View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11478_low_6 (Length: 261)
Name: NF11478_low_6
Description: NF11478
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11478_low_6 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 147; Significance: 1e-77; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 103 - 261
Target Start/End: Complemental strand, 13082858 - 13082700
Alignment:
| Q |
103 |
ttgtgcatcctaccttcccatgataagagtgcatcttcatatttccaagttctttgacggtggctaaaccctttgttccaccatttccttgacaggcatc |
202 |
Q |
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| T |
13082858 |
ttgtgcatcctaccttcccatgataagagtgcatcttcatatttccaagttctttgacggtggctaaaccctttgttccaccatttccttgacaggcatc |
13082759 |
T |
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| Q |
203 |
ttgactatgtatctttttagaatgttttgcagcttcttgaagtctcatccttcttcttc |
261 |
Q |
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| T |
13082758 |
ttgactatgtatctttttagaatgttttgcagcctcttaaagtcacatccttcttcttc |
13082700 |
T |
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Target: chr4; HSP #2
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 32 - 103
Target Start/End: Complemental strand, 13083046 - 13082975
Alignment:
| Q |
32 |
tgattacatcaagcctatatatttttaacatctctaataataacaaagtcttaagaatgtggtatgtcaaat |
103 |
Q |
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| T |
13083046 |
tgattacatcaagcctatatatttttaacatctctaataataacaaagtcttaagaatgtggtatgtcaaat |
13082975 |
T |
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