View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11479_low_2 (Length: 592)

Name: NF11479_low_2
Description: NF11479
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11479_low_2
NF11479_low_2
[»] chr2 (21 HSPs)
chr2 (22-584)||(34176225-34176786)
chr2 (22-330)||(34144104-34144412)
chr2 (22-204)||(34115010-34115192)
chr2 (506-585)||(9050117-9050196)
chr2 (392-499)||(2248953-2249061)
chr2 (506-577)||(16576252-16576323)
chr2 (506-570)||(35370402-35370466)
chr2 (408-495)||(16576215-16576302)
chr2 (429-500)||(16863445-16863515)
chr2 (506-584)||(16863460-16863538)
chr2 (428-495)||(38576958-38577025)
chr2 (506-584)||(13712743-13712821)
chr2 (392-487)||(13712948-13713045)
chr2 (452-500)||(13712766-13712814)
chr2 (512-584)||(38576930-38577002)
chr2 (537-584)||(1027407-1027454)
chr2 (509-584)||(13712912-13712987)
chr2 (289-330)||(34115268-34115309)
chr2 (506-570)||(16576421-16576485)
chr2 (507-582)||(34176882-34176955)
chr2 (508-584)||(35371117-35371193)
[»] chr7 (10 HSPs)
chr7 (367-493)||(43208671-43208798)
chr7 (506-584)||(23944080-23944158)
chr7 (368-469)||(32988565-32988667)
chr7 (506-583)||(32138880-32138957)
chr7 (522-577)||(34891385-34891440)
chr7 (506-577)||(34891537-34891608)
chr7 (408-485)||(27651540-27651616)
chr7 (451-495)||(7463858-7463902)
chr7 (506-554)||(29152350-29152398)
chr7 (451-495)||(32138907-32138951)
[»] chr5 (15 HSPs)
chr5 (506-583)||(2243310-2243387)
chr5 (428-581)||(972816-972963)
chr5 (506-583)||(14138549-14138626)
chr5 (516-577)||(39808232-39808293)
chr5 (512-584)||(7982373-7982445)
chr5 (502-582)||(22780339-22780419)
chr5 (506-585)||(973115-973194)
chr5 (448-487)||(14138552-14138591)
chr5 (444-495)||(41264532-41264583)
chr5 (509-568)||(41264536-41264595)
chr5 (520-570)||(39730313-39730363)
chr5 (448-493)||(2243339-2243384)
chr5 (543-584)||(17739907-17739948)
chr5 (427-499)||(17736916-17736987)
chr5 (537-585)||(40483716-40483764)
[»] chr1 (13 HSPs)
chr1 (506-583)||(68101-68178)
chr1 (506-583)||(52432665-52432742)
chr1 (506-583)||(10775167-10775244)
chr1 (506-562)||(46080975-46081031)
chr1 (508-580)||(3231964-3232036)
chr1 (451-495)||(10775173-10775217)
chr1 (428-495)||(2534437-2534504)
chr1 (448-487)||(24873772-24873811)
chr1 (448-487)||(24874605-24874644)
chr1 (518-584)||(2534409-2534475)
chr1 (434-495)||(52432654-52432715)
chr1 (429-493)||(3231946-3232010)
chr1 (428-499)||(38839678-38839747)
[»] chr8 (10 HSPs)
chr8 (429-499)||(7590332-7590402)
chr8 (506-584)||(32166628-32166706)
chr8 (512-585)||(6630531-6630604)
chr8 (507-584)||(12736059-12736136)
chr8 (506-583)||(35574634-35574711)
chr8 (429-492)||(34695817-34695880)
chr8 (410-499)||(31475009-31475096)
chr8 (516-577)||(37010345-37010406)
chr8 (543-584)||(40700887-40700928)
chr8 (429-469)||(39280941-39280981)
[»] chr6 (3 HSPs)
chr6 (509-575)||(32047181-32047247)
chr6 (515-575)||(23577164-23577224)
chr6 (506-570)||(32342604-32342668)
[»] chr3 (7 HSPs)
chr3 (506-570)||(39341203-39341267)
chr3 (506-569)||(54437810-54437873)
chr3 (508-584)||(20519289-20519365)
chr3 (455-495)||(39341213-39341253)
chr3 (518-584)||(54437653-54437719)
chr3 (448-497)||(54437813-54437862)
chr3 (507-575)||(42091793-42091861)
[»] chr4 (7 HSPs)
chr4 (506-577)||(15131575-15131646)
chr4 (428-499)||(20512844-20512915)
chr4 (506-585)||(22050856-22050935)
chr4 (448-499)||(25062497-25062548)
chr4 (523-584)||(25062340-25062401)
chr4 (522-570)||(20512834-20512882)
chr4 (537-577)||(22050732-22050772)
[»] scaffold0564 (1 HSPs)
scaffold0564 (366-499)||(5452-5586)
[»] scaffold0047 (1 HSPs)
scaffold0047 (506-575)||(62729-62798)
[»] scaffold1743 (1 HSPs)
scaffold1743 (428-495)||(771-837)


Alignment Details
Target: chr2 (Bit Score: 486; Significance: 0; HSPs: 21)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 486; E-Value: 0
Query Start/End: Original strand, 22 - 584
Target Start/End: Original strand, 34176225 - 34176786
Alignment:
Q  22 gtacacgagctcatcatccttcacctccataccaagcatgaaacaattcatcttcaaactctcgaatgttataagacccttgttgacatccataagcaaa 121  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  34176225 gtacacgagctcatcatccttcacctccataccaagcatgaaacaattcatcttcaaactctcaaatgttataagacccttgttgacatccataagcaaa 34176324  T
Q  122 tgaaacccgtagcaaagttcacctataaatgcttctgctcctaaactcgcaaccatggatggaaagtagtcctcaaaatccaagtcaaaatccaactcca 221  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34176325 tgaaacccgtagcaaagttcacctataaatgcttctgctcctaaactcgcaaccatggatggaaagtagtcctcaaaatccaagtcaaaatccaactcca 34176424  T
Q  222 tgtggaaacttgtgagtgaaacttcaagtagaagttgctaggaacaatgtgaaagcggatcaattattagcttgtgctagaagggtgttgtaagttgtgc 321  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||    
T  34176425 tgtggaaacttgtgagtgaaacttcaagtagaagttgctaggaacaatgtgaaaggggattaattattagcttgtgctagaagggtgttgtaagttgtgc 34176524  T
Q  322 tttttatatnnnnnnnnttgtgttttctaaattgtgtgaaactaagttttttctacattatcccttgaataattgagggtaatataccctatcagagaac 421  Q
    |||||||||        ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  34176525 tttttatat-aaaaaaattgtgttttctaaattgtgtgaaactaagttttttctacattatcccttgaataattgagggtaatataccctattagagaac 34176623  T
Q  422 aattatattttcttcatctttatttctacaatcagttaccattttcattttaagaatatcaaacttcttcatcttctttgttactcttacaatcagttac 521  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||  ||||||||||||||||||||    
