View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11478_high_10 (Length: 245)
Name: NF11478_high_10
Description: NF11478
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11478_high_10 |
 | |
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| [»] scaffold0190 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 183; Significance: 4e-99; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 1 - 203
Target Start/End: Original strand, 8103052 - 8103254
Alignment:
| Q |
1 |
tctggaaaccatcgttcaagtgttgggagtttggatatttgattgcaacaaccaccacgtgaaatttcagcccacgaattaatgaaataccatgccgaag |
100 |
Q |
| |
|
||||||||||| ||||||||||||| |||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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|
| T |
8103052 |
tctggaaaccaacgttcaagtgttgagagtttggatgtttgattgcaacaaccaccacgtgagatttcagcccacgaattaatgaaataccatgccgaag |
8103151 |
T |
|
| Q |
101 |
ttccatcaacaaccacatggttaaaagtaaaaccaataaagatgccgtcaactaactctgtaacttgcacggcaaacaatggttgtgatgtgccttcgta |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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|
| T |
8103152 |
ttccatcaacaaccacatggttaaaagtaaaaccaataaagatgccgtcaactaactctgtcacttgcacggcaaacaatggttgtgatgtgccttcgta |
8103251 |
T |
|
| Q |
201 |
gtt |
203 |
Q |
| |
|
||| |
|
|
| T |
8103252 |
gtt |
8103254 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 3 - 200
Target Start/End: Complemental strand, 40146927 - 40146733
Alignment:
| Q |
3 |
tggaaaccatcgttcaagtgttgggagtttggatatttgattgcaacaaccaccacgtgaaatttcagcccacgaattaatgaaataccatgccgaagtt |
102 |
Q |
| |
|
||||||||| ||||| || ||| ||||||||||| ||||||||||||||||| | || |||| ||||| |||||||||||| ||||| || | |
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|
| T |
40146927 |
tggaaaccaacgttctagcgttatgagtttggatacttgattgcaacaaccac---gcgagattttcgcccatgaattaatgaaaagccatgtggactct |
40146831 |
T |
|
| Q |
103 |
ccatcaacaaccacatggttaaaagtaaaaccaataaagatgccgtcaactaactctgtaacttgcacggcaaacaatggttgtgatgtgccttcgta |
200 |
Q |
| |
|
|| ||||||||| |||||||||| ||||||||||| |||| |||||||||||||||||| |||||||| || |||||||||||||||||||||||||| |
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|
| T |
40146830 |
ccgtcaacaaccgcatggttaaatgtaaaaccaatgaagaagccgtcaactaactctgtcacttgcacagctaacaatggttgtgatgtgccttcgta |
40146733 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 57; Significance: 6e-24; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 13 - 203
Target Start/End: Original strand, 6501098 - 6501285
Alignment:
| Q |
13 |
cgttcaagtgttgggagtttggatatttgattgcaacaaccaccacgtgaaatttcagcccacgaattaatgaaataccatgccgaagttccatcaacaa |
112 |
Q |
| |
|
||||| |||| ||||||||||||||||||||| |||||||||| |||||||||||||||| ||| | || |||| ||| || ||||| || | |
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|
| T |
6501098 |
cgttctagtgatgggagtttggatatttgattacaacaaccac---gtgaaatttcagcccaggaactgataaaatgccacatggactttccaccagtga |
6501194 |
T |
|
| Q |
113 |
ccacatggttaaaagtaaaaccaataaagatgccgtcaactaactctgtaacttgcacggcaaacaatggttgtgatgtgccttcgtagtt |
203 |
Q |
| |
|
|||||||||| || |||| |||||||||| ||| ||||||||||||| |||||||| |||| |||||||| |||| ||||||||||||| |
