View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11478_low_12 (Length: 239)
Name: NF11478_low_12
Description: NF11478
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11478_low_12 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 17471202 - 17471424
Alignment:
| Q |
1 |
agctctatgtattctggtaacatgtttgtcgagaagatttacggtttcatacatgtctaaacctagttgtttgcgtttgtatgttactagtttcactata |
100 |
Q |
| |
|
|||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17471202 |
agctctatgtattctggtgacatgtttgtctagaagatttacggtttcatacatgtctaaacctagttgtttgcgtttgtatgttactagtttcactata |
17471301 |
T |
|
| Q |
101 |
gattgaggcagtgatttttcaagagtggttatatcaacattcgattcaactattatatctgtacatcttgttagtagtttatcacatgttttaccacaaa |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
17471302 |
gattgaggcagtgatttttcaagagtggttatatcaacattggattcaactattatatctgtacatctttttagtagtttatcacatgttttaccacaaa |
17471401 |
T |
|
| Q |
201 |
tgtttgctatagaaagaaccacc |
223 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
17471402 |
tgtttgctatagaaagaaccacc |
17471424 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University