View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11478_low_8 (Length: 250)
Name: NF11478_low_8
Description: NF11478
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11478_low_8 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 228; Significance: 1e-126; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 8103057 - 8102818
Alignment:
| Q |
1 |
tccagatggtattcaacgtcccatacgatttcccttcactaagaagctacaaaataaccaatctggtgggttgagtttttcatcatctaataacgaaaaa |
100 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
8103057 |
tccagatggtattcaatgtcccatacgatttcccttcactaagaagctacaaaataaccaatctgatgggttgagtttttcatcatctaataacgaaaaa |
8102958 |
T |
|
| Q |
101 |
ctaaataacgaaaaactcaacccatcagttaggttatttcatttcacaaaggagaaaatctctcaattgaaattgaaagccaacttagaaacggatacga |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
8102957 |
ctaaataacgaaaaactcaacccatcagttaggttatttcatttcacaaaggagaaaatctctcaattgaaattgaaagccaacttagaaacgggtacga |
8102858 |
T |
|
| Q |
201 |
acaaaatatcttcccttcaagcactttttgcacacctttg |
240 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8102857 |
acaaaatatcttcccttcaagcactttttgcacacctttg |
8102818 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 105 - 240
Target Start/End: Original strand, 40146992 - 40147127
Alignment:
| Q |
105 |
ataacgaaaaactcaacccatcagttaggttatttcatttcacaaaggagaaaatctctcaattgaaattgaaagccaacttagaaacggatacgaacaa |
204 |
Q |
| |
|
|||||||||| |||| ||||||| |||||||| ||||||||||||||||||||| ||||| ||||||||||||||||| | || | | ||| ||||| |
|
|
| T |
40146992 |
ataacgaaaagttcaatccatcagagaggttattccatttcacaaaggagaaaatcgctcaactgaaattgaaagccaacatggagattggtaccaacaa |
40147091 |
T |
|
| Q |
205 |
aatatcttcccttcaagcactttttgcacacctttg |
240 |
Q |
| |
|
|||||| ||||| ||| |||||||| |||| ||||| |
|
|
| T |
40147092 |
aatatcatccctccaatcactttttacacatctttg |
40147127 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 46; Significance: 2e-17; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 102
Target Start/End: Complemental strand, 7606817 - 7606716
Alignment:
| Q |
1 |
tccagatggtattcaacgtcccatacgatttcccttcactaagaagctacaaaataaccaatctggtgggttgagtttttcatcatctaataacgaaaaa |
100 |
Q |
| |
|
|||| |||||||||||| ||||||||||||||| ||||||| | ||| ||||||||| || | || || ||||||||||||||| |||||| | |||||| |
|
|
| T |
7606817 |
tccaaatggtattcaacttcccatacgatttcctttcactacggagcaacaaaataatcactgtgatgagttgagtttttcatcgtctaatgaggaaaaa |
7606718 |
T |
|
| Q |
101 |
ct |
102 |
Q |
| |
|
|| |
|
|
| T |
7606717 |
ct |
7606716 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 130 - 178
Target Start/End: Complemental strand, 7637534 - 7637486
Alignment:
| Q |
130 |
taggttatttcatttcacaaaggagaaaatctctcaattgaaattgaaa |
178 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||| |||| |
|
|
| T |
7637534 |
taggttatttcatttcacaaaggagaaaatcctacaattgaaatcgaaa |
7637486 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 130 - 160
Target Start/End: Complemental strand, 7606703 - 7606673
Alignment:
| Q |
130 |
taggttatttcatttcacaaaggagaaaatc |
160 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
7606703 |
taggttatttcatttcacaaaggagaaaatc |
7606673 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 130 - 178
Target Start/End: Original strand, 8910814 - 8910862
Alignment:
| Q |
130 |
taggttatttcatttcacaaaggagaaaatctctcaattgaaattgaaa |
178 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||| |||| |
|
|
| T |
8910814 |
taggttatttcatttcacaaaggagaaaatcctacaattgaaatcgaaa |
8910862 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University