtatacaaacctcagtagcatcctaaccttctctgatggtcttatatagcactatcgaatctaaggtccgccaagggt |
116 |
Q |
| |
|
|||||| |||| ||||||||| | |||||| |||| |||||||||||||||| | | |||||||||| | |||| |||| |||||| | | ||||||| |
|
|
| T |
13058847 |
tgttcagttcgctgttcttcctgcatacaagcctcggtagcatcctaaccttattcggtggtcttatagatcactgtcgactctaagc-ctgtcaagggt |
13058749 |
T |
|
| Q |
117 |
tacaaagtggagttgtttcgttggttggtggtatttactttcagatatgccgccttcatggacgagaatcactatcgttggttttagttgtgatactgta |
216 |
Q |
| |
|
| |||||| |||||||||| ||||||||||||| ||| ||||| | |||||| | || ||| ||||||| ||||||| ||||||||| |||| |
|
|
| T |
13058748 |
tgtgaagtggctttgtttcgttagttggtggtatttgcttccagattttccgcctccgtgtcagaggttcactattattggtttcggttgtgatattgta |
13058649 |
T |
|
| Q |
217 |
gatgaatttatagtttgttgtttcgaaattcgttagggtctgttattgtgctcgaggtgctcaaccccattgattgaccatcccac--gatctggctatc |
314 |
Q |
| |
|
|| | |||| |||||||||||||||||| |||||||||||||||||||||| | |||||||| | ||||||||| ||||||||| |||||||||||| |
|
|
| T |
13058648 |
gacggatttctagtttgttgtttcgaaacccgttagggtctgttattgtgcttgtggtgctcagtctcattgattgtccatcccacacgatctggctatc |
13058549 |
T |
|
| Q |
315 |
gatg--gttctggnnnnnnnnnnnnn-atttggcttaaaaaagcgttggtgtctattgtgattgttgttaacatgggttgttggaacatgaatttgaccg |
411 |
Q |
| |
|
|||| ||||||| ||||||||| ||||||||||| || |||||||| ||||| |||||| ||||||||||||| || ||||||||| |
|
|
| T |
13058548 |
gatgtggttctgggttgctttgtgttgatttggcttgaaaaagcgttgatgcctattgtggttgttattaacaggggttgttggaacgtgcatttgaccg |
13058449 |
T |
|
| Q |
412 |
tgttggcggtcaattcattcgccgtatcgatccaagtgaagactcgcacaaatccgttttgatctttgatttcgttttgtttaatgaattgtttgggtac |
511 |
Q |
| |
|
||||||| ||| || ||||| ||||||||||||||||||||| ||| |||| ||||||||||||| ||||||||||||||||||||||| |||||| |
|
|
| T |
13058448 |
tgttggcagtcgatacattcattgtatcgatccaagtgaagactgacaccaatctattttgatctttgaattcgttttgtttaatgaattgttggggtac |
13058349 |
T |
|
| Q |
512 |
ggattgtttgagactcgaaagagtcattaatgcttgttgct-----------gagttgatggtacgtgattcgttctgtgttgacaattggttcactcgc |
600 |
Q |
| |
|
|||||||| ||||||||||||| |||||||||| || | |||||||||||||||||| ||| |||||||||| | ||||| | || |
|
|
| T |
13058348 |
aaattgtttgggactcgaaagagttgttaatgcttgatgttgatggtgcagggagttgatggtacgtgatctgttatgtgttgacagctcgttcattagc |
13058249 |
T |
|
| Q |
601 |
caacttaaagacacggttgatgctcgcaaacatcgtttgttagaattgactagggttgaattgagtatgttgttgttattggttgtatttcccgttaggg |
700 |
Q |
| |
|
||||||| |||| ||||| ||||||||| |||||||||||||||||||||||||||||||||||| || || | ||||| ||||||||| | ||||||| |
|
|
| T |
13058248 |
caacttatagacctggttggtgctcgcaagcatcgtttgttagaattgactagggttgaattgagtgtgctg-tattattcgttgtattttctgttaggg |
13058150 |
T |
|
| Q |
701 |
ttcatgcacttggattcactgggtcaggttttat |
734 |
Q |
| |
|
|||||||||||| ||||||| ||| || |||||| |
|
|
| T |
13058149 |
ttcatgcacttgaattcactaggttagattttat |
13058116 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 66; E-Value: 9e-29
Query Start/End: Original strand, 553 - 734
Target Start/End: Complemental strand, 6946831 - 6946650
Alignment:
| Q |
553 |
gagttgatggtacgtgattcgttctgtgttgacaattggttcactcgccaacttaaagacacggttgatgctcgcaaacatcgtttgttagaattgacta |
652 |
Q |
| |
|
||||||||||||| |||| || |||||||||||| | ||||| || ||| |||| |||| ||||| |||| | ||||||| ||||||||| ||||||| |
|
|
| T |
6946831 |
