View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11479_low_1 (Length: 608)
Name: NF11479_low_1
Description: NF11479
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11479_low_1 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 295; Significance: 1e-165; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 295; E-Value: 1e-165
Query Start/End: Original strand, 267 - 592
Target Start/End: Complemental strand, 8044612 - 8044283
Alignment:
| Q |
267 |
cctacctctcttctagaacatatcaattctcactattagcaagcgatcaatatgaagattttgtagtacaaaagaaacgtttgaagttatagcagtctag |
366 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8044612 |
cctacctctcttctagaacatatcaattctcactattagcaagcgatcaatatga-gattttgtagtacaaaagaaacgtttgaagttatagcagtctag |
8044514 |
T |
|
| Q |
367 |
cagactatgaaggttgcttgataattgatatgccaccttaatcccagtgccataggcatttttctaagaaattcgagaaagaaatatacaaaattaaaat |
466 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8044513 |
cagactatgaaggttgcttgataattgatatgccaccttaatcccagtgccatatgcatttttctaagaaattcgagaaagaaatatacaaaattaaaat |
8044414 |
T |
|
| Q |
467 |
acatcgcttgtagaa-----aaagcaagctaatcgatctgaaaatttgctccagaagtatactttcatcgtatatttacaagtgccaactatgacgcaac |
561 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8044413 |
acatcgcttgtagaaaaattaaagcaagctaatcgatctgaaaatttgctccagaagtatactttcatcgtatatttacaagtgccaactatgacgcaac |
8044314 |
T |
|
| Q |
562 |
aaaggaaacttgaaaaaataaatcatacatt |
592 |
Q |
| |
|
||||||||||| ||||||||||||||||||| |
|
|
| T |
8044313 |
aaaggaaacttaaaaaaataaatcatacatt |
8044283 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 16 - 253
Target Start/End: Complemental strand, 8044948 - 8044711
Alignment:
| Q |
16 |
atgaatgcgtcagggagtataattttgggcgtactgtaaaaaactttccaaggatagatggaccaaatttttgcgcaaatcgggaggatgtgattcaagt |
115 |
Q |
| |
|
|||||||| ||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8044948 |
atgaatgcctcagggagtataattttggttgtacagtaaaaaactttccaaggatagatggaccaaatttttgcgcaaatcgggaggatgtgattcaagt |
8044849 |
T |
|
| Q |
116 |
agagtcagtaggatatggactattcgattaagattagacggtttaaatctgactaattgcatgcagtcgtttgcactcaacctaaatccgacgatattca |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
8044848 |
agagtcagtaggatatggactattcgattaagattagacggtttaaatttgactaattgcatgcagtcgtttgcactcaacctaaatccgacgatatgca |
8044749 |
T |
|
| Q |
216 |
atgcttctttgttatacttcttcatccctaacaacaat |
253 |
Q |
| |
|
|||||||||||||||||||||||||||| ||| ||||| |
|
|
| T |
8044748 |
atgcttctttgttatacttcttcatccccaactacaat |
8044711 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 372 - 466
Target Start/End: Original strand, 7969100 - 7969200
Alignment:
| Q |
372 |
tatgaaggttgcttgataattgatatg------ccaccttaatcccagtgccataggcatttttctaagaaattcgagaaagaaatatacaaaattaaaa |
465 |
Q |
| |
|
||||||||||||||||||||||||||| |||||| ||||||||||||| | |||||||||||||||||| |||||||| |||||||||||||||| |
|
|
| T |
7969100 |
tatgaaggttgcttgataattgatatgtttatgccacctaaatcccagtgccacaagcatttttctaagaaattggagaaagagatatacaaaattaaaa |
7969199 |
T |
|
| Q |
466 |
t |
466 |
Q |
| |
|
| |
|
|
| T |
7969200 |
t |
7969200 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University