View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11478_low_2 (Length: 344)

Name: NF11478_low_2
Description: NF11478
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11478_low_2
NF11478_low_2
[»] chr8 (6 HSPs)
chr8 (11-337)||(7100617-7100945)
chr8 (79-344)||(7086998-7087263)
chr8 (87-337)||(7069939-7070189)
chr8 (11-70)||(7087320-7087379)
chr8 (267-343)||(7028695-7028771)
chr8 (267-343)||(7035397-7035473)
[»] chr4 (10 HSPs)
chr4 (282-343)||(4220789-4220850)
chr4 (261-343)||(4003287-4003369)
chr4 (282-343)||(3811978-3812039)
chr4 (282-343)||(3821551-3821612)
chr4 (259-343)||(3953034-3953118)
chr4 (252-343)||(3988176-3988267)
chr4 (282-344)||(3825805-3825867)
chr4 (282-344)||(4019562-4019624)
chr4 (308-344)||(3805838-3805874)
chr4 (282-342)||(4011767-4011827)
[»] chr5 (1 HSPs)
chr5 (252-343)||(13399128-13399219)
[»] chr6 (1 HSPs)
chr6 (295-332)||(12782174-12782211)


Alignment Details
Target: chr8 (Bit Score: 266; Significance: 1e-148; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 11 - 337
Target Start/End: Complemental strand, 7100945 - 7100617
Alignment:
Q  11 caaaggaagaaccacaatgcacaataataatcttgtattttttgtttatctcttgtttatcagtttgacatcggaatttcaatgttctgttcctcaaagt 110  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||| |||||||||| ||    
T  7100945 caaaggaagaaccacaatgcacaataataatcttgtattttttgtttatctcttgtgtatctgtttgacatcggaatttcaatgttttgttcctcaacgt 7100846  T
Q  111 ga--caagcatgatgtttttgttagctttagaggtctagatatccgtgaaggttttcttagccatttggttgaagctctatctcgaaagaaaattgtttt 208  Q
    ||  |||| ||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  7100845 gagacaagtatgatgtctttgttagctttagaggtctagatatccttgaaggttttcttagccatttggttgaagctttatctcgaaagaaaattgtttt 7100746  T
Q  209 ctttgtagacaataagcttagaaaaggtgatgaaatagcagaatcacttcttgaagctattgaaacatccttgatttctttggtcatattctctcaaaac 308  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||    
T  7100745 ctttgtagacaataagcttagaaaaggtgatgaaatagcacaatcacttcttgaaactattgaaacatcgttgatttctttggtcatattctctcaaaac 7100646  T
Q  309 tatgcttcttcatcttggtgtttggatga 337  Q
    ||||||||||| || ||||||||||||||    
T  7100645 tatgcttcttcgtcgtggtgtttggatga 7100617  T

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Target: chr8; HSP #2
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 79 - 344
Target Start/End: Complemental strand, 7087263 - 7086998
Alignment:
Q  79 catcggaatttcaatgttctgttcctcaaagtgacaagcatgatgtttttgttagctttagaggtctagatatccgtgaaggttttcttagccatttggt 178  Q
    ||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||| || |||||||||||||||||||| ||||||||    
T  7087263 catcggaatttcaatgttcagttcctcaaagtgacaagcatgatgtctttgttagctttagaggtctggacatccgtgaaggttttcttagtcatttggt 7087164  T
Q  179 tgaagctctatctcgaaagaaaattgttttctttgtagacaataagcttagaaaaggtgatgaaatagcagaatcacttcttgaagctattgaaacatcc 278  Q
    ||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||     
T  7087163 tgaagctttatctcgaaaggaaattgttttctttgtagacaataagcttagaaaaggtgatgaaatagcacaatcactttttgaagctattgaaacatct 7087064  T
Q  279 ttgatttctttggtcatattctctcaaaactatgcttcttcatcttggtgtttggatgaacttgtc 344  Q
    |  ||||| || ||||||||||||||||||||||||||||||   |||||||||||||| ||||||    
T  7087063 tcaatttcattagtcatattctctcaaaactatgcttcttcaaaatggtgtttggatgagcttgtc 7086998  T