T  34176624 aattatattttcttcatctttatttctacaatcagttaccattttcatcttaagaatatcaaacttcttcatcttcttcattactcttacaatcagttac 34176723  T
Q  522 cattttcatcttaggaacaccaaacttcttcatctccttcatttaacatatgatcttcatctc 584  Q
     ||| ||| |||||||||| |||| ||||||||||||||||||||||||||||||||||||||    
T  34176724 tattatcaccttaggaacatcaaaattcttcatctccttcatttaacatatgatcttcatctc 34176786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 22 - 330
Target Start/End: Original strand, 34144104 - 34144412
Alignment:
Q  22 gtacacgagctcatcatccttcacctccataccaagcatgaaacaattcatcttcaaactctcgaatgttataagacccttgttgacatccataagcaaa 121  Q
    |||||||||||| || ||| |||||||||  |||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||    
T  34144104 gtacacgagctcttcgtccctcacctccaagccaagcatgaaacaattcatcttcaaactctcaaatgttataagacccttgttggcatccataagcaaa 34144203  T
Q  122 tgaaacccgtagcaaagttcacctataaatgcttctgctcctaaactcgcaaccatggatggaaagtagtcctcaaaatccaagtcaaaatccaactcca 221  Q
    |||||||||| | ||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||| || ||||    
T  34144204 tgaaacccgttgtaaagttcacctataaaaccttctgctcctaaactcgcaaccatggatggaaagtagtcctcaaaatccatgtaaaaatctaaatcca 34144303  T
Q  222 tgtggaaacttgtgagtgaaacttcaagtagaagttgctaggaacaatgtgaaagcggatcaattattagcttgtgctagaagggtgttgtaagttgtgc 321  Q
    |||| |||  |||||||||||||| ||||||| |||||||| ||||||| |||||  ||| |||||||||||||||||||||||||||  ||||||||||    
T  34144304 tgtgaaaaggtgtgagtgaaactttaagtagaggttgctagtaacaatgcgaaaggagattaattattagcttgtgctagaagggtgtgttaagttgtgc 34144403  T
Q  322 tttttatat 330  Q
    |||||||||    
T  34144404 tttttatat 34144412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 22 - 204
Target Start/End: Original strand, 34115010 - 34115192
Alignment:
Q  22 gtacacgagctcatcatccttcacctccataccaagcatgaaacaattcatcttcaaactctcgaatgttataagacccttgttgacatccataagcaaa 121  Q
    ||||||||| || |||||| |||||||||  |||||||||||||||||||||||||| ||||| |||||||||||||| ||||| |||||||||||||||    
T  34115010 gtacacgagttcttcatccctcacctccaagccaagcatgaaacaattcatcttcaagctctcaaatgttataagacctttgttcacatccataagcaaa 34115109  T
Q  122 tgaaacccgtagcaaagttcacctataaatgcttctgctcctaaactcgcaaccatggatggaaagtagtcctcaaaatccaa 204  Q
     |||| || | ||||||||||||||||||  |||||||||||||||  | || ||||||||||||||||||||||||||||||    
T  34115110 cgaaatccattgcaaagttcacctataaacccttctgctcctaaacgtgaaatcatggatggaaagtagtcctcaaaatccaa 34115192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 506 - 585
Target Start/End: Complemental strand, 9050196 - 9050117
Alignment:
Q  506 tcttacaatcagttaccattttcatcttaggaacaccaaacttcttcatctccttcatttaacatatgatcttcatctca 585  Q
    |||||| |||||||||||||||||| | | ||||| ||||||||||||||||| ||||| |||||||||||| |||||||    
T  9050196 tcttacgatcagttaccattttcatatgaagaacaacaaacttcttcatctccatcattcaacatatgatctccatctca 9050117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 392 - 499
Target Start/End: Complemental strand, 2249061 - 2248953
Alignment:
Q  392 aattgagggtaatatacc-ctatcagagaacaattatattttcttcatctttatttctacaatcagttaccattttcattttaagaatatcaaacttctt 490  Q
    |||||||| |||| |||| |||||| |||| ||| ||||||||||||||||||||  || ||| ||||||||||||||| | || || || |||||||||    
T  2249061 aattgaggataatttacctctatcaaagaaaaatcatattttcttcatctttattcttagaattagttaccattttcatctcaaaaacattaaacttctt 2248962  T
Q  491 catcttctt 499  Q
    |||||||||    
T  2248961 catcttctt 2248953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 506 - 577
Target Start/End: Original strand, 16576252 - 16576323
Alignment:
Q  506 tcttacaatcagttaccattttcatcttaggaacaccaaacttcttcatctccttcatttaacatatgatct 577  Q
    ||||||||||| ||||||||||| ||| | ||||| ||||||||||||||||||||||| ||||| ||||||    
T  16576252 tcttacaatcaattaccattttcctctcaagaacatcaaacttcttcatctccttcattcaacatgtgatct 16576323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 506 - 570
Target Start/End: Original strand, 35370402 - 35370466
Alignment:
Q  506 tcttacaatcagttaccattttcatcttaggaacaccaaacttcttcatctccttcatttaacat 570  Q
    |||||||||||||||||||||| |||| | ||| ||||||||||||| ||||||||||| |||||    
T  35370402 tcttacaatcagttaccattttaatctcaagaataccaaacttcttcgtctccttcattcaacat 35370466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 408 - 495
Target Start/End: Original strand, 16576215 - 16576302
Alignment:
Q  408 ccctatcagagaacaattatattttcttcatctttatttctacaatcagttaccattttcattttaagaatatcaaacttcttcatct 495  Q
    |||||||| |||| |||||| ||||||||| |||| ||  |||||||| ||||||||||| | | ||||| |||||||||||||||||    
T  16576215 ccctatcaaagaaaaattatcttttcttcaccttttttcttacaatcaattaccattttcctctcaagaacatcaaacttcttcatct 16576302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 429 - 500
Target Start/End: Original strand, 16863445 - 16863515
Alignment:
Q  429 ttttcttcatctttatttctacaatcagttaccattttcattttaagaatatcaaacttcttcatcttcttt 500  Q
    |||||||| ||||||||  |||||||||||||||||||||| | ||||| |||||| |||||||||||||||    
T  16863445 ttttcttc-tctttattcttacaatcagttaccattttcatctcaagaacatcaaatttcttcatcttcttt 16863515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 506 - 584
Target Start/End: Original strand, 16863460 - 16863538
Alignment:
Q  506 tcttacaatcagttaccattttcatcttaggaacaccaaacttcttcatctccttcatttaacatatgatcttcatctc 584  Q