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|
| T |
6501195 |
ccacatggttgaatctaaacccaataaagacaccgccaactaactctgtcacttgcactgcaagcaatggttttgatatgccttcgtagtt |
6501285 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 127 - 203
Target Start/End: Original strand, 11969610 - 11969686
Alignment:
| Q |
127 |
gtaaaaccaataaagatgccgtcaactaactctgtaacttgcacggcaaacaatggttgtgatgtgccttcgtagtt |
203 |
Q |
| |
|
||||| ||||| |||||||| |||||||||||||| ||||| || |||| |||||| | |||||| ||||| ||||| |
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|
| T |
11969610 |
gtaaagccaatgaagatgccatcaactaactctgttacttggactgcaagcaatggctctgatgtcccttcatagtt |
11969686 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 54; Significance: 4e-22; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 54 - 203
Target Start/End: Complemental strand, 7655630 - 7655481
Alignment:
| Q |
54 |
accacgtgaaatttcagcccacgaattaatgaaataccatgccgaagttccatcaacaaccacatggttaaaagtaaaaccaataaagatgccgtcaact |
153 |
Q |
| |
|
||||||||| ||||||||||||||||| ||||||| ||| | || ||| ||| | || |||||||| ||| |||| ||||| ||||||||||||||| |
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|
| T |
7655630 |
accacgtgacatttcagcccacgaattgatgaaatgccacgtggactgtccgtcagctacgacatggttgaaattaaagccaatgaagatgccgtcaact |
7655531 |
T |
|
| Q |
154 |
aactctgtaacttgcacggcaaacaatggttgtgatgtgccttcgtagtt |
203 |
Q |
| |
|
| ||| || ||||| || || |||||||||| |||||||||||||||||| |
|
|
| T |
7655530 |
agctccgtgacttgaacagccaacaatggttttgatgtgccttcgtagtt |
7655481 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 3 - 201
Target Start/End: Original strand, 7629199 - 7629397
Alignment:
| Q |
3 |
tggaaaccatcgttcaagtgttgggagtttggatatttgattgcaacaaccaccacgtgaaatttcagcccacgaattaatgaaataccatgccgaagtt |
102 |
Q |
| |
|
||||||||| |||||| |||||| |||| |||||||||| ||||| || |||||| ||||||||||| ||||| ||||||| ||| | || || |
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|
| T |
7629199 |
tggaaaccaacgttcagatgttggaggtttagatatttgatgatgacaacaactacgtgagatttcagcccatgaattgatgaaatgccacacggacttt |
7629298 |
T |
|
| Q |
103 |
ccatcaacaaccacatggttaaaagtaaaaccaataaagatgccgtcaactaactctgtaacttgcacggcaaacaatggttgtgatgtgccttcgtag |
201 |
Q |
| |
|
|| |||||||| |||||||| || || |||||||||||| |||||||||| ||| || ||||| || || |||||||||| ||| |||||||||||| |
|
|
| T |
7629299 |
ccgtcaacaacaacatggttgaatgtgcaaccaataaagacaccgtcaactagctccgttacttgaacagccaacaatggttttgacgtgccttcgtag |
7629397 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 3 - 197
Target Start/End: Original strand, 7637645 - 7637839
Alignment:
| Q |
3 |
tggaaaccatcgttcaagtgttgggagtttggatatttgattgcaacaaccaccacgtgaaatttcagcccacgaattaatgaaataccatgccgaagtt |
102 |
Q |
| |
|
||||||||| || || ||||||||| |||| |||||||||| ||||| || |||||| ||||||||||| ||||| ||||||| ||| | || || |
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|
| T |
7637645 |
tggaaaccaacgctctagtgttgggggtttagatatttgatgatgacaacaactacgtgagatttcagcccaggaattgatgaaatgccacacggacttt |
7637744 |
T |
|
| Q |
103 |
ccatcaacaaccacatggttaaaagtaaaaccaataaagatgccgtcaactaactctgtaacttgcacggcaaacaatggttgtgatgtgccttc |
197 |
Q |
| |
|
|| ||||| || ||||||||||| | ||||||| || || |||||||||| ||| || ||||| || || |||||||||| |||||||||||| |