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Target: chr8; HSP #3
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 87 - 337
Target Start/End: Complemental strand, 7070189 - 7069939
Alignment:
Q  87 tttcaatgttctgttcctcaaagtgacaagcatgatgtttttgttagctttagaggtctagatatccgtgaaggttttcttagccatttggttgaagctc 186  Q
    ||||||| |||||||||||||| | ||||| ||||||| |||||||||||| | |||| |||||||||||||| |||||||   |||||| || |||||     
T  7070189 tttcaatcttctgttcctcaaattcacaagtatgatgtctttgttagctttcggggtccagatatccgtgaagtttttcttcctcatttgattaaagctt 7070090  T
Q  187 tatctcgaaagaaaattgttttctttgtagacaataagcttagaaaaggtgatgaaatagcagaatcacttcttgaagctattgaaacatccttgatttc 286  Q
    | |||| |||||||||||||| |||||||||| ||||||||| ||||||  |||||||| || | |||||| ||||||| ||||||||||| |  |||||    
T  7070089 tttctcaaaagaaaattgtttactttgtagactataagcttacaaaaggaaatgaaatatcacagtcactttttgaagcaattgaaacatcttcaatttc 7069990  T
Q  287 tttggtcatattctctcaaaactatgcttcttcatcttggtgtttggatga 337  Q
     || |||||||||||||||||||||||||||||||||||||||||||||||    
T  7069989 attagtcatattctctcaaaactatgcttcttcatcttggtgtttggatga 7069939  T

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Target: chr8; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 11 - 70
Target Start/End: Complemental strand, 7087379 - 7087320
Alignment:
Q  11 caaaggaagaaccacaatgcacaataataatcttgtattttttgtttatctcttgtttat 70  Q
    |||||||||| ||||||||||||||| |||||||||||||||||||| ||||||||||||    
T  7087379 caaaggaagatccacaatgcacaatattaatcttgtattttttgtttgtctcttgtttat 7087320  T

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Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 267 - 343
Target Start/End: Original strand, 7028695 - 7028771
Alignment:
Q  267 attgaaacatccttgatttctttggtcatattctctcaaaactatgcttcttcatcttggtgtttggatgaacttgt 343  Q
    ||||||| ||| |||||||| ||||||||||| |||| ||||| ||| ||||||  |||||||||||| || |||||    
T  7028695 attgaaaaatcattgatttcattggtcatattttctccaaactttgcatcttcacattggtgtttggacgagcttgt 7028771  T

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Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 267 - 343
Target Start/End: Original strand, 7035397 - 7035473
Alignment:
Q  267 attgaaacatccttgatttctttggtcatattctctcaaaactatgcttcttcatcttggtgtttggatgaacttgt 343  Q
    ||||||| ||| |||||||| ||||||||||| || | ||||| ||| ||||||  ||||||||||||||| |||||    
T  7035397 attgaaaaatcattgatttcattggtcatattttcaccaaactttgcatcttcacattggtgtttggatgagcttgt 7035473  T

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Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 282 - 343
Target Start/End: Complemental strand, 4220850 - 4220789
Alignment:
Q  282 atttctttggtcatattctctcaaaactatgcttcttcatcttggtgtttggatgaacttgt 343  Q
    ||||| ||||||||||||||| |||||||||||||||||  ||||||||| || ||||||||    
T  4220850 atttcattggtcatattctctgaaaactatgcttcttcacattggtgtttagaagaacttgt 4220789  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 261 - 343
Target Start/End: Complemental strand, 4003369 - 4003287
Alignment:
Q  261 gaagctattgaaacatccttgatttctttggtcatattctctcaaaactatgcttcttcatcttggtgtttggatgaacttgt 343  Q
    ||||| ||||||  ||| || ||||| ||||||||||||||  |||||||||||||||||  ||||||||| || ||||||||    
T  4003369 gaagcaattgaaggatcattcatttcattggtcatattctcagaaaactatgcttcttcacattggtgtttagaagaacttgt 4003287  T

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Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 282 - 343
Target Start/End: Complemental strand, 3812039 - 3811978
Alignment:
Q  282 atttctttggtcatattctctcaaaactatgcttcttcatcttggtgtttggatgaacttgt 343  Q
    ||||| ||||||||||||||  |||||||||||||||||  ||||||||| ||||| |||||    
T  3812039 atttcattggtcatattctcagaaaactatgcttcttcacattggtgtttagatgagcttgt 3811978  T