    ||||||||||||||||||||||||||| | ||||| |||| |||||||||| ||| ||| || || |||||| ||||||    
T  16863460 tcttacaatcagttaccattttcatctcaagaacatcaaatttcttcatcttctttattcaatatgtgatctacatctc 16863538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 428 - 495
Target Start/End: Complemental strand, 38577025 - 38576958
Alignment:
Q  428 attttcttcatctttatttctacaatcagttaccattttcattttaagaatatcaaacttcttcatct 495  Q
    ||||||||||| ||||||| || ||||||||||||||||||| | ||||| || ||| ||||||||||    
T  38577025 attttcttcatatttatttttataatcagttaccattttcatctaaagaacattaaagttcttcatct 38576958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 506 - 584
Target Start/End: Complemental strand, 13712821 - 13712743
Alignment:
Q  506 tcttacaatcagttaccattttcatcttaggaacaccaaacttcttcatctccttcatttaacatatgatcttcatctc 584  Q
    |||||| |||||||||||||| ||||||| ||||| |||||||||| |||| ||| ||| ||||| | |||| ||||||    
T  13712821 tcttactatcagttaccatttccatcttaagaacatcaaacttctttatcttctttattcaacatctaatctccatctc 13712743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 392 - 487
Target Start/End: Complemental strand, 13713045 - 13712948
Alignment:
Q  392 aattgagggtaatataccctatcagagaacaat--tatattttcttcatctttatttctacaatcagttaccattttcattttaagaatatcaaactt 487  Q
    |||||||| |||| |||||||||| |||| |||  |||||||| || || |||||| |||||||| ||||||||||| || |||| ||| ||||||||    
T  13713045 aattgaggataatttaccctatcaaagaaaaatcatatattttttttatatttattcctacaatcggttaccatttttatcttaaaaatttcaaactt 13712948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 452 - 500
Target Start/End: Complemental strand, 13712814 - 13712766
Alignment:
Q  452 atcagttaccattttcattttaagaatatcaaacttcttcatcttcttt 500  Q
    |||||||||||||| ||| ||||||| |||||||||||| |||||||||    
T  13712814 atcagttaccatttccatcttaagaacatcaaacttctttatcttcttt 13712766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 512 - 584
Target Start/End: Complemental strand, 38577002 - 38576930
Alignment:
Q  512 aatcagttaccattttcatcttaggaacaccaaacttcttcatctccttcatttaacatatgatcttcatctc 584  Q
    ||||||||||||||||||||| | |||||  ||| ||||||||||| |||||| ||||| |||| | ||||||    
T  38577002 aatcagttaccattttcatctaaagaacattaaagttcttcatctctttcattcaacatgtgatttccatctc 38576930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 537 - 584
Target Start/End: Complemental strand, 1027454 - 1027407
Alignment:
Q  537 aacaccaaacttcttcatctccttcatttaacatatgatcttcatctc 584  Q
    |||| |||||||||| ||||  ||||||||||||||||||||||||||    
T  1027454 aacatcaaacttctttatcttattcatttaacatatgatcttcatctc 1027407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 509 - 584
Target Start/End: Complemental strand, 13712987 - 13712912
Alignment:
Q  509 tacaatcagttaccattttcatcttaggaacaccaaacttcttcatctccttcatttaacatatgatcttcatctc 584  Q
    ||||||| ||||||||||| ||||||  ||   ||||||| || |||||||||||||||||| |||||| ||||||    
T  13712987 tacaatcggttaccatttttatcttaaaaatttcaaacttttttatctccttcatttaacatgtgatctacatctc 13712912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 289 - 330
Target Start/End: Original strand, 34115268 - 34115309
Alignment:
Q  289 tagcttgtgctagaagggtgttgtaagttgtgctttttatat 330  Q
    |||||||||||||||||||||  |||||||||||| ||||||    
T  34115268 tagcttgtgctagaagggtgtgttaagttgtgcttcttatat 34115309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 506 - 570
Target Start/End: Original strand, 16576421 - 16576485
Alignment:
Q  506 tcttacaatcagttaccattttcatcttaggaacaccaaacttcttcatctccttcatttaacat 570  Q
    ||||||||||| ||| ||||||||| | |  |||| ||||| ||||||| |||||||||||||||    
T  16576421 tcttacaatcatttatcattttcatttcaaaaacaacaaacatcttcatatccttcatttaacat 16576485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 507 - 582
Target Start/End: Original strand, 34176882 - 34176955
Alignment:
Q  507 cttacaatcagttaccattttcatcttaggaacaccaaacttcttcatctccttcatttaacatatgatcttcatc 582  Q
    |||||||| ||||||||||||||||| | ||  ||||||||| | ||||| ||||||| ||||| |||| ||||||    
T  34176882 cttacaattagttaccattttcatctcaaga--accaaacttgtacatcttcttcattcaacatgtgatattcatc 34176955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 508 - 584
Target Start/End: Original strand, 35371117 - 35371193
Alignment:
Q  508 ttacaatcagttaccattttcatcttaggaacaccaaacttcttcatctccttcatttaacatatgatcttcatctc 584  Q
    ||||||||| ||||||||||||| | | ||||| ||||||||||  |  |||||||||||||| |||| | ||||||    
T  35371117 ttacaatcatttaccattttcatatcaagaacatcaaacttctttgttaccttcatttaacatgtgatttccatctc 35371193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 53; Significance: 4e-21; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 367 - 493
Target Start/End: Original strand, 43208671 - 43208798
Alignment:
Q  367 gttttttctacattatcccttgaataattgagggtaatata-ccctatcagagaacaa-ttatattttcttcatctttatttctacaatcagttaccatt 464  Q
    |||||||||||||||||||||||  ||||||||||||| || |||||||  | || || |||| |||||||||||||||||  |||||||| ||||||||    
T  43208671 gttttttctacattatcccttgatgaattgagggtaatttatccctatcgaataaaaagttat-ttttcttcatctttattcttacaatcaattaccatt 43208769  T
Q  465 ttcattttaagaatatcaaacttcttcat 493  Q
    || ||||||||||||||||| | ||||||    
T  43208770 tttattttaagaatatcaaattccttcat 43208798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 506 - 584
Target Start/End: Original strand, 23944080 - 23944158