gagttgatggtacatgatccgctctgtgttgacagtcagttcattcaccagcttatagacccggttcgtgctggtaaacatcatttgttagagttgacta |
6946732 |
T |
|
| Q |
653 |
gggttgaattgagtatgttgttgttattggttgtatttcccgttagggttcatgcacttggattcactgggtcaggttttat |
734 |
Q |
| |
|
|||| |||| |||| | |||||||| || ||||||||||| |||||||| | |||| ||||||||||||||||||||||| |
|
|
| T |
6946731 |
gggtagaatcgagtgtattgttgttcctgattgtatttcccattagggttgacacactcggattcactgggtcaggttttat |
6946650 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 386 - 438
Target Start/End: Complemental strand, 6947041 - 6946989
Alignment:
| Q |
386 |
gggttgttggaacatgaatttgaccgtgttggcggtcaattcattcgccgtat |
438 |
Q |
| |
|
||||||||||||| ||||||||| |||||||| |||||||||||||||||||| |
|
|
| T |
6947041 |
gggttgttggaacgtgaatttgatcgtgttggtggtcaattcattcgccgtat |
6946989 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 495 - 549
Target Start/End: Complemental strand, 6946900 - 6946846
Alignment:
| Q |
495 |
atgaattgtttgggtacggattgtttgagactcgaaagagtcattaatgcttgtt |
549 |
Q |
| |
|
|||||||||| | ||||||||||||| |||||||||||||| | |||||||||| |
|
|
| T |
6946900 |
atgaattgttggagtacggattgttttggactcgaaagagtcgtcaatgcttgtt |
6946846 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0496 (Bit Score: 95; Significance: 4e-46; HSPs: 2)
Name: scaffold0496
Description:
Target: scaffold0496; HSP #1
Raw Score: 95; E-Value: 4e-46
Query Start/End: Original strand, 386 - 736
Target Start/End: Original strand, 7690 - 8046
Alignment:
| Q |
386 |
gggttgttggaacatgaatttgaccgtgttggcggtcaattcattcgccgtatcgatccaagtgaagactcgcacaaatccgttttgatc-tttgatttc |
484 |
Q |
| |
|
|||||||||||||||||||||| ||||||||| ||| |||||||||| ||||||| |||| |||||||||||||| |||||||| |||| ||| |
|
|
| T |
7690 |
gggttgttggaacatgaatttgcccgtgttggtggttaattcattcgttgtatcga-----gtgaggactcgcacaaatctattttgatcctttgcattc |
7784 |
T |
|
| Q |
485 |
gtttt-gtttaatgaattgtttgggtacggattgtttgagactcgaaagagtcattaatgcttgttgct-----------gagttgatggtacgtgattc |
572 |
Q |
| |
|
||||| | ||||| ||||||| || ||| | | |||| ||||| |||||||| |||| ||||| |||| || |||||| ||| |||||| |
|
|
| T |
7785 |
gtttttgcttaataaattgttgggatacaaactatttgggactcaaaagagtcgttaacgcttgctgctcatggtgtagagatttgatgatacatgattc |
7884 |
T |
|
| Q |
573 |
gttctgtgttgacaattggttcactcgccaacttaaagacacggttgatgctcgcaaacatcgtttgttagaattgactagggttgaattgagtatgttg |
672 |
Q |
| |
|
||| ||||||||| || ||| | ||||||||||| |||| |||||| ||||| ||||||| |||||| ||| |||||||||||||||| |||| | || |
|
|
| T |
7885 |
gtt--gtgttgacagttagttaattcgccaacttatagacccggttggtgctcacaaacattgtttgtaagacttgactagggttgaatcgagtgtatta |
7982 |
T |
|
| Q |
673 |
ttgttattggttgtatttcccgttagggttcatgcacttggattcactgggtcaggttttatat |
736 |
Q |
| |
|
|||||||||||||||||| || ||||||||||| ||||||||| || ||||||||||||||||| |
|
|
| T |
7983 |
ttgttattggttgtattttccattagggttcattcacttggatgcattgggtcaggttttatat |
8046 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0496; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 281 - 325
Target Start/End: Original strand, 7589 - 7633
Alignment:
| Q |
281 |
ccccattgattgaccatcccacgatctggctatcgatggttctgg |
325 |
Q |
| |
|
|||||||||||||||||| |||||||| ||||| ||||||||||| |
|
|
| T |
7589 |
ccccattgattgaccatcgcacgatctagctattgatggttctgg |
