View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11478_low_5 (Length: 267)

Name: NF11478_low_5
Description: NF11478
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11478_low_5
NF11478_low_5
[»] chr2 (1 HSPs)
chr2 (3-199)||(2688533-2688728)
[»] chr4 (4 HSPs)
chr4 (74-177)||(21392566-21392670)
chr4 (65-111)||(1298740-1298786)
chr4 (59-105)||(5249939-5249985)
chr4 (60-104)||(12595586-12595630)
[»] chr1 (5 HSPs)
chr1 (60-105)||(51436727-51436772)
chr1 (63-113)||(29877360-29877410)
chr1 (60-121)||(41062768-41062829)
chr1 (65-121)||(44906493-44906547)
chr1 (61-105)||(27533441-27533485)
[»] chr8 (3 HSPs)
chr8 (74-176)||(10692436-10692540)
chr8 (64-122)||(37942866-37942924)
chr8 (61-105)||(7598779-7598823)
[»] scaffold0010 (1 HSPs)
scaffold0010 (59-105)||(134258-134304)
[»] chr5 (2 HSPs)
chr5 (63-121)||(31683454-31683512)
chr5 (61-122)||(8686944-8687005)
[»] chr6 (1 HSPs)
chr6 (61-122)||(34048695-34048756)
[»] chr3 (1 HSPs)
chr3 (74-118)||(50743462-50743506)


Alignment Details
Target: chr2 (Bit Score: 157; Significance: 1e-83; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 3 - 199
Target Start/End: Original strand, 2688533 - 2688728
Alignment:
Q  3 tttatttatagtaatactctgctttttcatctttgaaaccattttgatgaataaacataggtattgacatgaaaaccaaaacaatcaatagagaaagtaa 102  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||  |||||||||||||    
T  2688533 tttatttat-gtaatactctgctttttcatctttgaaaccattttgatgaataaatataggtattgacataaaaaccaaaacaattgatagagaaagtaa 2688631  T
Q  103 aaatacaatataaatatgaatatagttgtcccaaaaattataacaaaacgacagttcaaatatcatttctcttttttatatttggaattttatctaa 199  Q
    ||||||||||| |||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||    
T  2688632 aaatacaatatgaatatgaataaagttgtcccaaaaattataacaaaatgacagttcaaatatcatttctcttttttatatttgggattttatctaa 2688728  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000004; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 74 - 177
Target Start/End: Complemental strand, 21392670 - 21392566
Alignment:
Q  74 aaaaccaaaacaatcaatagagaaagtaaaaatacaatataaatatgaat---atagttgtcccaaaaattataacaaaacgacagttcaaatatcattt 170  Q
    ||||||||||||||  | ||| |||||||||| | ||||||||||||||    | || |||| |||||||||| |||||| ||  |||||||||||||||    
T  21392670 aaaaccaaaacaat--agagataaagtaaaaacataatataaatatgaaagagaaagctgtcacaaaaattattacaaaatgattgttcaaatatcattt 21392573  T
Q  171 ctctttt 177  Q
    |||||||    
T  21392572 ctctttt 21392566  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 65 - 111
Target Start/End: Original strand, 1298740 - 1298786
Alignment:
Q  65 attgacatgaaaaccaaaacaatcaatagagaaagtaaaaatacaat 111  Q
    |||||||| |||||||||||||| || ||||||||||| ||||||||    
T  1298740 attgacataaaaaccaaaacaataaagagagaaagtaagaatacaat 1298786  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 59 - 105
Target Start/End: Complemental strand, 5249985 - 5249939
Alignment:
Q  59 ataggtattgacatgaaaaccaaaacaatcaatagagaaagtaaaaa 105  Q
    ||||||||||||| |||||||||||||||  | ||||||||||||||    
T  5249985 ataggtattgacacgaaaaccaaaacaatagagagagaaagtaaaaa 5249939  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 60 - 104
Target Start/End: Original strand, 12595586 - 12595630
Alignment:
Q  60 taggtattgacatgaaaaccaaaacaatcaatagagaaagtaaaa 104  Q
    |||||||||||| |||||||||||||||  | |||||||||||||    
T  12595586 taggtattgacacgaaaaccaaaacaatagagagagaaagtaaaa 12595630  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000004; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 60 - 105
Target Start/End: Original strand, 51436727 - 51436772
Alignment:
Q  60 taggtattgacatgaaaaccaaaacaatcaatagagaaagtaaaaa 105  Q
    |||||||||||||||||||||||||||| || ||| ||||||||||    
T  51436727 taggtattgacatgaaaaccaaaacaataaagagataaagtaaaaa 51436772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 63 - 113
Target Start/End: Complemental strand, 29877410 - 29877360
Alignment:
Q  63 gtattgacatgaaaaccaaaacaatcaatagagaaagtaaaaatacaatat 113  Q
    ||||||||| |||||||||||||||  | |||||||||||| |||||||||    
T  29877410 gtattgacacgaaaaccaaaacaatagagagagaaagtaaagatacaatat 29877360  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 60 - 121
Target Start/End: Complemental strand, 41062829 - 41062768
Alignment:
Q  60 taggtattgacatgaaaaccaaaacaatcaatagagaaagtaaaaatacaatataaatatga 121  Q
    |||||||| | || |||| ||||||||| || |||||||||||||||| ||||| |||||||    
T  41062829 taggtattaatataaaaatcaaaacaatgaaaagagaaagtaaaaatataatatgaatatga 41062768  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 65 - 121
Target Start/End: Original strand, 44906493 - 44906547
Alignment:
Q  65 attgacatgaaaaccaaaacaatcaatagagaaagtaaaaatacaatataaatatga 121  Q
    ||||||||||||||||||| |||  |||||||||||||||||| ||| ||| |||||    
T  44906493 attgacatgaaaaccaaaataat--atagagaaagtaaaaatataatctaagtatga 44906547  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 61 - 105
Target Start/End: Original strand, 27533441 - 27533485
Alignment:
Q  61 aggtattgacatgaaaaccaaaacaatcaatagagaaagtaaaaa 105  Q
    |||||||||||| |||| ||||||||| || ||||||||||||||    
T  27533441 aggtattgacataaaaatcaaaacaataaagagagaaagtaaaaa 27533485  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000006; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 74 - 176
Target Start/End: Complemental strand, 10692540 - 10692436
Alignment:
Q  74 aaaaccaaaacaatcaatagagaaagtaaaaatacaatataaatatga---atatagttgtcccaaaaattataacaaaacgacagttcaaatatcattt 170  Q
    ||||||||||||||  | |||||||||||||| | ||| | | |||||   ||| ||||||| |||||||||||| |||| ||  |||||||||||||||    
T  10692540 aaaaccaaaacaatagagagagaaagtaaaaagataatgtgagtatgagagataaagttgtcacaaaaattataa-aaaatgattgttcaaatatcattt 10692442  T
Q  171 ctcttt 176  Q
    ||||||    
T  10692441 ctcttt 10692436  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 64 - 122
Target Start/End: Original strand, 37942866 - 37942924
Alignment:
Q  64 tattgacatgaaaaccaaaacaatcaatagagaaagtaaaaatacaatataaatatgaa 122  Q
    ||||||||| ||||| ||||||||  | |||||||||||||||| ||| ||||||||||    
T  37942866 tattgacataaaaactaaaacaatagagagagaaagtaaaaatataatgtaaatatgaa 37942924  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 61 - 105
Target Start/End: Complemental strand, 7598823 - 7598779
Alignment:
Q  61 aggtattgacatgaaaaccaaaacaatcaatagagaaagtaaaaa 105  Q
    |||||||||||| ||||||||||||||  || |||||||||||||    
T  7598823 aggtattgacataaaaaccaaaacaatatattgagaaagtaaaaa 7598779  T