Alignment:
Q  506 tcttacaatcagttaccattttcatcttaggaacaccaaacttcttcatctccttcatttaacatatgatcttcatctc 584  Q
    ||||||||| |||| |||||||||||||| ||||| ||||||||||| |||| |||||| ||||| |||| | ||||||    
T  23944080 tcttacaattagttgccattttcatcttaagaacatcaaacttcttcttctctttcattcaacatgtgatttccatctc 23944158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 368 - 469
Target Start/End: Complemental strand, 32988667 - 32988565
Alignment:
Q  368 ttttttctacattatcccttgaataattgagggtaatataccc-tatcagagaacaattatattttcttcatctttatttctacaatcagttaccatttt 466  Q
    |||||| |||||||||||| ||  ||||| ||||||| ||| | ||||| |||| ||| ||||||||||||||||||||  ||||||||| || ||||||    
T  32988667 ttttttatacattatccctcgatgaattgggggtaatttacacatatcaaagaaaaatcatattttcttcatctttattcttacaatcagctatcatttt 32988568  T
Q  467 cat 469  Q
    |||    
T  32988567 cat 32988565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 506 - 583
Target Start/End: Complemental strand, 32138957 - 32138880
Alignment:
Q  506 tcttacaatcagttaccattttcatcttaggaacaccaaacttcttcatctccttcatttaacatatgatcttcatct 583  Q
    ||||| ||||| ||||||||||||||||| ||||| |||| ||||||||||||||| || ||||| | |||| |||||    
T  32138957 tcttaaaatcaattaccattttcatcttaagaacatcaaaattcttcatctccttcgttcaacatgtaatctccatct 32138880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 522 - 577
Target Start/End: Original strand, 34891385 - 34891440
Alignment:
Q  522 cattttcatcttaggaacaccaaacttcttcatctccttcatttaacatatgatct 577  Q
    ||||||||| ||| ||||| |||||||||| |||| ||||||||||||| ||||||    
T  34891385 cattttcatattaagaacatcaaacttctttatcttcttcatttaacatgtgatct 34891440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 506 - 577
Target Start/End: Original strand, 34891537 - 34891608
Alignment:
Q  506 tcttacaatcagttaccattttcatcttaggaacaccaaacttcttcatctccttcatttaacatatgatct 577  Q
    |||||| || ||||| |||||| |||| | ||||| |||| |||||||||||||||||| ||||| ||||||    
T  34891537 tcttactattagttatcattttgatctcaagaacatcaaatttcttcatctccttcattcaacatgtgatct 34891608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 408 - 485
Target Start/End: Complemental strand, 27651616 - 27651540
Alignment:
Q  408 ccctatcagagaacaattatattttcttcatctttatttctacaatcagttaccattttcattttaagaatatcaaac 485  Q
    |||||||| |||| ||||   |||||||||||||||||| |||||| ||| ||||||||||| | ||||| |||||||    
T  27651616 ccctatcaaagaaaaattcatttttcttcatctttatttttacaat-agtaaccattttcatctcaagaacatcaaac 27651540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 451 - 495
Target Start/End: Original strand, 7463858 - 7463902
Alignment:
Q  451 aatcagttaccattttcattttaagaatatcaaacttcttcatct 495  Q
    |||| |||| ||||||||||| ||||| |||||||||||||||||    
T  7463858 aatcggttatcattttcatttgaagaacatcaaacttcttcatct 7463902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 506 - 554
Target Start/End: Complemental strand, 29152398 - 29152350
Alignment:
Q  506 tcttacaatcagttaccattttcatcttaggaacaccaaacttcttcat 554  Q
    |||||||||||||||| |||||||||| |  |||| |||||||||||||    
T  29152398 tcttacaatcagttactattttcatctcaataacatcaaacttcttcat 29152350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 451 - 495
Target Start/End: Complemental strand, 32138951 - 32138907
Alignment:
Q  451 aatcagttaccattttcattttaagaatatcaaacttcttcatct 495  Q
    ||||| ||||||||||||| ||||||| |||||| ||||||||||    
T  32138951 aatcaattaccattttcatcttaagaacatcaaaattcttcatct 32138907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 46; Significance: 6e-17; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 506 - 583
Target Start/End: Complemental strand, 2243387 - 2243310
Alignment:
Q  506 tcttacaatcagttaccattttcatcttaggaacaccaaacttcttcatctccttcatttaacatatgatcttcatct 583  Q
    ||||||||| ||||||||||||||||| | ||||| ||||||||||||| ||||||||| ||||| |||||| |||||    
T  2243387 tcttacaattagttaccattttcatctcaagaacatcaaacttcttcatatccttcattcaacatgtgatctccatct 2243310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 428 - 581
Target Start/End: Original strand, 972816 - 972963
Alignment:
Q  428 attttcttcatctttatttctacaatcagttaccattttcattttaagaatatcaaacttcttcatcttctttgttactcttacaatcagttaccatttt 527  Q
    ||||| ||| ||||||||| || ||| ||||| ||||||||| | ||||| |||||||||||||||||      ||| | ||  |||||||| |||||||    
T  972816 atttttttcctctttatttttaaaattagttatcattttcatctcaagaacatcaaacttcttcatct------ttatttttgaaatcagttgccatttt 972909  T
Q  528 catcttaggaacaccaaacttcttcatctccttcatttaacatatgatcttcat 581  Q
    ||||  | ||| | |||| ||||||||||| |||||||||||| | ||||||||    
T  972910 catcacaagaaaatcaaatttcttcatctctttcatttaacatgttatcttcat 972963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 506 - 583
Target Start/End: Original strand, 14138549 - 14138626
Alignment:
Q  506 tcttacaatcagttaccattttcatcttaggaacaccaaacttcttcatctccttcatttaacatatgatcttcatct 583  Q
    ||||||||||| ||||||||||||||||| ||| | |||||||  ||||||| |||||| ||||| | ||||||||||    
T  14138549 tcttacaatcaattaccattttcatcttaagaatatcaaactttctcatctctttcattcaacatgtaatcttcatct 14138626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 516 - 577
Target Start/End: Complemental strand, 39808293 - 39808232
Alignment:
Q  516 agttaccattttcatcttaggaacaccaaacttcttcatctccttcatttaacatatgatct 577  Q
    ||||| |||||||| |||| || || ||||||| ||||||||||||||||||||||||||||    