|
|
| T |
7637745 |
ccgtcaacgacaacatggttaaatgagcaaccaatgaaaataccgtcaactagctccgttacttgaactgccaacaatggttttgatgtgccttc |
7637839 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 3 - 203
Target Start/End: Original strand, 7606814 - 7607014
Alignment:
| Q |
3 |
tggaaaccatcgttcaagtgttgggagtttggatatttgattgcaacaaccaccacgtgaaatttcagcccacgaattaatgaaataccatgccgaagtt |
102 |
Q |
| |
|
||||||||| || || ||||||||| ||||||||||||||| | ||||| ||| ||||| ||||||||||| ||||| ||||||| ||| | || || |
|
|
| T |
7606814 |
tggaaaccaacgctctagtgttgggggtttggatatttgatcaccacaacaaccgcgtgatatttcagcccatgaattgatgaaatgccacacggacttt |
7606913 |
T |
|
| Q |
103 |
ccatcaacaaccacatggttaaaagtaaaaccaataaagatgccgtcaactaactctgtaacttgcacggcaaacaatggttgtgatgtgccttcgtagt |
202 |
Q |
| |
|
|| ||||| || |||||||| || | ||||||| || || |||||||||| ||| || | ||| || || |||||||||| ||| |||||||| |||| |
|
|
| T |
7606914 |
ccgtcaacgacaacatggttgaaggagcaaccaatgaaaataccgtcaactagctccgttatttgaacagccaacaatggttttgacgtgccttcatagt |
7607013 |
T |
|
| Q |
203 |
t |
203 |
Q |
| |
|
| |
|
|
| T |
7607014 |
t |
7607014 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 3 - 201
Target Start/End: Original strand, 7615810 - 7616008
Alignment:
| Q |
3 |
tggaaaccatcgttcaagtgttgggagtttggatatttgattgcaacaaccaccacgtgaaatttcagcccacgaattaatgaaataccatgccgaagtt |
102 |
Q |
| |
|
||||||||| || || ||||||||| |||| |||||||||| ||||| || |||||| ||||||||||| ||||| ||||||| ||| | || | |
|
|
| T |
7615810 |
tggaaaccaacgctctagtgttgggggtttagatatttgatgatgacaacaactacgtgatatttcagcccatgaattgatgaaatgccacacagactct |
7615909 |
T |
|
| Q |
103 |
ccatcaacaaccacatggttaaaagtaaaaccaataaagatgccgtcaactaactctgtaacttgcacggcaaacaatggttgtgatgtgccttcgtag |
201 |
Q |
| |
|
|| ||||| || |||||||| || | |||||||||| || |||||||||| ||| || ||||| || || ||||| |||| ||| |||||||||||| |
|
|
| T |
7615910 |
ccgtcaacgacaacatggttgaacgagcaaccaataaaaataccgtcaactagctccgttacttgaactgccaacaacggttttgaggtgccttcgtag |
7616008 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 114 - 203
Target Start/End: Original strand, 7399159 - 7399248
Alignment:
| Q |
114 |
cacatggttaaaagtaaaaccaataaagatgccgtcaactaactctgtaacttgcacggcaaacaatggttgtgatgtgccttcgtagtt |
203 |
Q |
| |
|
||||||||||| ||||||||||| ||||| || || | ||||||||| ||||| || |||| | |||||||||||| ||||||||||| |
|
|
| T |
7399159 |
cacatggttaattgtaaaaccaatgaagataccatcgattaactctgttacttgtactgcaagtagtggttgtgatgtcccttcgtagtt |
7399248 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 113 - 196
Target Start/End: Original strand, 39075927 - 39076010
Alignment:
| Q |
113 |
ccacatggttaaaagtaaaaccaataaagatgccgtcaactaactctgtaacttgcacggcaaacaatggttgtgatgtgcctt |
196 |
Q |
| |
|
|||||||||||| | ||||||||| ||||| || || | ||||||||| ||||| || |||| ||||||||||||||||||| |
|
|
| T |
39075927 |
ccacatggttaattgcaaaaccaatgaagataccatcgattaactctgttacttgtactgcaagtaatggttgtgatgtgcctt |
39076010 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0190 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: scaffold0190
Description:
Target: scaffold0190; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 64 - 203
Target Start/End: Original strand, 5071 - 5210
Alignment:
