View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11479_low_13 (Length: 237)

Name: NF11479_low_13
Description: NF11479
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11479_low_13
NF11479_low_13
[»] chr8 (2 HSPs)
chr8 (97-236)||(43228208-43228347)
chr8 (155-236)||(14839242-14839323)
[»] chr2 (4 HSPs)
chr2 (99-236)||(24455972-24456110)
chr2 (97-203)||(1614980-1615086)
chr2 (168-221)||(38251586-38251639)
chr2 (168-221)||(43157903-43157956)
[»] chr3 (2 HSPs)
chr3 (147-236)||(49234306-49234397)
chr3 (147-221)||(49233735-49233809)
[»] chr7 (1 HSPs)
chr7 (155-236)||(27962367-27962448)
[»] chr1 (3 HSPs)
chr1 (147-236)||(50862651-50862741)
chr1 (168-221)||(11475327-11475380)
chr1 (168-221)||(11503367-11503420)


Alignment Details
Target: chr8 (Bit Score: 112; Significance: 9e-57; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 97 - 236
Target Start/End: Complemental strand, 43228347 - 43228208
Alignment:
Q  97 gcaacaggagaccaatacaaacagccagttaaaaagacaatannnnnnnngtaaattgagccaaaacacacgaagaccaaggcaaagagaagaaagtaaa 196  Q
    ||||||||||||||||||||||||||||||||||||||| ||        ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43228347 gcaacaggagaccaatacaaacagccagttaaaaagacagtattttttttgtaaattgagccaaaacacacgaagaccaaggcaaagagaagaaagtaaa 43228248  T
Q  197 accgatatgttgcagctggaacacagagacaaatcagaac 236  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  43228247 accgatatgttgcagctggaacacagagacaaatcagaac 43228208  T

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Target: chr8; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 155 - 236
Target Start/End: Complemental strand, 14839323 - 14839242
Alignment:
Q  155 agccaaaacacacgaagaccaaggcaaagagaagaaagtaaaaccgatatgttgcagctggaacacagagacaaatcagaac 236  Q
    |||||||||||  ||||||  ||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  14839323 agccaaaacacttgaagacagaggaaaagagaagaaaataaaaccgatatgttgcagctggaacacagagacaaatcagaac 14839242  T

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Target: chr2 (Bit Score: 79; Significance: 5e-37; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 99 - 236
Target Start/End: Complemental strand, 24456110 - 24455972
Alignment:
Q  99 aacaggagaccaatacaaacagccagttaaaaagacaatannnnnnnngtaaattgagccaaaacacac-gaagaccaaggcaaagagaagaaagtaaaa 197  Q
    ||||||||| ||||||||||||||||||||||||||||||        ||||||||||||||||||||| ||| || ||||||||||||||||| |||||    
T  24456110 aacaggagaacaatacaaacagccagttaaaaagacaataatttttttgtaaattgagccaaaacacacagaaaacaaaggcaaagagaagaaaataaaa 24456011  T
Q  198 ccgatatgttgcagctggaacacagagacaaatcagaac 236  Q
    |||||||| |||||||||| |||||||| ||||||||||    
T  24456010 ccgatatggtgcagctggaccacagagaaaaatcagaac 24455972  T

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Target: chr2; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 97 - 203
Target Start/End: Original strand, 1614980 - 1615086
Alignment:
Q  97 gcaacaggagaccaatacaaacagccagttaaaaagacaatannnnnnnngtaaattgagccaaaacacacgaagaccaaggcaaagagaagaaagtaaa 196  Q
    ||||||||||| |||||||||||||| |||||||||||||||        |||||||||| |||||| || |||||| ||||||||||||||||| ||||    
T  1614980 gcaacaggagaacaatacaaacagccggttaaaaagacaatattttttttgtaaattgagacaaaacgcatgaagacaaaggcaaagagaagaaaataaa 1615079  T
Q  197 accgata 203  Q
    |||||||    
T  1615080 accgata 1615086  T