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Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 282 - 343
Target Start/End: Complemental strand, 3821612 - 3821551
Alignment:
Q  282 atttctttggtcatattctctcaaaactatgcttcttcatcttggtgtttggatgaacttgt 343  Q
    ||||| ||||||||||||||  |||||||||||||||||  ||||||||| ||||| |||||    
T  3821612 atttcattggtcatattctcaaaaaactatgcttcttcacattggtgtttagatgagcttgt 3821551  T

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Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 259 - 343
Target Start/End: Original strand, 3953034 - 3953118
Alignment:
Q  259 ttgaagctattgaaacatccttgatttctttggtcatattctctcaaaactatgcttcttcatcttggtgtttggatgaacttgt 343  Q
    ||||||| ||||||  ||| || ||||| ||| ||||||||||  |||||||||||||||||  ||||||||| || ||||||||    
T  3953034 ttgaagcaattgaaggatcgttcatttcattgatcatattctcagaaaactatgcttcttcacgttggtgtttagaagaacttgt 3953118  T

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Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 252 - 343
Target Start/End: Complemental strand, 3988267 - 3988176
Alignment:
Q  252 tcacttcttgaagctattgaaacatccttgatttctttggtcatattctctcaaaactatgcttcttcatcttggtgtttggatgaacttgt 343  Q
    |||||| ||||||| ||||||   || || ||||| ||||||||||||||  |||| ||| ||||||||  ||||||||| |||||||||||    
T  3988267 tcacttgttgaagcaattgaaggctcgttaatttcattggtcatattctcaaaaaattattcttcttcacattggtgtttagatgaacttgt 3988176  T

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Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 282 - 344
Target Start/End: Complemental strand, 3825867 - 3825805
Alignment:
Q  282 atttctttggtcatattctctcaaaactatgcttcttcatcttggtgtttggatgaacttgtc 344  Q
    ||||| ||| |||||||||| ||| ||||||||||||||| ||||||||| || |||| ||||    
T  3825867 atttccttgatcatattctcacaagactatgcttcttcatgttggtgtttagaagaacatgtc 3825805  T

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Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 282 - 344
Target Start/End: Complemental strand, 4019624 - 4019562
Alignment:
Q  282 atttctttggtcatattctctcaaaactatgcttcttcatcttggtgtttggatgaacttgtc 344  Q
    ||||| ||| |||||||||| ||| ||||||||||||||   ||||||||||| |||||||||    
T  4019624 atttccttgatcatattctcacaagactatgcttcttcacgctggtgtttggaagaacttgtc 4019562  T

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Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 308 - 344
Target Start/End: Complemental strand, 3805874 - 3805838
Alignment:
Q  308 ctatgcttcttcatcttggtgtttggatgaacttgtc 344  Q
    |||||||||||||| |||||||||||| |||||||||    
T  3805874 ctatgcttcttcatgttggtgtttggacgaacttgtc 3805838  T

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Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 282 - 342
Target Start/End: Complemental strand, 4011827 - 4011767
Alignment:
Q  282 atttctttggtcatattctctcaaaactatgcttcttcatcttggtgtttggatgaacttg 342  Q
    ||||| ||||||||||||||  |||||||||||| ||||  ||||||||| || |||||||    
T  4011827 atttcattggtcatattctcataaaactatgcttgttcacattggtgtttagaagaacttg 4011767  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 252 - 343
Target Start/End: Complemental strand, 13399219 - 13399128
Alignment:
Q  252 tcacttcttgaagctattgaaacatccttgatttctttggtcatattctctcaaaactatgcttcttcatcttggtgtttggatgaacttgt 343  Q
    |||||| ||||||| || |||  ||| || ||||| ||| ||||||||||  |||||||||||||||||  ||||||||| || ||||||||    
T  13399219 tcactttttgaagcaatcgaaggatcatttatttcattgatcatattctcagaaaactatgcttcttcacgttggtgtttagaagaacttgt 13399128  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 295 - 332
Target Start/End: Complemental strand, 12782211 - 12782174
Alignment:
Q  295 tattctctcaaaactatgcttcttcatcttggtgtttg 332  Q
    |||||||| ||||||||||||||||| |||||||||||    
T  12782211 tattctctaaaaactatgcttcttcaacttggtgtttg 12782174  T

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