View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11479_high_11 (Length: 219)
Name: NF11479_high_11
Description: NF11479
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11479_high_11 |
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Alignment Details
Target: chr1 (Bit Score: 186; Significance: 1e-101; HSPs: 10)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 1 - 202
Target Start/End: Original strand, 1857324 - 1857525
Alignment:
| Q |
1 |
tatgcattttctatcttgcttgaaaaacgataatgtgtttgaagttattcaagatggtatgtggaatgaagaaaacaaacaagagatcatggaggtggct |
100 |
Q |
| |
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||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||| |
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| T |
1857324 |
tatgcattttctatcttgcttgaaaaaggataatgtatttgaagttattcaagatggtttgtggaatgaagaaaacaaacaagagatcaaggaggtggct |
1857423 |
T |
|
| Q |
101 |
gttcttgcggcgaagtgtttgagacttagaggggaagaaagaccaagcatgaaggaagtggctatggaattggagggaatgaggttaatgaataagcact |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1857424 |
gttcttgcggcgaagtgtttgagacttagaggggaagaaagaccaagcatgaaggaagtggctatggaattggagggaatgaggttaatgaataagcact |
1857523 |
T |
|
| Q |
201 |
ct |
202 |
Q |
| |
|
|| |
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|
| T |
1857524 |
ct |
1857525 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 177; E-Value: 1e-95
Query Start/End: Original strand, 6 - 202
Target Start/End: Original strand, 1843318 - 1843514
Alignment:
| Q |
6 |
attttctatcttgcttgaaaaacgataatgtgtttgaagttattcaagatggtatgtggaatgaagaaaacaaacaagagatcatggaggtggctgttct |
105 |
Q |
| |
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|||| |||||||| |||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
1843318 |
atttactatcttgattgaaaaaagataatgtgtttgaagttattcaagatggtttgtggaatgaagaaaacaaacaagagatcaaggaggtggctgttct |
1843417 |
T |
|
| Q |
106 |
tgcggcgaagtgtttgagacttagaggggaagaaagaccaagcatgaaggaagtggctatggaattggagggaatgaggttaatgaataagcactct |
202 |
Q |
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| T |
1843418 |
tgcggcgaagtgtttgagacttagaggggaagaaagaccaagcatgaaggaagtggctatggaattggagggaatgaggttaatgaataagcactct |
1843514 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 177; E-Value: 1e-95
Query Start/End: Original strand, 2 - 202
Target Start/End: Original strand, 1868923 - 1869123
Alignment:
| Q |
2 |
atgcattttctatcttgcttgaaaaacgataatgtgtttgaagttattcaagatggtatgtggaatgaagaaaacaaacaagagatcatggaggtggctg |
101 |
Q |
| |
|
|||||||| |||||||| |||||||| |||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||| |
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| T |
1868923 |
atgcatttactatcttgattgaaaaaagataatgtatttgaagttattcaagatggtttgtggaatgaagaaaacaaacaagagatcaaggaggtggctg |
1869022 |
T |
|
| Q |
102 |
ttcttgcggcgaagtgtttgagacttagaggggaagaaagaccaagcatgaaggaagtggctatggaattggagggaatgaggttaatgaataagcactc |
201 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1869023 |
ttcttgcggcgaagtgtttgagacttagaggggaagaaagaccaagcatgaaggaagtggctatggaattggagggaatgaggttaatgaataagcactc |
1869122 |
T |
|
| Q |
202 |
t |
202 |
Q |
| |
|
| |
|
|
| T |
1869123 |
t |
1869123 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 12 - 202
Target Start/End: Complemental strand, 1815709 - 1815519
Alignment:
| Q |
12 |
tatcttgcttgaaaaacgataatgtgtttgaagttattcaagatggtatgtggaatgaagaaaacaaacaagagatcatggaggtggctgttcttgcggc |
111 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
1815709 |
tatcttgcttgaaaaaggataatgtgtttgaagttattcaagatggtttgtggaatgaagaaaacaaacaagtgatcatggaggtggctgttcttgcggc |
1815610 |
T |
|
| Q |
112 |
gaagtgtttgagacttagaggggaagaaagaccaagcatgaaggaagtggctatggaattggagggaatgaggttaatgaataagcactct |
202 |
Q |
| |
|
||| ||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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|
| T |
1815609 |
gaactgtttgagacttataggggaggaaagaccaagcatgaaggaagtggctatggaattggagggaatgaggttaatggataagcactct |
1815519 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 38 - 190
Target Start/End: Complemental strand, 9161505 - 9161353
Alignment:
| Q |
38 |
tttgaagttattcaagatggtatgtggaatgaagaaaacaaacaagagatcatggaggtggctgttcttgcggcgaagtgtttgagacttagaggggaag |
137 |
Q |
| |
|
||||||| |||||||| |||||| | ||||| |||||||| | ||||| | |||||| ||| ||||||| || | |||||||||||| |||||||| | |