7633 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 84; Significance: 2e-39; HSPs: 8)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 553 - 724
Target Start/End: Complemental strand, 35712651 - 35712480
Alignment:
| Q |
553 |
gagttgatggtacgtgattcgttctgtgttgacaattggttcactcgccaacttaaagacacggttgatgctcgcaaacatcgtttgttagaattgacta |
652 |
Q |
| |
|
|||||||| ||||||||| |||| |||||||||| | | |||| ||||||||||| || | ||||| ||||| ||||||||||||||||||||||| || |
|
|
| T |
35712651 |
gagttgatagtacgtgatccgttatgtgttgacattcgattcattcgccaacttataggcctggttggtgctcacaaacatcgtttgttagaattgatta |
35712552 |
T |
|
| Q |
653 |
gggttgaattgagtatgttgttgttattggttgtatttcccgttagggttcatgcacttggattcactgggt |
724 |
Q |
| |
|
|||||||||||||| | ||||| ||||||||||||||| |||||||||| || |||||||||||| ||||| |
|
|
| T |
35712551 |
gggttgaattgagtgtattgtttttattggttgtatttttcgttagggttgattcacttggattcattgggt |
35712480 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 554 - 734
Target Start/End: Complemental strand, 29508871 - 29508691
Alignment:
| Q |
554 |
agttgatggtacgtgattcgttctgtgttgacaattggttcactcgccaacttaaagacacggttgatgctcgcaaacatcgtttgttagaattgactag |
653 |
Q |
| |
|
|||||||||||| |||| || ||||| |||||| | |||||| || |||||||| ||| |||||| |||| ||||||||||||||||| | |||||||| |
|
|
| T |
29508871 |
agttgatggtacatgatccgctctgttttgacagtcggttcattcaccaacttatagatccggttggtgctggcaaacatcgtttgttaaagttgactag |
29508772 |
T |
|
| Q |
654 |
ggttgaattgagtatgttgttgttattggttgtatttcccgttagggttcatgcacttggattcactgggtcaggttttat |
734 |
Q |
| |
|
| ||||||||||| | |||||||| |||| |||||||||| |||||||| | |||||||||||||||||| ||||||||| |
|
|
| T |
29508771 |
gtttgaattgagtgtattgttgttcttggctgtatttccctttagggttgacacacttggattcactgggttaggttttat |
29508691 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 597 - 736
Target Start/End: Complemental strand, 42966573 - 42966434
Alignment:
| Q |
597 |
tcgccaacttaaagacacggttgatgctcgcaaacatcgtttgttagaattgactagggttgaattgagtatgttgttgttattggttgtatttcccgtt |
696 |
Q |
| |
|
||||||||||| |||| |||||| ||||||||||||||||||||||||||||||||||||| ||| | || || |||| || |||||||| |||| |
|
|
| T |
42966573 |
tcgccaacttatagacccggttggtgctcgcaaacatcgtttgttagaattgactagggtttaatcggacgtgctgctgttttttattgtattttacgtt |
42966474 |
T |
|
| Q |
697 |
agggttcatgcacttggattcactgggtcaggttttatat |
736 |
Q |
| |
|
|| |||||||||||| ||||||||| ||||||||||||| |
|
|
| T |
42966473 |
agaattcatgcacttgaattcactggatcaggttttatat |
42966434 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 565 - 666
Target Start/End: Complemental strand, 20647463 - 20647362
Alignment:
| Q |
565 |
cgtgattcgttctgtgttgacaattggttcactcgccaacttaaagacacggttgatgctcgcaaacatcgtttgttagaattgactagggttgaattga |
664 |
Q |
| |
|
|||||| | |||||||||||||| |||||| ||||||||||| |||| | |||| ||||| ||||||||||||||||| || ||||||||||||| || |
|
|
| T |
20647463 |
cgtgatcctttctgtgttgacaacaggttcattcgccaacttatagacccagttggtgctcacaaacatcgtttgttagtcttaactagggttgaatcga |
20647364 |
T |
|
| Q |
665 |
gt |
666 |
Q |
| |
|
|| |
|
|
| T |
20647363 |
gt |
20647362 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 492 - 643
Target Start/End: Original strand, 7604898 - 7605060
Alignment:
| Q |
492 |
ttaatgaattgtttgggtacggattgtttgagactcgaaagagtcattaatgcttgttgctga-----------gttgatggtacgtgattcgttctgtg |
580 |
