View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11478_low_3 (Length: 318)
Name: NF11478_low_3
Description: NF11478
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11478_low_3 |
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| [»] chr2 (5 HSPs) |
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| [»] scaffold0236 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 301; Significance: 1e-169; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 14 - 318
Target Start/End: Original strand, 43734853 - 43735157
Alignment:
| Q |
14 |
agggtgttggaaagcttcataagttggtacatagcttctcaagctattgctgtagttttttccatgacagcgataatctatatccaagatcatcttggtt |
113 |
Q |
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| T |
43734853 |
agggtgttggaaagcttcataagttggtacatagcttctcaagctattgctgtagttttttccatgacagcgataatctatatccaagatcatcttggtt |
43734952 |
T |
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| Q |
114 |
ggaaactaggttttggtgttccagctgccgttatgttcttgtcaactttgttgttcttccttgtttcgtcgcgttatgtcaagaacaaaccacatagcag |
213 |
Q |
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| T |
43734953 |
ggaaactaggttttggtgttccagctgccgttatgttcttgtcaactttgttgttcttccttgtttcgtcgcgttatgtcaagaacaaaccacatagcag |
43735052 |
T |
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| Q |
214 |
catgcttagtggctttgctcaagtaatagttgtttcctataagaacagaaatctctcacttccacctaaggattcatttggaatgtatcaccaaaacaac |
313 |
Q |
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| T |
43735053 |
catgcttagtggctttgctcaagtaatagttgtttcctataagaacagaaatctctcacttccacctaaggattcagttggaatgtatcaccaaaacaac |
43735152 |
T |
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| Q |
314 |
gactc |
318 |
Q |
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||||| |
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| T |
43735153 |
gactc |
43735157 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 92 - 138
Target Start/End: Original strand, 43702735 - 43702781
Alignment:
| Q |
92 |
tatatccaagatcatcttggttggaaactaggttttggtgttccagc |
138 |
Q |
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| T |
43702735 |
tatatccaagatcatcttggttggaaagttggttttggtgttccagc |
43702781 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 92 - 138
Target Start/End: Original strand, 43686235 - 43686281
Alignment:
| Q |
92 |
tatatccaagatcatcttggttggaaactaggttttggtgttccagc |
138 |
Q |
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| T |
43686235 |
tatatccaagatcatcttggttggagaattggttttggtgttccagc |
43686281 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 92 - 138
Target Start/End: Original strand, 43713559 - 43713605
Alignment:
| Q |
92 |
tatatccaagatcatcttggttggaaactaggttttggtgttccagc |
138 |
Q |
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| T |
43713559 |
tatatccaagatcatcttggttggagaattggttttggtgttccagc |
43713605 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 92 - 138
Target Start/End: Original strand, 43727461 - 43727507
Alignment:
| Q |
92 |
tatatccaagatcatcttggttggaaactaggttttggtgttccagc |
138 |
Q |
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| T |
43727461 |
tatatccaagagcatcttggttggaaaattggttttggtgttccagc |
43727507 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 92 - 162
Target Start/End: Original strand, 2689835 - 2689905
Alignment:
| Q |
92 |
tatatccaagatcatcttggttggaaactaggttttggtgttccagctgccgttatgttcttgtcaacttt |
162 |
Q |
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| T |
2689835 |
tatatccaagatcatcttggatggaaacttggttttggtgttccagcagcacttatgttcttttccacttt |
2689905 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0236 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0236
Description:
Target: scaffold0236; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 92 - 138
Target Start/End: Complemental strand, 24461 - 24415
Alignment:
| Q |
92 |
tatatccaagatcatcttggttggaaactaggttttggtgttccagc |
138 |
Q |
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| T |
24461 |
tatatccaagatcatcttggttggaaaattggttttggagttccagc |
24415 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 92 - 138
Target Start/End: Original strand, 25273261 - 25273307
Alignment:
| Q |
92 |
tatatccaagatcatcttggttggaaactaggttttggtgttccagc |
138 |
Q |
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| T |
25273261 |
tatatccaagatcatcttggttggaaaattggttttggagttccagc |
25273307 |
T |
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