T  39808293 agttatcattttcaccttaagaccatcaaactttttcatctccttcatttaacatatgatct 39808232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 512 - 584
Target Start/End: Complemental strand, 7982445 - 7982373
Alignment:
Q  512 aatcagttaccattttcatcttaggaacaccaaacttcttcatctccttcatttaacatatgatcttcatctc 584  Q
    ||||||||||||||||||||||  ||||| |||| ||||||  ||| ||| |||||||| |||| ||||||||    
T  7982445 aatcagttaccattttcatcttgagaacatcaaatttcttcgactctttcttttaacatgtgatattcatctc 7982373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 502 - 582
Target Start/End: Complemental strand, 22780419 - 22780339
Alignment:
Q  502 ttactcttacaatcagttaccattttcatcttaggaacaccaaacttcttcatctccttcatttaacatatgatcttcatc 582  Q
    ||||| || |||| ||| ||||||||||||| |  ||||  |||||||||||| ||||||||| ||||| |||||||||||    
T  22780419 ttactatttcaatgagtcaccattttcatctcaaaaacaataaacttcttcatatccttcattcaacatgtgatcttcatc 22780339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 506 - 585
Target Start/End: Original strand, 973115 - 973194
Alignment:
Q  506 tcttacaatcagttaccattttcatcttaggaacaccaaacttcttcatctccttcatttaacatatgatcttcatctca 585  Q
    ||||||||| ||||| |||||| |||| |  ||||  ||| |||||||||||||| ||| ||||| ||||||||||||||    
T  973115 tcttacaattagttatcatttttatctcaaaaacattaaatttcttcatctcctttattcaacatgtgatcttcatctca 973194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 448 - 487
Target Start/End: Original strand, 14138552 - 14138591
Alignment:
Q  448 tacaatcagttaccattttcattttaagaatatcaaactt 487  Q
    |||||||| ||||||||||||| |||||||||||||||||    
T  14138552 tacaatcaattaccattttcatcttaagaatatcaaactt 14138591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 444 - 495
Target Start/End: Original strand, 41264532 - 41264583
Alignment:
Q  444 tttctacaatcagttaccattttcattttaagaatatcaaacttcttcatct 495  Q
    ||||||||||||||||| |||||||| | ||||| |||||| ||||||||||    
T  41264532 tttctacaatcagttacaattttcatatcaagaacatcaaatttcttcatct 41264583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 509 - 568
Target Start/End: Original strand, 41264536 - 41264595
Alignment:
Q  509 tacaatcagttaccattttcatcttaggaacaccaaacttcttcatctccttcatttaac 568  Q
    ||||||||||||| |||||||| | | ||||| |||| ||||||||||| ||||||||||    
T  41264536 tacaatcagttacaattttcatatcaagaacatcaaatttcttcatctctttcatttaac 41264595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 520 - 570
Target Start/End: Complemental strand, 39730363 - 39730313
Alignment:
Q  520 accattttcatcttaggaacaccaaacttcttcatctccttcatttaacat 570  Q
    ||||||||||||| | ||||| ||||||| |||||||| ||||||||||||    
T  39730363 accattttcatctcaagaacatcaaactttttcatctctttcatttaacat 39730313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 448 - 493
Target Start/End: Complemental strand, 2243384 - 2243339
Alignment:
Q  448 tacaatcagttaccattttcattttaagaatatcaaacttcttcat 493  Q
    |||||| ||||||||||||||| | ||||| |||||||||||||||    
T  2243384 tacaattagttaccattttcatctcaagaacatcaaacttcttcat 2243339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 543 - 584
Target Start/End: Original strand, 17739907 - 17739948
Alignment:
Q  543 aaacttcttcatctccttcatttaacatatgatcttcatctc 584  Q
    |||||||||||||| ||||||||||||| |||| ||||||||    
T  17739907 aaacttcttcatcttcttcatttaacatgtgattttcatctc 17739948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 427 - 499
Target Start/End: Complemental strand, 17736987 - 17736916
Alignment:
Q  427 tattttcttcatctttatttctacaatcagttaccattttcattttaagaatatcaaacttcttcatcttctt 499  Q
    |||||| ||||||||||| | |||||||  |||||||||| || |||||||||||||| ||||| | ||||||    
T  17736987 tatttttttcatctttatct-tacaatcgattaccatttttatcttaagaatatcaaatttctttaccttctt 17736916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 537 - 585
Target Start/End: Original strand, 40483716 - 40483764
Alignment:
Q  537 aacaccaaacttcttcatctccttcatttaacatatgatcttcatctca 585  Q
    |||| ||||||||||||||||  ||||| ||||| ||||||||||||||    
T  40483716 aacatcaaacttcttcatctcactcattcaacatgtgatcttcatctca 40483764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 506 - 583
Target Start/End: Original strand, 68101 - 68178
Alignment:
Q  506 tcttacaatcagttaccattttcatcttaggaacaccaaacttcttcatctccttcatttaacatatgatcttcatct 583  Q
    ||||||||| |||||||||||| || | | ||||| | ||||||||||||||||||||||||||| |||||| |||||    
T  68101 tcttacaatgagttaccatttttatttcaagaacatctaacttcttcatctccttcatttaacatgtgatctccatct 68178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 506 - 583
Target Start/End: Original strand, 52432665 - 52432742
Alignment:
Q  506 tcttacaatcagttaccattttcatcttaggaacaccaaacttcttcatctccttcatttaacatatgatcttcatct 583  Q
    ||||| ||||| ||||||||||||||| | |||||  |||||||||||||||||||||||||||  |||||| |||||    
T  52432665 tcttataatcaattaccattttcatctcaagaacattaaacttcttcatctccttcatttaacaagtgatctccatct 52432742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 506 - 583
Target Start/End: Original strand, 10775167 - 10775244
Alignment:
Q  506 tcttacaatcagttaccattttcatcttaggaacaccaaacttcttcatctccttcatttaacatatgatcttcatct 583  Q
    ||||| ||||| ||||||||||||||||| ||||| |||||||||||||||| ||| || ||||| | || |||||||    
T  10775167 tcttagaatcaattaccattttcatcttaagaacatcaaacttcttcatctctttcgttcaacatctaattttcatct 10775244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 506 - 562