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Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 168 - 221
Target Start/End: Original strand, 38251586 - 38251639
Alignment:
Q  168 gaagaccaaggcaaagagaagaaagtaaaaccgatatgttgcagctggaacaca 221  Q
    ||||||||| ||||||||||||||  |||||| |||||||||||||||||||||    
T  38251586 gaagaccaaagcaaagagaagaaaacaaaaccaatatgttgcagctggaacaca 38251639  T

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Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 168 - 221
Target Start/End: Complemental strand, 43157956 - 43157903
Alignment:
Q  168 gaagaccaaggcaaagagaagaaagtaaaaccgatatgttgcagctggaacaca 221  Q
    ||||||||| ||||||||||||||  |||||| |||||||||||||||||||||    
T  43157956 gaagaccaaagcaaagagaagaaaacaaaaccaatatgttgcagctggaacaca 43157903  T

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Target: chr3 (Bit Score: 65; Significance: 1e-28; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 147 - 236
Target Start/End: Original strand, 49234306 - 49234397
Alignment:
Q  147 gtaaattgagccaaaacacacgaagaccaaggcaaagagaagaaagtaaaaccgatatgttgcagctggaacac--agagacaaatcagaac 236  Q
    |||||||||||||||||||| |||||||||||||||||||||||| ||||||| ||||||||||||||||||||  | ||||||||||||||    
T  49234306 gtaaattgagccaaaacacatgaagaccaaggcaaagagaagaaattaaaaccaatatgttgcagctggaacacaaatagacaaatcagaac 49234397  T

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Target: chr3; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 147 - 221
Target Start/End: Original strand, 49233735 - 49233809
Alignment:
Q  147 gtaaattgagccaaaacacacgaagaccaaggcaaagagaagaaagtaaaaccgatatgttgcagctggaacaca 221  Q
    ||||||| |||||||||||| |||||||||||||||||||||||| ||||||| |||||||||||||||||||||    
T  49233735 gtaaattaagccaaaacacatgaagaccaaggcaaagagaagaaattaaaaccaatatgttgcagctggaacaca 49233809  T

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Target: chr7 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 155 - 236
Target Start/End: Original strand, 27962367 - 27962448
Alignment:
Q  155 agccaaaacacacgaagaccaaggcaaagagaagaaagtaaaaccgatatgttgcagctggaacacagagacaaatcagaac 236  Q
    |||||||||||  ||||||  ||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  27962367 agccaaaacacttgaagacagaggaaaagagaagaaaataaaaccgatatgttgcagctggaacacagagacaaatcagaac 27962448  T

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Target: chr1 (Bit Score: 49; Significance: 4e-19; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 147 - 236
Target Start/End: Complemental strand, 50862741 - 50862651
Alignment:
Q  147 gtaaattgagccaaaacacacgaagaccaaggcaaagagaagaaagtaaaaccgatatgttgcagctggaacac--agagacaaatcagaac 236  Q
    ||||||||| |||||||||| |||||||||||||||||||||||| ||||||  ||||||||||| ||||||||  | ||||||||||||||    
T  50862741 gtaaattga-ccaaaacacatgaagaccaaggcaaagagaagaaattaaaactaatatgttgcagttggaacacaaatagacaaatcagaac 50862651  T

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Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 168 - 221
Target Start/End: Complemental strand, 11475380 - 11475327
Alignment:
Q  168 gaagaccaaggcaaagagaagaaagtaaaaccgatatgttgcagctggaacaca 221  Q
    ||||||||| ||||||||||||||  |||||| |||||||||||||||||||||    
T  11475380 gaagaccaaagcaaagagaagaaaacaaaaccaatatgttgcagctggaacaca 11475327  T

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Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 168 - 221
Target Start/End: Complemental strand, 11503420 - 11503367
Alignment:
Q  168 gaagaccaaggcaaagagaagaaagtaaaaccgatatgttgcagctggaacaca 221  Q
    ||||||||| ||||||||||||||  |||||| |||||||||||||||||||||    
T  11503420 gaagaccaaagcaaagagaagaaaacaaaaccaatatgttgcagctggaacaca 11503367  T

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