View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11479_low_11 (Length: 241)
Name: NF11479_low_11
Description: NF11479
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11479_low_11 |
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Alignment Details
Target: chr6 (Bit Score: 178; Significance: 4e-96; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 1 - 190
Target Start/End: Complemental strand, 23332784 - 23332595
Alignment:
| Q |
1 |
tataaggtagatcgtggtgcgtgggtcaccctgacttatgtacagccgaatcttctagatatgactatcgcagagagatcaggagtcgaaatcaactatc |
100 |
Q |
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| T |
23332784 |
tataaggtagatcgtggtgcgtgggtcaccctgacgtatgtacagccgaatcttctagatatgactatcgcagagagatcaggagtcgaaatcaactatc |
23332685 |
T |
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| Q |
101 |
ctaacaaatttcttcctcccatgtcgaaaatgattgtccaacgtgagggtggatcggtcatgcgcttctatcgctcattcgtccacatat |
190 |
Q |
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| T |
23332684 |
ctaacaaatttcttcctcccatgtcgaaaatgattgtcccacgtgagggtggatcggtcatgcgcttctatcgctcattcgtccatatat |
23332595 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 185 - 227
Target Start/End: Complemental strand, 23322373 - 23322331
Alignment:
| Q |
185 |
acatatgcgtttggattttacaacgattgtgtttggtgatgtc |
227 |
Q |
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| T |
23322373 |
acatatgcgtttggagtttacaacgtttgtgtttggtgatgtc |
23322331 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 185 - 227
Target Start/End: Complemental strand, 23332540 - 23332498
Alignment:
| Q |
185 |
acatatgcgtttggattttacaacgattgtgtttggtgatgtc |
227 |
Q |
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| T |
23332540 |
acatatgcgtttggagtttacaacgtttgtgtttggtgatgtc |
23332498 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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