Target Start/End: Original strand, 46080975 - 46081031
Alignment:
Q  506 tcttacaatcagttaccattttcatcttaggaacaccaaacttcttcatctccttca 562  Q
    ||||||||||| ||||||||||||||| | |||||  ||||||||||||||||||||    
T  46080975 tcttacaatcaattaccattttcatctcaagaacattaaacttcttcatctccttca 46081031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 508 - 580
Target Start/End: Original strand, 3231964 - 3232036
Alignment:
Q  508 ttacaatcagttaccattttcatcttaggaacaccaaacttcttcatctccttcatttaacatatgatcttca 580  Q
    |||||||||||| | |||||||||| | ||||| ||||||||||||| || |||||| ||||| |||| ||||    
T  3231964 ttacaatcagttgctattttcatctcaagaacaacaaacttcttcatgtcattcattcaacatgtgatattca 3232036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 451 - 495
Target Start/End: Original strand, 10775173 - 10775217
Alignment:
Q  451 aatcagttaccattttcattttaagaatatcaaacttcttcatct 495  Q
    ||||| ||||||||||||| ||||||| |||||||||||||||||    
T  10775173 aatcaattaccattttcatcttaagaacatcaaacttcttcatct 10775217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 428 - 495
Target Start/End: Complemental strand, 2534504 - 2534437
Alignment:
Q  428 attttcttcatctttatttctacaatcagttaccattttcattttaagaatatcaaacttcttcatct 495  Q
    ||||||||||||||||||| || ||| | |||||| |||||| | || || |||||||||||||||||    
T  2534504 attttcttcatctttatttttaaaataatttaccactttcatctcaaaaacatcaaacttcttcatct 2534437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 448 - 487
Target Start/End: Original strand, 24873772 - 24873811
Alignment:
Q  448 tacaatcagttaccattttcattttaagaatatcaaactt 487  Q
    |||||||| ||||||||||||||||||||| |||||||||    
T  24873772 tacaatcaattaccattttcattttaagaagatcaaactt 24873811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 448 - 487
Target Start/End: Original strand, 24874605 - 24874644
Alignment:
Q  448 tacaatcagttaccattttcattttaagaatatcaaactt 487  Q
    |||||||| ||||||||||||||||||||| |||||||||    
T  24874605 tacaatcaattaccattttcattttaagaagatcaaactt 24874644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 518 - 584
Target Start/End: Complemental strand, 2534475 - 2534409
Alignment:
Q  518 ttaccattttcatcttaggaacaccaaacttcttcatctccttcatttaacatatgatcttcatctc 584  Q
    |||||| |||||||| |  |||| ||||||||||||||||||| ||||  |||| ||||||||||||    
T  2534475 ttaccactttcatctcaaaaacatcaaacttcttcatctccttaatttcgcataagatcttcatctc 2534409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 434 - 495
Target Start/End: Original strand, 52432654 - 52432715
Alignment:
Q  434 ttcatctttatttctacaatcagttaccattttcattttaagaatatcaaacttcttcatct 495  Q
    ||||||||||||  || ||||| ||||||||||||| | ||||| || ||||||||||||||    
T  52432654 ttcatctttattcttataatcaattaccattttcatctcaagaacattaaacttcttcatct 52432715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 429 - 493
Target Start/End: Original strand, 3231946 - 3232010
Alignment:
Q  429 ttttcttcatctttatttctacaatcagttaccattttcattttaagaatatcaaacttcttcat 493  Q
    |||||||||| ||||| | ||||||||||| | |||||||| | ||||| | |||||||||||||    
T  3231946 ttttcttcatgtttatctttacaatcagttgctattttcatctcaagaacaacaaacttcttcat 3232010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 428 - 499
Target Start/End: Complemental strand, 38839747 - 38839678
Alignment:
Q  428 attttcttcatctttatttctacaatcagttaccattttcattttaagaatatcaaacttcttcatcttctt 499  Q
    ||||| ||||||||||||  |||||| |||||  |||||||| | ||||| ||||||| |||||||||||||    
T  38839747 atttttttcatctttattcttacaattagtta--attttcatctcaagaacatcaaacctcttcatcttctt 38839678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 429 - 499
Target Start/End: Complemental strand, 7590402 - 7590332
Alignment:
Q  429 ttttcttcatctttatttctacaatcagttaccattttcattttaagaatatcaaacttcttcatcttctt 499  Q
    |||||||| ||||||||  ||||||| ||||||| |||||||| ||||| |||||| ||||||||||||||    
T  7590402 ttttcttcgtctttattcttacaatcggttaccaatttcatttcaagaacatcaaatttcttcatcttctt 7590332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 506 - 584
Target Start/End: Complemental strand, 32166706 - 32166628
Alignment:
Q  506 tcttacaatcagttaccattttcatcttaggaacaccaaacttcttcatctccttcatttaacatatgatcttcatctc 584  Q
    |||||| |||| ||| ||||||||||| | ||||| ||||||||||||||||||| ||| ||||| | |||||||||||    
T  32166706 tcttactatcaattatcattttcatctcaagaacatcaaacttcttcatctcctttattcaacatgtaatcttcatctc 32166628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 512 - 585
Target Start/End: Complemental strand, 6630604 - 6630531
Alignment:
Q  512 aatcagttaccattttcatcttaggaacaccaaacttcttcatctccttcatttaacatatgatcttcatctca 585  Q
    ||||| ||||||||||||||||| || ||  ||| |||||||||||||||||||||||  |||||| |||||||    
T  6630604 aatcaattaccattttcatcttaagatcattaaatttcttcatctccttcatttaacaagtgatctccatctca 6630531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 507 - 584
Target Start/End: Original strand, 12736059 - 12736136
Alignment:
Q  507 cttacaatcagttaccattttcatcttaggaacaccaaacttcttcatctccttcatttaacatatgatcttcatctc 584  Q
    |||||||| ||||||||||| |||||||  |||| |||||||||||||||||||| || ||||| |||| | ||||||    
T  12736059 cttacaattagttaccatttccatcttaataacatcaaacttcttcatctccttcgttcaacatgtgatgtccatctc 12736136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 506 - 583
