View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11479_high_9 (Length: 238)
Name: NF11479_high_9
Description: NF11479
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11479_high_9 |
 | |
|
| [»] scaffold0294 (1 HSPs) |
| | |
|
Alignment Details
Target: chr4 (Bit Score: 198; Significance: 1e-108; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 19 - 224
Target Start/End: Complemental strand, 11696225 - 11696020
Alignment:
| Q |
19 |
aatatatagatgagagaagcaagtatgattgtgcggtaacgtccaagaaaagaatcagcaatgaaagcaccaaagagaggaagtagagaagcagttccag |
118 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11696225 |
aatatatagatgagagaagcaagcatgattgtgcggtagcgtccaagaaaagaatcagcaatgaaagcaccaaagagaggaagtagagaagcagttccag |
11696126 |
T |
|
| Q |
119 |
cccaaatattcacattttcagcagcttttgcagtgctttgtttgagtggtcctgttagatatgatatcaaattcccttgaattccataatatgatgccct |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11696125 |
cccaaatattcacattttcagcagcttttgcagtgctttgtttgagtggtcctgttagatatgatatcaaattcccttgaattccataatatgatgccct |
11696026 |
T |
|
| Q |
219 |
ctctgc |
224 |
Q |
| |
|
|||||| |
|
|
| T |
11696025 |
ctctgc |
11696020 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 22 - 224
Target Start/End: Complemental strand, 11798063 - 11797861
Alignment:
| Q |
22 |
atatagatgagagaagcaagtatgattgtgcggtaacgtccaagaaaagaatcagcaatgaaagcaccaaagagaggaagtagagaagcagttccagccc |
121 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
11798063 |
atatagatgagagaagcaagtatgattgtgcggtagcgtccaagaaaagaatcagcaatgaaagcaccaaagagaggaagtagagaagcagttccaaccc |
11797964 |
T |
|
| Q |
122 |
aaatattcacattttcagcagcttttgcagtgctttgtttgagtggtcctgttagatatgatatcaaattcccttgaattccataatatgatgccctctc |
221 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
11797963 |
aaacattcacattttcagcagcttttgcagtgctttgtttgagtggtcctgttagatatgatatcaaattcccttgaattccataatatgataccctctc |
11797864 |
T |
|
| Q |
222 |
tgc |
224 |
Q |
| |
|
||| |
|
|
| T |
11797863 |
tgc |
11797861 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 22 - 224
Target Start/End: Complemental strand, 11676126 - 11675924
Alignment:
| Q |
22 |
atatagatgagagaagcaagtatgattgtgcggtaacgtccaagaaaagaatcagcaatgaaagcaccaaagagaggaagtagagaagcagttccagccc |
121 |
Q |
| |
|
||||| ||||||||||| |||||||||||||| || |||||||||||||||||||||| |||||||||||||||||||| ||||||||| |||||||| |
|
|
| T |
11676126 |
atataaatgagagaagcgagtatgattgtgcgatagcgtccaagaaaagaatcagcaacaaaagcaccaaagagaggaaggagagaagcaactccagccc |
11676027 |
T |
|
| Q |
122 |
aaatattcacattttcagcagcttttgcagtgctttgtttgagtggtcctgttagatatgatatcaaattcccttgaattccataatatgatgccctctc |
221 |
Q |
| |
|
||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||| ||||||| |
|
|
| T |
11676026 |
aaatattcacattctcagcagcagttgcagtgctttgtttgagtggtcctgttagatatgatatcaagttcccttgaatcccataatatgataccctctc |
11675927 |
T |
|
| Q |
222 |
tgc |
224 |
Q |
| |
|
||| |
|
|
| T |
11675926 |
tgc |
11675924 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 22 - 224
Target Start/End: Complemental strand, 11684405 - 11684203
Alignment:
| Q |
22 |
atatagatgagagaagcaagtatgattgtgcggtaacgtccaagaaaagaatcagcaatgaaagcaccaaagagaggaagtagagaagcagttccagccc |
121 |
Q |
| |
|
||||| ||||||||||| |||||||||||||| || |||||||||||||||||||||| |||||||||||||||||||| ||||||||| |||||||| |
|
|
| T |
11684405 |
atataaatgagagaagcgagtatgattgtgcgatagcgtccaagaaaagaatcagcaacaaaagcaccaaagagaggaaggagagaagcaactccagccc |
11684306 |
T |
|
| Q |
122 |
aaatattcacattttcagcagcttttgcagtgctttgtttgagtggtcctgttagatatgatatcaaattcccttgaattccataatatgatgccctctc |
