View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11479_low_15 (Length: 202)
Name: NF11479_low_15
Description: NF11479
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11479_low_15 |
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Alignment Details
Target: chr8 (Bit Score: 128; Significance: 2e-66; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 128; E-Value: 2e-66
Query Start/End: Original strand, 17 - 152
Target Start/End: Complemental strand, 43228226 - 43228091
Alignment:
| Q |
17 |
cacagagacaaatcagaacccagggaggaaaaaacgccaccaggtagaagctgcagtgcaaaaacactgctgctgcactacattagtccacatgccgaaa |
116 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43228226 |
cacagagacaaatcagaacgcagggaggaaaaaacgccaccaggtagaagctgcagtgcaaaaacactgctgctgcactacattagtccacatgccgaaa |
43228127 |
T |
|
| Q |
117 |
gccaactctaaattatgcagaaaatcaccctgatct |
152 |
Q |
| |
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|||||||||||||||||||||||||||||| ||||| |
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| T |
43228126 |
gccaactctaaattatgcagaaaatcaccccgatct |
43228091 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 17 - 133
Target Start/End: Complemental strand, 14839260 - 14839144
Alignment:
| Q |
17 |
cacagagacaaatcagaacccagggaggaaaaaacgccaccaggtagaagctgcagtgcaaaaacactgctgctgcactacattagtccacatgccgaaa |
116 |
Q |
| |
|
||||||||||||||||||| |||||||||||||| || | | |||| || |||||| | ||||||| || |||||| |||||||||||| |||| |||| |
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| T |
14839260 |
cacagagacaaatcagaacgtagggaggaaaaaactccgctacgtagcaggtgcagtaccaaaacaccgcggctgcattacattagtccatatgctgaaa |
14839161 |
T |
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| Q |
117 |
gccaactctaaattatg |
133 |
Q |
| |
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||| ||||||| |||| |
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| T |
14839160 |
accagctctaaactatg |
14839144 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 76; Significance: 2e-35; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 76; E-Value: 2e-35
Query Start/End: Original strand, 22 - 145
Target Start/End: Original strand, 49233813 - 49233936
Alignment:
| Q |
22 |
agacaaatcagaacccagggaggaaaaaacgccaccaggtagaagctgcagtgcaaaaacactgctgctgcactacattagtccacatgccgaaagccaa |
121 |
Q |
| |
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|||||||||| ||| ||||||||||| || ||||| | |||| ||||| ||| | |||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
49233813 |
agacaaatcaaaacacagggaggaaagaatgccactatgtagcagctgtagtaccaaaacactgctgctgcactacattagtccacatgccgaaaaccag |
49233912 |
T |
|
| Q |
122 |
ctctaaattatgcagaaaatcacc |
145 |
Q |
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|||||||||||||||||||||||| |
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| T |
49233913 |
ctctaaattatgcagaaaatcacc |
49233936 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 22 - 145
Target Start/End: Original strand, 49234384 - 49234508
Alignment:
| Q |
22 |
agacaaatcagaacccagggaggaaaaaacgccaccaggtagaagctgcagtgcaaaaacactgctgctgcactacattagtccacatgccgaaagccaa |
121 |
Q |
| |
|
|||||||||||||| |||||||||||||| ||||| | |||| ||||||||| | ||||||||||||||||| |||||||| |||||||| |||| ||| |
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| T |
49234384 |
agacaaatcagaacacagggaggaaaaaatgccactatgtagcagctgcagtaccaaaacactgctgctgcattacattagcccacatgcagaaaaccag |
49234483 |
T |
|
| Q |
122 |
ctctaaattatgc-agaaaatcacc |
145 |
Q |
| |
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||||||||||||| ||||||||||| |
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|
| T |
49234484 |
ctctaaattatgcaagaaaatcacc |
49234508 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 69; Significance: 4e-31; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 17 - 145
Target Start/End: Complemental strand, 24455990 - 24455862
Alignment:
| Q |
17 |
cacagagacaaatcagaacccagggaggaaaaaacgccaccaggtagaagctgcagtgcaaaaacactgctgctgcactacattagtccacatgccgaaa |
116 |
Q |
| |
|
|||||||| |||||||||| ||||||||||||| |||| | |||| ||||||| | | |||||||||||| |||| |||||||||||||||||||||| |
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|
| T |
24455990 |
cacagagaaaaatcagaacatagggaggaaaaaataccactacgtagcagctgcaataccaaaacactgctgttgcattacattagtccacatgccgaaa |
24455891 |
T |
|
| Q |
117 |
gccaactctaaattatgcagaaaatcacc |
145 |
Q |
| |
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||| |||||||||||||||||||||||| |
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| T |
24455890 |
accagctctaaattatgcagaaaatcacc |
24455862 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 62; E-Value: 5e-27
Query Start/End: Original strand, 20 - 145
Target Start/End: Original strand, 1615106 - 1615231
Alignment:
| Q |
20 |
agagacaaatcagaacccagggaggaaaaaacgccaccaggtagaagctgcagtgcaaaaacactgctgctgcactacattagtccacatgccgaaagcc |
119 |
Q |
| |
|
||||| |||||||||| | |||| ||||||| ||||| | ||| ||||||| | | |||||||||||||||||||||||||||||||||| |||| || |
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| T |
1615106 |
agagaaaaatcagaacacggggaagaaaaaatgccactacatagcagctgcaataccaaaacactgctgctgcactacattagtccacatgtagaaaacc |
1615205 |
T |
|
| Q |
120 |
aactctaaattatgcagaaaatcacc |
145 |
Q |
| |
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| |||||||||||||||||||||||| |
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|
| T |
1615206 |
agctctaaattatgcagaaaatcacc |
1615231 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 68; Significance: 1e-30; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 68; E-Value: 1e-30
Query Start/End: Original strand, 22 - 145
Target Start/End: Complemental strand, 50862664 - 50862541
Alignment:
| Q |
22 |
agacaaatcagaacccagggaggaaaaaacgccaccaggtagaagctgcagtgcaaaaacactgctgctgcactacattagtccacatgccgaaagccaa |
121 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||| | ||| ||||||||| | ||| || ||||| | ||||||||||||||||||||||||| || |
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| T |
50862664 |
agacaaatcagaacacagggaggaaaaaacgccactatgtaccagctgcagtaccaaagcagtgctgatacactacattagtccacatgccgaaaatcag |
50862565 |
T |
|
| Q |
122 |
ctctaaattatgcagaaaatcacc |
145 |
Q |
| |
|
|||||||||||||||||||||||| |
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|
| T |
50862564 |
ctctaaattatgcagaaaatcacc |
50862541 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 45; Significance: 8e-17; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 17 - 133
Target Start/End: Original strand, 27962430 - 27962546
Alignment:
| Q |
17 |
cacagagacaaatcagaacccagggaggaaaaaacgccaccaggtagaagctgcagtgcaaaaacactgctgctgcactacattagtccacatgccgaaa |
116 |
Q |
| |
|
||||||||||||||||||| |||||||||||||| || | | |||| || |||||| | ||||||| || |||||| |||||||||||| |||| |||| |
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| T |
27962430 |
cacagagacaaatcagaacgtagggaggaaaaaactccgctacgtagcaggtgcagtaccaaaacaccgcggctgcattacattagtccatatgctgaaa |
27962529 |
T |
|
| Q |
117 |
gccaactctaaattatg |
133 |
Q |
| |
|
||| ||||||| |||| |
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|
| T |
27962530 |
accagctctaaactatg |
27962546 |
T |
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