Q |
| |
|
||||||||| ||| ||||||||||||||| ||||||||||||| |||||||||| |||||| ||| ||| ||| ||||| |||||||| |
|
|
| T |
7604898 |
ttaatgaatcgttggggtacggattgttttggactcgaaagagttgttaatgcttgctgctgatggtgcaaggggttaatgatacatgatttgttctgtg |
7604997 |
T |
|
| Q |
581 |
ttgacaattggttcactcgccaacttaaagacacggttgatgctcgcaaacatcgtttgttag |
643 |
Q |
| |
|
|||||| |||||||| ||| ||| ||| |||| |||| |||| |||||||||||||||||| |
|
|
| T |
7604998 |
ttgacagttggttcattcgtcaaattatagacctagttggtgcttgcaaacatcgtttgttag |
7605060 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 574 - 640
Target Start/End: Complemental strand, 6843118 - 6843052
Alignment:
| Q |
574 |
ttctgtgttgacaattggttcactcgccaacttaaagacacggttgatgctcgcaaacatcgtttgt |
640 |
Q |
| |
|
||||||||||||| | |||||| ||||||||||| |||| ||||| |||||||||||||||||||| |
|
|
| T |
6843118 |
ttctgtgttgacagtcggttcattcgccaacttatagacctggttggtgctcgcaaacatcgtttgt |
6843052 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 554 - 658
Target Start/End: Complemental strand, 9231300 - 9231196
Alignment:
| Q |
554 |
agttgatggtacgtgattcgttctgtgttgacaattggttcactcgccaacttaaagacacggttgatgctcgcaaacatcgtttgttagaattgactag |
653 |
Q |
| |
|
|||||||| |||||||| | || |||||||| | | |||||| || |||||||| |||| | |||| ||||||||||||||||||||| | ||||| || |
|
|
| T |
9231300 |
agttgatgttacgtgatcctttttgtgttgatagtcggttcattcaccaacttatagacccagttggtgctcgcaaacatcgtttgttggtcttgacaag |
9231201 |
T |
|
| Q |
654 |
ggttg |
658 |
Q |
| |
|
||||| |
|
|
| T |
9231200 |
ggttg |
9231196 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 340 - 439
Target Start/End: Complemental strand, 9231552 - 9231452
Alignment:
| Q |
340 |
tttggcttaaaaaagcgttggtgtctattgtgattgttgttaacatggg-ttgttggaacatgaatttgaccgtgttggcggtcaattcattcgccgtat |
438 |
Q |
| |
|
|||||||| ||| ||||||| || || |||||||||||| ||| | ||| || ||||||| ||||||||||||||| ||||| ||||||||||||||| |
|
|
| T |
9231552 |
tttggcttgaaagagcgttgatgcctgttgtgattgttggtaaaagggggtttttggaacgcgaatttgaccgtgttcacggtcgattcattcgccgtat |
9231453 |
T |
|
| Q |
439 |
c |
439 |
Q |
| |
|
| |
|
|
| T |
9231452 |
c |
9231452 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0054 (Bit Score: 64; Significance: 1e-27; HSPs: 1)
Name: scaffold0054
Description:
Target: scaffold0054; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 553 - 736
Target Start/End: Complemental strand, 59178 - 58995
Alignment:
| Q |
553 |
gagttgatggtacgtgattcgttctgtgttgacaattggttcactcgccaacttaaagacacggttgatgctcgcaaacatcgtttgttagaattgacta |
652 |
Q |
| |
|
||||||||||||| |||| || ||| |||||||| | ||| || || || ||| |||| ||||| |||| ||||||||||||||||||| ||||||| |
|
|
| T |
59178 |
gagttgatggtacatgatccgctctatgttgacagtcggtccattcacctgcttttagacctggttggtgctggcaaacatcgtttgttagagttgacta |
59079 |
T |
|
| Q |
653 |
gggttgaattgagtatgttgttgttattggttgtatttcccgttagggttcatgcacttggattcactgggtcaggttttatat |
736 |
Q |
| |
|
|||| |||| | || | |||||||| ||||||||||||||| |||||||| | |||||||||||||||||| || |||||||| |
|
|
| T |
59078 |
gggtagaatcgtgtgtattgttgttcttggttgtatttcccattagggttgacacacttggattcactgggtgagattttatat |
58995 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 57; Significance: 2e-23; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 626 - 702