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|
| T |
9161505 |
tttgaagctattcaagttggtattttaaatgatgaaaacaaggaggagattaaggaggttgctattcttgcagcaaggtgtttgagactaagaggggatg |
9161406 |
T |
|
| Q |
138 |
aaagaccaagcatgaaggaagtggctatggaattggagggaatgaggttaatg |
190 |
Q |
| |
|
|||| || ||||||||||||||||| ||||| ||||| || || ||||||||| |
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| T |
9161405 |
aaaggcctagcatgaaggaagtggcaatggagttggatggtataaggttaatg |
9161353 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 38 - 188
Target Start/End: Original strand, 9118947 - 9119097
Alignment:
| Q |
38 |
tttgaagttattcaagatggtatgtggaatgaagaaaacaaacaagagatcatggaggtggctgttcttgcggcgaagtgtttgagacttagaggggaag |
137 |
Q |
| |
|
||||||| |||||||| ||| || | |||||| || ||||| ||||||| | |||||| ||| ||||||| || | ||||||||||||| |||| || | |
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|
| T |
9118947 |
tttgaagctattcaagttggaattttgaatgatgataacaaggaagagattaaggaggttgctattcttgcagcaaggtgtttgagacttcgaggagagg |
9119046 |
T |
|
| Q |
138 |
aaagaccaagcatgaaggaagtggctatggaattggagggaatgaggttaa |
188 |
Q |
| |
|
||||||| || ||||||||| | |||||||| ||||| || || ||||||| |
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|
| T |
9119047 |
aaagacctagtatgaaggaaatagctatggagttggatggtataaggttaa |
9119097 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 66 - 190
Target Start/End: Complemental strand, 9199870 - 9199746
Alignment:
| Q |
66 |
atgaagaaaacaaacaagagatcatggaggtggctgttcttgcggcgaagtgtttgagacttagaggggaagaaagaccaagcatgaaggaagtggctat |
165 |
Q |
| |
|
|||| |||||||| ||||||| | |||||| ||| ||||||| || | |||||| ||||||||||| || |||||||| || |||| |||||| ||||| |
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|
| T |
9199870 |
atgatgaaaacaagaaagagattaaggaggttgctattcttgctgcaaggtgtttaagacttagaggtgatgaaagacctagtatgagggaagtagctat |
9199771 |
T |
|
| Q |
166 |
ggaattggagggaatgaggttaatg |
190 |
Q |
| |
|
||| ||||| || || ||||||||| |
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|
| T |
9199770 |
ggagttggatggtataaggttaatg |
9199746 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 33 - 168
Target Start/End: Complemental strand, 9229304 - 9229169
Alignment:
| Q |
33 |
atgtgtttgaagttattcaagatggtatgtggaatgaagaaaacaaacaagagatcatggaggtggctgttcttgcggcgaagtgtttgagacttagagg |
132 |
Q |
| |
|
|||||| ||||||| |||||| |||||| | |||||| || ||||| | ||||| | ||| || ||| ||||||| || | ||| |||||||||| ||| |
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|
| T |
9229304 |
atgtgtctgaagttcttcaagttggtattttgaatgatgagaacaaggaggagattaaggaagttgctattcttgctgcaaggtgcttgagacttaaagg |
9229205 |
T |
|
| Q |
133 |
ggaagaaagaccaagcatgaaggaagtggctatgga |
168 |
Q |
| |
|
|| |||||||| |||||||| |||||||||||||| |
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|
| T |
9229204 |
cgaggaaagacctagcatgaaagaagtggctatgga |
9229169 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 81 - 190
Target Start/End: Complemental strand, 9170288 - 9170179
Alignment:
| Q |
81 |
aagagatcatggaggtggctgttcttgcggcgaagtgtttgagacttagaggggaagaaagaccaagcatgaaggaagtggctatggaattggagggaat |
180 |
Q |
| |
|
||||||| | |||||| ||| ||||||| | | |||||| |||||||||||||| |||||||| | |||||||||||||| ||||| ||||| || || |
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|
| T |
9170288 |
aagagattaaggaggttgctattcttgcttcaaggtgtttaagacttagaggggatgaaagaccttgtatgaaggaagtggcaatggagttggatggcat |
9170189 |
T |
|
| Q |
181 |
gaggttaatg |
190 |
Q |
| |
|
||||||||| |
|
|
| T |
9170188 |
aaggttaatg |
9170179 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 65 - 190
Target Start/End: Complemental strand, 9218387 - 9218262
Alignment:
| Q |
65 |
aatgaagaaaacaaacaagagatcatggaggtggctgttcttgcggcgaagtgtttgagacttagaggggaagaaagaccaagcatgaaggaagtggcta |
164 |
Q |
| |
|
||||| |||||||| ||||||| | |||||| || ||||||| || | |||||| ||||||||||| || |||||||| || |||| |||||| |||| |
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|
| T |
9218387 |
aatgatgaaaacaagaaagagattaaggaggtttctattcttgctgcaaggtgtttaagacttagaggtgatgaaagacctagtatgagggaagtagcta |
9218288 |
T |
|
| Q |
165 |
tggaattggagggaatgaggttaatg |
190 |
Q |
| |
|
|||| ||||| || || ||||||||| |
|
|
| T |
9218287 |
tggagttggatggcataaggttaatg |
9218262 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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