| Q |
64 |
atttcagcccacgaattaatgaaataccatgccgaagttccatcaacaaccacatggttaaaagtaaaaccaataaagatgccgtcaactaactctgtaa |
163 |
Q |
| |
|
||||||||||||||||| ||||||| ||| ||| || |||||||||| ||| ||||||| || || ||||| |||||||||||||||||||| || | |
|
|
| T |
5071 |
atttcagcccacgaattgatgaaatgccaaaacgacgtaccatcaacaatcacgtggttaactgtgaagccaatgaagatgccgtcaactaactccgtta |
5170 |
T |
|
| Q |
164 |
cttgcacggcaaacaatggttgtgatgtgccttcgtagtt |
203 |
Q |
| |
|
|||| | |||| |||||||||||||| ||||||||||| |
|
|
| T |
5171 |
cttggattgcaagtaatggttgtgatgttccttcgtagtt |
5210 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 3 - 184
Target Start/End: Complemental strand, 8910707 - 8910526
Alignment:
| Q |
3 |
tggaaaccatcgttcaagtgttgggagtttggatatttgattgcaacaaccaccacgtgaaatttcagcccacgaattaatgaaataccatgccgaagtt |
102 |
Q |
| |
|
||||||||| || || ||||||||| |||| |||||||||| ||||| || |||||| ||||||||||| ||||||||||||| ||| | || || |
|
|
| T |
8910707 |
tggaaaccaacgctctagtgttgggggtttagatatttgataatgacaacaactacgtgagatttcagcccaggaattaatgaaatgccacacggacttt |
8910608 |
T |
|
| Q |
103 |
ccatcaacaaccacatggttaaaagtaaaaccaataaagatgccgtcaactaactctgtaacttgcacggcaaacaatggtt |
184 |
Q |
| |
|
|| ||||| || ||||||||||| | ||||||| || || |||||||||| ||| || ||||| || || |||||||||| |
|
|
| T |
8910607 |
ccgtcaacgacaacatggttaaatgagcaaccaatgaaaataccgtcaactagctccgttacttgaactgccaacaatggtt |
8910526 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 4 - 201
Target Start/End: Complemental strand, 8935641 - 8935444
Alignment:
| Q |
4 |
ggaaaccatcgttcaagtgttgggagtttggatatttgattgcaacaaccaccacgtgaaatttcagcccacgaattaatgaaataccatgccgaagttc |
103 |
Q |
| |
|
|||||||| ||||| |||||||| |||| |||||||||| ||||| || |||||| ||||||||||| ||||| ||||||| ||| | || ||| |
|
|
| T |
8935641 |
ggaaaccaacgttctagtgttggaggtttagatatttgatgatgacaacaactacgtgagatttcagcccaagaattgatgaaatgccacacagactttc |
8935542 |
T |
|
| Q |
104 |
catcaacaaccacatggttaaaagtaaaaccaataaagatgccgtcaactaactctgtaacttgcacggcaaacaatggttgtgatgtgccttcgtag |
201 |
Q |
| |
|
| |||| || | |||||||| | ||||||| || || ||||||| |||||| || ||||| || || |||||||||| |||||||||||||||| |
|
|
| T |
8935541 |
cgtcaatgacagcgtggttaaatgagcaaccaatgaaaataccgtcaattaactcagttacttgaactgccaacaatggttttgatgtgccttcgtag |
8935444 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 131 - 201
Target Start/End: Complemental strand, 8934573 - 8934503
Alignment:
| Q |
131 |
aaccaataaagatgccgtcaactaactctgtaacttgcacggcaaacaatggttgtgatgtgccttcgtag |
201 |
Q |
| |
|
||||||| || || ||||||| |||||| || ||||| || || |||||||||| |||||||||||||||| |
|
|
| T |
8934573 |
aaccaatgaaaataccgtcaattaactccgttacttgaactgccaacaatggttttgatgtgccttcgtag |
8934503 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 132 - 203
Target Start/End: Original strand, 34174825 - 34174896
Alignment:
| Q |
132 |
accaataaagatgccgtcaactaactctgtaacttgcacggcaaacaatggttgtgatgtgccttcgtagtt |
203 |
Q |
| |
|
|||||| ||||| || |||| ||||||||| ||||| || |||| ||||||||||||||| |||| |||||| |
|
|
| T |
34174825 |
accaatgaagataccatcaattaactctgttacttgaactgcaagcaatggttgtgatgtacctttgtagtt |
34174896 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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