Target Start/End: Complemental strand, 600025 - 599949
Alignment:
| Q |
626 |
gcaaacatcgtttgttagaattgactagggttgaattgagtatgttgttgttattggttgtatttcccgttagggtt |
702 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||| || | | ||||||||||||||||||||||||||||||||| |
|
|
| T |
600025 |
gcaaacatcgtttgttagacttgactagggttgaatcgaatgtattgttgttattggttgtatttcccgttagggtt |
599949 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 340 - 474
Target Start/End: Original strand, 5324932 - 5325066
Alignment:
| Q |
340 |
tttggcttaaaaaagcgttggtgtctattgtgattgttgt-taacatggg-ttgttggaacatgaatttgaccgtgttggcggtcaattcattcgccgta |
437 |
Q |
| |
|
|||||||| ||| ||| ||| ||| | ||||||||||||| ||||| ||| |||||||||| |||||||||||||||||||||| ||||||||| | || |
|
|
| T |
5324932 |
tttggcttgaaagagcattgatgtttgttgtgattgttgtgtaacagggggttgttggaacgtgaatttgaccgtgttggcggtgaattcattcacttta |
5325031 |
T |
|
| Q |
438 |
tcgatccaagtgaagactcgcacaaatccgttttgat |
474 |
Q |
| |
|
| || |||| |||||||||||||||||| |||||| |
|
|
| T |
5325032 |
ttga--gaagtaaagactcgcacaaatccgctttgat |
5325066 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 367 - 438
Target Start/End: Complemental strand, 600336 - 600264
Alignment:
| Q |
367 |
ttgtgattgttgttaacatggg-ttgttggaacatgaatttgaccgtgttggcggtcaattcattcgccgtat |
438 |
Q |
| |
|
|||||||||||| ||||||||| |||||||||| |||| |||| |||||||| |||| ||||||||||||||| |
|
|
| T |
600336 |
ttgtgattgttgctaacatggggttgttggaacgtgaacttgatcgtgttggtggtcgattcattcgccgtat |
600264 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 557 - 666
Target Start/End: Original strand, 641168 - 641277
Alignment:
| Q |
557 |
tgatggtacgtgattcgttctgtgttgacaattggttcactcgccaacttaaagacacggttgatgctcgcaaacatcgtttgttagaattgactagggt |
656 |
Q |
| |
|
|||||| ||||||| | ||||||||||||| |||||| || |||||||| | | | ||| ||||| ||||||||||||||||| || |||||||| |
|
|
| T |
641168 |
tgatggcacgtgatcctttctgtgttgacagcgggttcattcaccaacttataagcccaattggtgctcacaaacatcgtttgttagtcttaactagggt |
641267 |
T |
|
| Q |
657 |
tgaattgagt |
666 |
Q |
| |
|
||||| |||| |
|
|
| T |
641268 |
tgaatcgagt |
641277 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 54; Significance: 1e-21; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 621 - 734
Target Start/End: Original strand, 24825344 - 24825457
Alignment:
| Q |
621 |
tgctcgcaaacatcgtttgttagaattgactagggttgaattgagtatgttgttgttattggttgtatttcccgttagggttcatgcacttggattcact |
720 |
Q |
| |
|
||||||||||||||||||||||| | |||||| ||||||| ||| |||||| ||||||||||||||| ||||||||||| | |||||||||| ||| |
|
|
| T |
24825344 |
tgctcgcaaacatcgtttgttagtctggactagagttgaatcaagttagttgtttttattggttgtattttccgttagggttgacccacttggatttact |
24825443 |
T |
|
| Q |
721 |
gggtcaggttttat |
734 |
Q |
| |
|
|| ||||||||||| |
|
|
| T |
24825444 |
ggatcaggttttat |
24825457 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 386 - 438
Target Start/End: Complemental strand, 24413214 - 24413162
Alignment:
| Q |
386 |
gggttgttggaacatgaatttgaccgtgttggcggtcaattcattcgccgtat |
438 |
Q |
| |
|
||||||||||||| ||||||||| ||||||||||||||| |||||||| |||| |
|
|
| T |
24413214 |
gggttgttggaacgtgaatttgatcgtgttggcggtcaactcattcgctgtat |
24413162 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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