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Target: scaffold0010 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0010
Description:

Target: scaffold0010; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 59 - 105
Target Start/End: Original strand, 134258 - 134304
Alignment:
Q  59 ataggtattgacatgaaaaccaaaacaatcaatagagaaagtaaaaa 105  Q
    ||||||||||||| ||||||||||||||| || ||| ||||||||||    
T  134258 ataggtattgacacgaaaaccaaaacaataaagagataaagtaaaaa 134304  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 63 - 121
Target Start/End: Original strand, 31683454 - 31683512
Alignment:
Q  63 gtattgacatgaaaaccaaaacaatcaatagagaaagtaaaaatacaatataaatatga 121  Q
    |||||||||  |||||||||||||| || |||||||||||||| | ||||| |||||||    
T  31683454 gtattgacacaaaaaccaaaacaataaaaagagaaagtaaaaacataatatgaatatga 31683512  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 61 - 122
Target Start/End: Complemental strand, 8687005 - 8686944
Alignment:
Q  61 aggtattgacatgaaaaccaaaacaatcaatagagaaagtaaaaatacaatataaatatgaa 122  Q
    |||||||||||  |||||||||||||| || | | |||||||||| | ||||||||||||||    
T  8687005 aggtattgacacaaaaaccaaaacaataaaaaaataaagtaaaaagataatataaatatgaa 8686944  T

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Target: chr6 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 61 - 122
Target Start/End: Original strand, 34048695 - 34048756
Alignment:
Q  61 aggtattgacatgaaaaccaaaacaatcaatagagaaagtaaaaatacaatataaatatgaa 122  Q
    |||||||||||  |||||||||||||| || |||||||||||| ||| ||| ||| ||||||    
T  34048695 aggtattgacaataaaaccaaaacaataaaaagagaaagtaaatatataatgtaagtatgaa 34048756  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 74 - 118
Target Start/End: Complemental strand, 50743506 - 50743462
Alignment:
Q  74 aaaaccaaaacaatcaatagagaaagtaaaaatacaatataaata 118  Q
    |||||||||| ||| |||||| |||||||||||| ||||||||||    
T  50743506 aaaaccaaaataataaatagataaagtaaaaatataatataaata 50743462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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