View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11478_low_11 (Length: 240)
Name: NF11478_low_11
Description: NF11478
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11478_low_11 |
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| [»] chr6 (1 HSPs) |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 173; Significance: 4e-93; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 17 - 240
Target Start/End: Complemental strand, 660599 - 660377
Alignment:
| Q |
17 |
aaatttgtggtaaagcatttattgtcatttctgcaggttatcttaaatgtaaagtgcatacaaggattggttatagcaagtgaagaagctaaaagctaaa |
116 |
Q |
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| T |
660599 |
aaatttgtggtaaagcatttattgtcatttctgcaggttatcttaaatgtaaagtgcatacaaggattggttatagcaagtgaagaagctaaaagctaaa |
660500 |
T |
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| Q |
117 |
tacattgtaaagct-ggaannnnnnngcttctgcttgctagagacaaggggtgtatcatatattctactattgatgattcgatgagcatatacaaattct |
215 |
Q |
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| T |
660499 |
tacattgtaaagctgggattttttttgcttctgcttgctagagacaaggggtgtatcatatattctactattgatgatttgatgagc--atacaaattct |
660402 |
T |
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| Q |
216 |
actgtcgtgttttgttgtaaacaat |
240 |
Q |
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|||||| |||||||||||||||||| |
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| T |
660401 |
actgtcatgttttgttgtaaacaat |
660377 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 130; Significance: 2e-67; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 17 - 240
Target Start/End: Complemental strand, 4634269 - 4634041
Alignment:
| Q |
17 |
aaatttgtggtaaagcatttattgtcatttctgcaggttatcttaaatgtaaagtgcatacaaggattggttatagcaagtgaagaagctaaaagctaaa |
116 |
Q |
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||||||||||||| |||||||||||||||| |||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
4634269 |
aaatttgtggtaaggcatttattgtcatttttgcaggttatttgaaatgtaaagtgcatacaaggattggttatagcaagtgaagaagctaaaagttaaa |
4634170 |
T |
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| Q |
117 |
tacattgtaaagctggaa------nnnnnnngcttctgcttgctagagacaaggggtgtatcatatattctactattgatgattcgatgagcatatacaa |
210 |
Q |
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| T |
4634169 |
tacattgtaaagctgggatttttttttttttgcttctgcttgctagaaacaaggggtgtgtgatatattctactattgatgatttgatgagcat-tacaa |
4634071 |
T |
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| Q |
211 |
attctactgtcgtgttttgttgtaaacaat |
240 |
Q |
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| T |
4634070 |
attctactgtcatgttttgatgtaaacaat |
4634041 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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