Target Start/End: Complemental strand, 35574711 - 35574634
Alignment:
Q  506 tcttacaatcagttaccattttcatcttaggaacaccaaacttcttcatctccttcatttaacatatgatcttcatct 583  Q
    ||||||||| |||||| |||||||||||| ||||| |||| || |||||||| |||||| ||||| | |||| |||||    
T  35574711 tcttacaattagttacgattttcatcttaagaacatcaaattttttcatctcattcattcaacatgtcatctccatct 35574634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 429 - 492
Target Start/End: Original strand, 34695817 - 34695880
Alignment:
Q  429 ttttcttcatctttatttctacaatcagttaccattttcattttaagaatatcaaacttcttca 492  Q
    |||||||||||||||||  |||||||||||| ||||||| ||| || | ||||||| |||||||    
T  34695817 ttttcttcatctttattcttacaatcagttatcattttcttttcaaaattatcaaatttcttca 34695880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 410 - 499
Target Start/End: Original strand, 31475009 - 31475096
Alignment:
Q  410 ctatcagagaacaattatattttcttcatctttatttctacaatcagttaccattttcattttaagaatatcaaacttcttcatcttctt 499  Q
    |||||| |||| ||| ||||||||||| |||| |||| |  |||||||||| ||||| || | ||||| |||||||||||||||||||||    
T  31475009 ctatcaaagaaaaatcatattttcttcctctt-atttttg-aatcagttactatttttatctcaagaacatcaaacttcttcatcttctt 31475096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 516 - 577
Target Start/End: Complemental strand, 37010406 - 37010345
Alignment:
Q  516 agttaccattttcatcttaggaacaccaaacttcttcatctccttcatttaacatatgatct 577  Q
    ||||||||||||||||| |  |||| ||||||| ||||| || |||||||||||| ||||||    
T  37010406 agttaccattttcatctcaaaaacatcaaacttattcatttctttcatttaacatgtgatct 37010345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 543 - 584
Target Start/End: Original strand, 40700887 - 40700928
Alignment:
Q  543 aaacttcttcatctccttcatttaacatatgatcttcatctc 584  Q
    |||||| ||||| |||||||||||||||| ||||||||||||    
T  40700887 aaactttttcatatccttcatttaacatacgatcttcatctc 40700928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 429 - 469
Target Start/End: Original strand, 39280941 - 39280981
Alignment:
Q  429 ttttcttcatctttatttctacaatcagttaccattttcat 469  Q
    |||||||||||||||||  || |||||||||||||||||||    
T  39280941 ttttcttcatctttattcttaaaatcagttaccattttcat 39280981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 509 - 575
Target Start/End: Original strand, 32047181 - 32047247
Alignment:
Q  509 tacaatcagttaccattttcatcttaggaacaccaaacttcttcatctccttcatttaacatatgat 575  Q
    |||| ||| ||||||||||||||| | ||||| |||||||||||||||| |||||| ||||||||||    
T  32047181 tacattcatttaccattttcatctcaagaacatcaaacttcttcatctcattcattcaacatatgat 32047247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 515 - 575
Target Start/End: Original strand, 23577164 - 23577224
Alignment:
Q  515 cagttaccattttcatcttaggaacaccaaacttcttcatctccttcatttaacatatgat 575  Q
    |||||||||||||||||| |  |||| || |||||| ||||||||||||| ||||| ||||    
T  23577164 cagttaccattttcatctcaaaaacatcatacttctccatctccttcattcaacatctgat 23577224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 506 - 570
Target Start/End: Original strand, 32342604 - 32342668
Alignment:
Q  506 tcttacaatcagttaccattttcatcttaggaacaccaaacttcttcatctccttcatttaacat 570  Q
    ||||||||||| ||| ||||||||||| |  |||| ||||||| |||||||| |||||| |||||    
T  32342604 tcttacaatcaattatcattttcatctcaaaaacatcaaactttttcatctcattcattcaacat 32342668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.00000000001; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 506 - 570
Target Start/End: Original strand, 39341203 - 39341267
Alignment:
Q  506 tcttacaatcagttaccattttcatcttaggaacaccaaacttcttcatctccttcatttaacat 570  Q
    |||||| || ||||||||||||||||||| ||| | ||||||| ||||||||||||||| |||||    
T  39341203 tcttactatgagttaccattttcatcttaagaatatcaaactttttcatctccttcattcaacat 39341267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 506 - 569
Target Start/End: Original strand, 54437810 - 54437873
Alignment:
Q  506 tcttacaatcagttaccattttcatcttaggaacaccaaacttcttcatctccttcatttaaca 569  Q
    |||||||||||||||||||||| |||| |  |||| ||||||||||||||| | ||||||||||    
T  54437810 tcttacaatcagttaccattttaatctcaaaaacatcaaacttcttcatcttcctcatttaaca 54437873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 508 - 584
Target Start/End: Complemental strand, 20519365 - 20519289
Alignment:
Q  508 ttacaatcagttaccattttcatcttaggaacaccaaacttcttcatctccttcatttaacatatgatcttcatctc 584  Q
    |||||||| || ||||||||||||| | ||||  |||| ||||||||||| |||||| ||||| |||||| ||||||    
T  20519365 ttacaatccgtaaccattttcatctcaagaacgtcaaatttcttcatctctttcattaaacatgtgatctccatctc 20519289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 455 - 495
Target Start/End: Original strand, 39341213 - 39341253
Alignment:
Q  455 agttaccattttcattttaagaatatcaaacttcttcatct 495  Q
    ||||||||||||||| ||||||||||||||||| |||||||    
T  39341213 agttaccattttcatcttaagaatatcaaactttttcatct 39341253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 518 - 584
Target Start/End: Original strand, 54437653 - 54437719
Alignment:
Q  518 ttaccattttcatcttaggaacaccaaacttcttcatctccttcatttaacatatgatcttcatctc 584  Q
    ||||||||||||||| |  ||||  |||||||||||| ||||||||||||||| | | |||||||||    
T  54437653 ttaccattttcatctcaataacattaaacttcttcatatccttcatttaacatgtaaacttcatctc 54437719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 448 - 497
