View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11478_high_1 (Length: 518)
Name: NF11478_high_1
Description: NF11478
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11478_high_1 |
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| [»] chr8 (4 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 467; Significance: 0; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 467; E-Value: 0
Query Start/End: Original strand, 20 - 518
Target Start/End: Original strand, 7100087 - 7100585
Alignment:
| Q |
20 |
ccctcaacaccttatctctaaggcacaggataatgacattttgtaccttatctatcatctttgttttctctatacattttagttgaatcattgtttatct |
119 |
Q |
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| T |
7100087 |
ccctcaacaccttatctctaaggcacaggataatgacattttgtaccttatctatcatctttgttttctctatacattttagttgaatcattgtttatct |
7100186 |
T |
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| Q |
120 |
tcactttcaacaacccaaaatcatagtttctggaaaattcctcagctatctcatttagtactcatgatacacacttgaaagatttgtttcacatagatgg |
219 |
Q |
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| T |
7100187 |
tcactttcaacaacccaaaatcatagtttctggaaaattcctcagctatctcatttagtactcatgatacacacttgaaagatttgtttcacatagatgg |
7100286 |
T |
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| Q |
220 |
ggccacttattatgaattcaacatgaaaagtgaaacaaataataaggcaaccaaaacctatatatatgtagagcaatccaaagacaatgataaatagagt |
319 |
Q |
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| T |
7100287 |
ggccacttattatgaattcaacatgaaaagtgaaacaaataataaggcaaccaaaacctatatacatgtagagcaatccagagacaatgataaatagagt |
7100386 |
T |
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| Q |
320 |
aaaacaaaacttacaaaaattgtgatgaatgaaagcctgagatatctgcagatttcttcaaagcagatctccactgtttcaccctaattgaattgtactt |
419 |
Q |
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| T |
7100387 |
aaaacaaaacttacaaaaattgtgatgaatgaaaaccagagatatctgcagatttcttcaaagcagatctccactgtttcaccctacttgaattgtactt |
7100486 |
T |
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| Q |
420 |
tttgtcatgttcgacaaattcatctgcataagttcccttctgatgcctcacaattgtaggatcaactttgtagaaaacaggcaataaaatctgtccatc |
518 |
Q |
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| T |
7100487 |
tttgtcatgttcaacaaattcatttgcataagttcccttctgatgcctcacaattgtaggatcaactttgtagaaaacaggcaataaaatatgtccatc |
7100585 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 325 - 518
Target Start/End: Original strand, 7086780 - 7086973
Alignment:
| Q |
325 |
aaaacttacaaaaattgtgatgaatgaaagcctgagatatctgcagatttcttcaaagcagatctccactgtttcaccctaattgaattgtactttttgt |
424 |
Q |
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| T |
7086780 |
aaaacttacaaaaattgtgatgaatgaaaccctgagatatctgcagatttcttcaaagagcttctccactgtttcaccttgttcaaattgtacttttgtt |
7086879 |
T |
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| Q |
425 |
catgttcgacaaattcatctgcataagttcccttctgatgcctcacaattgtaggatcaactttgtagaaaacaggcaataaaatctgtccatc |
518 |
Q |
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| T |
7086880 |
catgttctgcaaatgcatttgcataagtccccttctgatgcctcacaactgtagggtcaactttgtaaaaaacaggcaataaaatctgtccatc |
7086973 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 410 - 518
Target Start/End: Original strand, 7069799 - 7069907
Alignment:
| Q |
410 |
aattgtactttttgtcatgttcgacaaattcatctgcataagttcccttctgatgcctcacaattgtaggatcaactttgtagaaaacaggcaataaaat |
509 |
Q |
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| T |
7069799 |
aattgtacttttgttcatgttcaacaaatgcatctgcataagttccattttgatgcctcacaattgtgggatcaactttgtagaaaacaggcaataaaat |
7069898 |
T |
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| Q |
510 |
ctgtccatc |
518 |
Q |
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| T |
7069899 |
gtttccatc |
7069907 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 318 - 393
Target Start/End: Original strand, 7078231 - 7078306
Alignment:
| Q |
318 |
gtaaaacaaaacttacaaaaattgtgatgaatgaaagcctgagatatctgcagatttcttcaaagcagatctccac |
393 |
Q |
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| T |
7078231 |
gtaaaagaacacttacgaaaattgtgatgaatcaaatccagaaatatttgcagattgcttcaaagcagatctccac |
7078306 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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