View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11478_low_4 (Length: 287)
Name: NF11478_low_4
Description: NF11478
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11478_low_4 |
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Alignment Details
Target: chr6 (Bit Score: 260; Significance: 1e-145; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 7 - 270
Target Start/End: Complemental strand, 6351148 - 6350885
Alignment:
| Q |
7 |
ggacgttggaatatgggctatgcaatcaaaattgttacaaacgggaatattgaaagatgcagttatggcagttacaaagagaacattctatgaacatttt |
106 |
Q |
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| T |
6351148 |
ggacgttggaatatgggctatgcaatcaaaattgttacaaacgggaatattgaaagatgcagttatggcagttacaaagagaacattctatgaacatttt |
6351049 |
T |
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| Q |
107 |
tgtgctggagaagatgctattactgctggaaagagtataagggctgttaatgaagctggcttacgtggcatgcttgtttttggtgttgaagatgcacatg |
206 |
Q |
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| T |
6351048 |
tgtgctggagaagatgctattactgctggaaagagtataaggtctgttaatgaagctggcttacgtggcatgcttgtttttggtgttgaagatgcacatg |
6350949 |
T |
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| Q |
207 |
agaatgatggttgtgatcgtaatcttaaagggtttcttcatactgttgatgttagcaaatcact |
270 |
Q |
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| T |
6350948 |
agaatgatggttgtgatcgtaatcttaaagggtttcttcatactgttgatgttagcaaatcact |
6350885 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 7 - 270
Target Start/End: Complemental strand, 6328605 - 6328342
Alignment:
| Q |
7 |
ggacgttggaatatgggctatgcaatcaaaattgttacaaacgggaatattgaaagatgcagttatggcagttacaaagagaacattctatgaacatttt |
106 |
Q |
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| T |
6328605 |
ggacgttggaatatgggctatgcaatcaaaattgttacaaacgggaatcttgaaagatgcagttatggcagttacaaagagaacattctatgaacatttt |
6328506 |
T |
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| Q |
107 |
tgtgctggagaagatgctattactgctggaaagagtataagggctgttaatgaagctggcttacgtggcatgcttgtttttggtgttgaagatgcacatg |
206 |
Q |
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| T |
6328505 |
tgtgctggagaagatgctattactgctggaaagagtataaggtctgttaatgaagctggcttacgtggcatgcttgtttttggtgttgaagatgcacatg |
6328406 |
T |
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| Q |
207 |
agaatgatggttgtgatcgtaatcttaaagggtttcttcatactgttgatgttagcaaatcact |
270 |
Q |
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| T |
6328405 |
agaatgatggttgtgatcgtaatcttaaagggtttcttcatactgttgatgttagcaaatcact |
6328342 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 7 - 270
Target Start/End: Complemental strand, 6336163 - 6335900
Alignment:
| Q |
7 |
ggacgttggaatatgggctatgcaatcaaaattgttacaaacgggaatattgaaagatgcagttatggcagttacaaagagaacattctatgaacatttt |
106 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6336163 |
ggacgttggaatatgggctatgcaatcaaaattgttacaaacgggaatcttgaaagatgcagttatggcagttacaaagagaacattctatgaacatttt |
6336064 |
T |
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| Q |
107 |
tgtgctggagaagatgctattactgctggaaagagtataagggctgttaatgaagctggcttacgtggcatgcttgtttttggtgttgaagatgcacatg |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6336063 |
tgtgctggagaagatgctattactgctggaaagagtataaggtctgttaatgaagctggcttacgtggcatgcttgtttttggtgttgaagatgcacatg |
6335964 |
T |
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| Q |
207 |
agaatgatggttgtgatcgtaatcttaaagggtttcttcatactgttgatgttagcaaatcact |
270 |
Q |
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| T |
6335963 |
agaatgatggttgtgatcgtaatcttaaagggtttcttcatactgttgatgttagcaaatcact |
6335900 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 101 - 263
Target Start/End: Original strand, 6488955 - 6489117
Alignment:
| Q |
101 |
catttttgtgctggagaagatgctattactgctggaaagagtataagggctgttaatgaagctggcttacgtggcatgcttgtttttggtgttgaagatg |
200 |
Q |
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||||||||||| |||||||||||||| || |||||||| ||||| | | |||||||| || |||||||| ||||| |||| ||| |||||||||| |
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| T |
6488955 |
catttttgtgccggagaagatgctatcaccgctggaaaaagtattgccgggttgaatgaagcaggtttacgtggaatgctggtttatggcgttgaagatg |
6489054 |
T |
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| Q |
201 |
cacatgagaatgatggttgtgatcgtaatcttaaagggtttcttcatactgttgatgttagca |
263 |
Q |
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| T |
6489055 |
ctcatgataatgctggctgtgatcgcaatctcaaaggttttcttcacaccgttgatgtcagca |
6489117 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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