View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11477_low_6 (Length: 400)
Name: NF11477_low_6
Description: NF11477
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11477_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 196; Significance: 1e-106; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 185 - 384
Target Start/End: Complemental strand, 25379115 - 25378916
Alignment:
| Q |
185 |
tactactgctactagctccgtgtcagcgatctctgaggacccttcttcaaaccaatcttcctttgttttttctaacctatctcatgaaaattcatcatca |
284 |
Q |
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| T |
25379115 |
tactactgctactagctccgtgtcagcgatctctgaggacccttcttcaaaccaatcttcctttgttttttctaacctatctcatgaaaattcatcatca |
25379016 |
T |
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| Q |
285 |
ccacttatatctgaatcttatgatgatgaacttctcttcatgcaacaacttttcaaggtgaataataatgctgaacctgttaacccctactccaagaaac |
384 |
Q |
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| T |
25379015 |
ccacttatatctgaatcttatgatgatgaacttctcttcatgcagcaacttttcaaggtgaataataatgctgaacctgttaacccctactccaagaaac |
25378916 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 183; E-Value: 7e-99
Query Start/End: Original strand, 8 - 194
Target Start/End: Complemental strand, 25379325 - 25379139
Alignment:
| Q |
8 |
agcagagagaattcctggaagaactgagaatgcaataaagaatcattggaatgcaacaaaaaggagacaaaattcaaggagaaagaacaaaaggcctcaa |
107 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25379325 |
agcaaagagaattcctggaagaactgagaatgcaataaagaatcattggaatgcaacaaaaaggagacaaaattcaaggagaaagaacaaaaggcctcaa |
25379226 |
T |
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| Q |
108 |
accactgatggtaaaccacaatcttctattcttcaagactatatcaaaactttgactactcaaaaagcgttcatcagtactactgct |
194 |
Q |
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| T |
25379225 |
accactgatggtaaaccacaatcttctattcttcaagactatatcaaaactttgactactcaaaaagcgttcatcagtactactgct |
25379139 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 18 - 97
Target Start/End: Complemental strand, 29671268 - 29671189
Alignment:
| Q |
18 |
attcctggaagaactgagaatgcaataaagaatcattggaatgcaacaaaaaggagacaaaattcaaggagaaagaacaa |
97 |
Q |
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| T |
29671268 |
attccaggaagaactgaaaatgccataaaaaatcattggaatgccacaaaaagaagacaaaattcaagaagaaagaacaa |
29671189 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 24 - 67
Target Start/End: Original strand, 43866521 - 43866564
Alignment:
| Q |
24 |
ggaagaactgagaatgcaataaagaatcattggaatgcaacaaa |
67 |
Q |
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| T |
43866521 |
ggaagaactgagaatgcaataaaaaaccattggaatgcaacaaa |
43866564 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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