Target Start/End: Original strand, 54437813 - 54437862
Alignment:
Q  448 tacaatcagttaccattttcattttaagaatatcaaacttcttcatcttc 497  Q
    ||||||||||||||||||| || | || || |||||||||||||||||||    
T  54437813 tacaatcagttaccattttaatctcaaaaacatcaaacttcttcatcttc 54437862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 507 - 575
Target Start/End: Complemental strand, 42091861 - 42091793
Alignment:
Q  507 cttacaatcagttaccattttcatcttaggaacaccaaacttcttcatctccttcatttaacatatgat 575  Q
    |||||||| | ||| ||||||||||| |  |||| ||||||| |||||||| |||||||||||| ||||    
T  42091861 cttacaattaattatcattttcatctcaaaaacatcaaactttttcatctctttcatttaacatgtgat 42091793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 36; Significance: 0.00000000006; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 506 - 577
Target Start/End: Complemental strand, 15131646 - 15131575
Alignment:
Q  506 tcttacaatcagttaccattttcatcttaggaacaccaaacttcttcatctccttcatttaacatatgatct 577  Q
    |||||| ||||||||||||||| |||| | ||||| |||| |||||||||||||||||| | ||| ||||||    
T  15131646 tcttactatcagttaccatttttatctcaagaacatcaaatttcttcatctccttcattcagcatgtgatct 15131575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 428 - 499
Target Start/End: Complemental strand, 20512915 - 20512844
Alignment:
Q  428 attttcttcatctttatttctacaatcagttaccattttcattttaagaatatcaaacttcttcatcttctt 499  Q
    ||||||||||||||||||| || ||||| ||  ||||||||| |||  || |||||||||||||||||||||    
T  20512915 attttcttcatctttatttttaaaatcaattgtcattttcatcttataaacatcaaacttcttcatcttctt 20512844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 506 - 585
Target Start/End: Original strand, 22050856 - 22050935
Alignment:
Q  506 tcttacaatcagttaccattttcatcttaggaacaccaaacttcttcatctccttcatttaacatatgatcttcatctca 585  Q
    ||||||||| ||||| |||||| ||||||  ||||  ||  |||||||||||||||||| ||||| ||||||||||||||    
T  22050856 tcttacaattagttatcatttttatcttaaaaacaataagtttcttcatctccttcattcaacatgtgatcttcatctca 22050935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 448 - 499
Target Start/End: Original strand, 25062497 - 25062548
Alignment:
Q  448 tacaatcagttaccattttcattttaagaatatcaaacttcttcatcttctt 499  Q
    |||||||| ||||| ||||||| | |||||||||||||||||||||||||||    
T  25062497 tacaatcaattaccgttttcatctcaagaatatcaaacttcttcatcttctt 25062548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 523 - 584
Target Start/End: Original strand, 25062340 - 25062401
Alignment:
Q  523 attttcatcttaggaacaccaaacttcttcatctccttcatttaacatatgatcttcatctc 584  Q
    ||||| |||||  ||||| ||||||||||||||| ||||||| ||||| |||||||||||||    
T  25062340 atttttatcttcagaacatcaaacttcttcatctgcttcattaaacatgtgatcttcatctc 25062401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 522 - 570
Target Start/End: Complemental strand, 20512882 - 20512834
Alignment:
Q  522 cattttcatcttaggaacaccaaacttcttcatctccttcatttaacat 570  Q
    |||||||||||||  |||| ||||||||||||||| |||||||||||||    
T  20512882 cattttcatcttataaacatcaaacttcttcatcttcttcatttaacat 20512834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 537 - 577
Target Start/End: Original strand, 22050732 - 22050772
Alignment:
Q  537 aacaccaaacttcttcatctccttcatttaacatatgatct 577  Q
    |||| ||||||||||||| ||||||||||||||| ||||||    
T  22050732 aacatcaaacttcttcatttccttcatttaacatgtgatct 22050772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0564 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0564
Description:

Target: scaffold0564; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 366 - 499
Target Start/End: Complemental strand, 5586 - 5452
Alignment:
Q  366 agttttttctacattatcccttgaataattgagggtaatataccc-tatcagagaacaattatattttcttcatctttatttctacaatcagttaccatt 464  Q
    |||||||||||||||| | ||| |  |||||| |||||| ||||| ||||| | || ||| |  ||||||||||||||||   || |||||| ||| |||    
T  5586 agttttttctacattacctcttaacgaattgaaggtaatttacccatatcaaataaaaataactttttcttcatctttatccttaaaatcaggtacaatt 5487  T
Q  465 ttcattttaagaatatcaaacttcttcatcttctt 499  Q
    ||||| | || || |||||||||||||||||||||    
T  5486 ttcatctcaaaaagatcaaacttcttcatcttctt 5452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0047 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: scaffold0047
Description:

Target: scaffold0047; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 506 - 575
Target Start/End: Complemental strand, 62798 - 62729
Alignment:
Q  506 tcttacaatcagttaccattttcatcttaggaacaccaaacttcttcatctccttcatttaacatatgat 575  Q
    ||||| ||||||||| || ||||||||||  |||| |||||||||| ||||||||||| ||| |||||||    
T  62798 tcttagaatcagttatcaatttcatcttaaaaacatcaaacttctttatctccttcatataagatatgat 62729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1743 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold1743
Description:

Target: scaffold1743; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 428 - 495
Target Start/End: Original strand, 771 - 837
Alignment:
Q  428 attttcttcatctttatttctacaatcagttaccattttcattttaagaatatcaaacttcttcatct 495  Q
    ||||||||||| ||||||| |||| ||| ||| ||||||| ||| ||| |||||||||||||||||||    
T  771 attttcttcatttttatttttaca-tcatttatcattttcctttcaagtatatcaaacttcttcatct 837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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