221 |
Q |
| |
|
||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||| ||||||| |
|
|
| T |
11684305 |
aaatattcacattctcagcagcagttgcagtgctttgtttgagtggtcctgttagatatgatatcaagttcccttgaatcccataatatgataccctctc |
11684206 |
T |
|
| Q |
222 |
tgc |
224 |
Q |
| |
|
||| |
|
|
| T |
11684205 |
tgc |
11684203 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 22 - 224
Target Start/End: Complemental strand, 11702019 - 11701817
Alignment:
| Q |
22 |
atatagatgagagaagcaagtatgattgtgcggtaacgtccaagaaaagaatcagcaatgaaagcaccaaagagaggaagtagagaagcagttccagccc |
121 |
Q |
| |
|
|||||||| ||||||||||||||||||||||| || |||||||||||||||||||||| |||||||| |||||||||||||||||||| |||||||||| |
|
|
| T |
11702019 |
atatagataagagaagcaagtatgattgtgcgatagcgtccaagaaaagaatcagcaacaaaagcacctaagagaggaagtagagaagctgttccagccc |
11701920 |
T |
|
| Q |
122 |
aaatattcacattttcagcagcttttgcagtgctttgtttgagtggtcctgttagatatgatatcaaattcccttgaattccataatatgatgccctctc |
221 |
Q |
| |
|
||| ||| ||||| | ||||||| |||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
11701919 |
aaacatttacattcttagcagctgttgcagtgctctgtttgagtggccctgttagatatgatatcaaattcccttgaattccataatatgataccctctc |
11701820 |
T |
|
| Q |
222 |
tgc |
224 |
Q |
| |
|
||| |
|
|
| T |
11701819 |
tgc |
11701817 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 19 - 188
Target Start/End: Complemental strand, 11779204 - 11779035
Alignment:
| Q |
19 |
aatatatagatgagagaagcaagtatgattgtgcggtaacgtccaagaaaagaatcagcaatgaaagcaccaaagagaggaagtagagaagcagttccag |
118 |
Q |
| |
|
|||| |||||| ||||||||||||||||||||| | || |||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||| |
|
|
| T |
11779204 |
aatacatagataagagaagcaagtatgattgtgtgatagcgtccaagaaaagaatcagcaatgaatgcaccaaagagaggaaggagagaagcagttccag |
11779105 |
T |
|
| Q |
119 |
cccaaatattcacattttcagcagcttttgcagtgctttgtttgagtggtcctgttagatatgatatcaa |
188 |
Q |
| |
|
|||||| ||||||||| | |||||| |||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
11779104 |
cccaaacattcacattcttagcagcagttgcagtgctttgtttgagtggccctgttagatatgatatcaa |
11779035 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0294 (Bit Score: 135; Significance: 2e-70; HSPs: 1)
Name: scaffold0294
Description:
Target: scaffold0294; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 19 - 225
Target Start/End: Complemental strand, 16667 - 16461
Alignment:
| Q |
19 |
aatatatagatgagagaagcaagtatgattgtgcggtaacgtccaagaaaagaatcagcaatgaaagcaccaaagagaggaagtagagaagcagttccag |
118 |
Q |
| |
|
||||||||||| ||||||||||||||||||||| | || |||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
16667 |
aatatatagataagagaagcaagtatgattgtgtgatagcgtccaagaaaagaatcagcaacgaaagcacctaagagaggaagtagagaagcagttccag |
16568 |
T |
|
| Q |
119 |
cccaaatattcacattttcagcagcttttgcagtgctttgtttgagtggtcctgttagatatgatatcaaattcccttgaattccataatatgatgccct |
218 |
Q |
| |
|
|||||||||||||||| | ||||||| ||||||||||||||||||||||||||||||||||||||||||| || || | ||| ||| ||||||| ||| |
|
|
| T |
16567 |
cccaaatattcacattcttagcagctgttgcagtgctttgtttgagtggtcctgttagatatgatatcaagtttcccttaatcccaatatatgatatcct |
16468 |
T |
|
| Q |
219 |
ctctgct |
225 |
Q |
| |
|
||||||| |
|
|
| T |
16467 |
ctctgct |
16461 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 43 - 91
Target Start/End: Original strand, 6627 - 6675
Alignment:
| Q |
43 |
atgattgtgcggtaacgtccaagaaaagaatcagcaatgaaagcaccaa |
91 |
Q |
| |
|
||||| ||||||||||| ||||||||||||||||||| |||||||||| |
|
|
| T |
6627 |
atgatggtgcggtaacggccaagaaaagaatcagcaagaaaagcaccaa |
6675 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University