View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11478_low_9 (Length: 250)
Name: NF11478_low_9
Description: NF11478
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11478_low_9 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 240; Significance: 1e-133; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 37844916 - 37845155
Alignment:
| Q |
1 |
aataaattccttctcaagcttccaccataataactactttgataaattcaataacagggtgatcctacctatcttgtggtagagagtgacagaacacttg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37844916 |
aataaattccttctcaagcttccaccataataactactttgataaattcaataacagggtgatcctacctatcttgtggtagagagtgacagaacacttg |
37845015 |
T |
|
| Q |
101 |
caacatttgcaattaatgccgtatgcactcacctcgggtgtgtcgtgccatttaatcaagctgagaagaagttcatctgcccctgccatggatctcagta |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37845016 |
caacatttgcaattaatgccgtatgcactcacctcgggtgtgtcgtgccatttaatcaagctgagaagaagttcatctgcccctgccatggatctcagta |
37845115 |
T |
|
| Q |
201 |
caatgaccaaggaagagttgtgagaggacctgctcctttg |
240 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37845116 |
caatgaccaaggaagagttgtgagaggacctgctcctttg |
37845155 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University