View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11479_low_3 (Length: 467)

Name: NF11479_low_3
Description: NF11479
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11479_low_3
NF11479_low_3
[»] chr1 (16 HSPs)
chr1 (134-388)||(39372964-39373218)
chr1 (11-85)||(39372839-39372915)
chr1 (390-448)||(24875029-24875087)
chr1 (390-448)||(47469027-47469085)
chr1 (409-448)||(39373314-39373353)
chr1 (390-441)||(7491826-7491877)
chr1 (390-441)||(17058769-17058820)
chr1 (401-448)||(34562752-34562799)
chr1 (389-448)||(48368520-48368578)
chr1 (390-448)||(19564107-19564165)
chr1 (390-448)||(50119030-50119088)
chr1 (391-440)||(23991219-23991268)
chr1 (392-441)||(45416134-45416183)
chr1 (389-441)||(31124591-31124643)
chr1 (391-439)||(39670784-39670832)
chr1 (390-441)||(48897070-48897122)
[»] chr8 (6 HSPs)
chr8 (390-446)||(15856460-15856516)
chr8 (390-448)||(25812163-25812221)
chr8 (251-297)||(13458440-13458485)
chr8 (390-448)||(22274565-22274623)
chr8 (390-440)||(43847001-43847051)
chr8 (402-448)||(44088922-44088968)
[»] chr4 (10 HSPs)
chr4 (390-448)||(31852407-31852465)
chr4 (389-448)||(51890855-51890914)
chr4 (390-448)||(49264584-49264642)
chr4 (390-447)||(44040418-44040475)
chr4 (390-448)||(8965152-8965211)
chr4 (394-448)||(38848078-38848132)
chr4 (390-448)||(43905768-43905826)
chr4 (389-441)||(12625894-12625946)
chr4 (389-448)||(19963840-19963900)
chr4 (395-447)||(42002365-42002417)
[»] chr2 (5 HSPs)
chr2 (390-448)||(20919668-20919726)
chr2 (394-448)||(44920072-44920126)
chr2 (394-447)||(27497486-27497539)
chr2 (390-448)||(5613012-5613071)
chr2 (388-448)||(27463656-27463715)
[»] chr7 (8 HSPs)
chr7 (389-448)||(45284772-45284831)
chr7 (389-441)||(41331032-41331084)
chr7 (390-448)||(1563692-1563751)
chr7 (387-446)||(41854057-41854116)
chr7 (390-448)||(27424897-27424955)
chr7 (402-448)||(36932031-36932077)
chr7 (389-417)||(11745277-11745305)
chr7 (390-434)||(47542931-47542975)
[»] chr3 (8 HSPs)
chr3 (389-448)||(24303448-24303507)
chr3 (390-448)||(54408504-54408562)
chr3 (389-448)||(44764778-44764837)
chr3 (390-448)||(5173964-5174022)
chr3 (390-448)||(49443377-49443435)
chr3 (390-448)||(54769784-54769842)
chr3 (390-446)||(7253474-7253530)
chr3 (389-448)||(32374897-32374957)
[»] chr6 (5 HSPs)
chr6 (390-448)||(216264-216323)
chr6 (390-448)||(29646502-29646560)
chr6 (390-447)||(8443598-8443655)
chr6 (390-447)||(8452402-8452459)
chr6 (396-448)||(3298927-3298979)
[»] scaffold0276 (1 HSPs)
scaffold0276 (389-446)||(1320-1378)
[»] chr5 (7 HSPs)
chr5 (390-448)||(4068040-4068098)
chr5 (390-448)||(5908272-5908330)
chr5 (402-448)||(20145530-20145576)
chr5 (394-448)||(24477883-24477937)
chr5 (394-448)||(28822714-28822768)
chr5 (390-447)||(17064812-17064869)
chr5 (389-421)||(29045955-29045987)
[»] scaffold0464 (1 HSPs)
scaffold0464 (390-434)||(5636-5681)


Alignment Details
Target: chr1 (Bit Score: 247; Significance: 1e-137; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 134 - 388
Target Start/End: Original strand, 39372964 - 39373218
Alignment:
Q  134 ccgaattgactggcatcaattaatatcattggtttaattaagacaataggtttgagatttagggaggtttctttggcacgactcccttggactgaccatg 233  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39372964 ccgaattgactggcatcaattaatatcattggtttaattaagacaataggtttgagatttagggaggtttctttggcacgactcccttggactgaccatg 39373063  T
Q  234 aattgcaaagtagtgaatttttattgaatgttattgtaaaactaatttacattgatagtgcatacctttttaactcgtataatttctgtctttaaaaaga 333  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  39373064 aattgcaaagtagtgaatttttattgaatgttattgtaaaactaattcacattgatagtgcatacctttttaactcgtataatttctgtctttaaaaaaa 39373163  T
Q  334 agtttaatgataaccgagtactctaaatattatgaaggttatctcacacgaaatg 388  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39373164 agtttaatgataaccgagtactctaaatattatgaaggttatctcacacgaaatg 39373218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 11 - 85
Target Start/End: Original strand, 39372839 - 39372915
Alignment:
Q  11 cagagagaattgagatataataccaaggctaaagtatactttttat--tctctataatttacaaaatgtttgttatg 85  Q
    ||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||    
T  39372839 cagagagaattgagatataataccaaggctaaagtatactttttattctctctataatttacaaaatgtttgttatg 39372915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 390 - 448
Target Start/End: Complemental strand, 24875087 - 24875029
Alignment:
Q  390 tagcctagtggttagagctcacataattaaatacagagaagtggggtgtccgaggttcg 448  Q
    ||||||||||| | ||||||||| |||||||||  ||||||||||||||||||||||||    
T  24875087 tagcctagtggctggagctcacacaattaaatatggagaagtggggtgtccgaggttcg 24875029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 390 - 448
Target Start/End: Original strand, 47469027 - 47469085
Alignment:
Q  390 tagcctagtggttagagctcacataattaaatacagagaagtggggtgtccgaggttcg 448  Q
    ||||||||||||||||||||||| ||||||||   ||||||||||||||||| ||||||    
T  47469027 tagcctagtggttagagctcacacaattaaatgtggagaagtggggtgtccggggttcg 47469085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 409 - 448
Target Start/End: Original strand, 39373314 - 39373353
Alignment:
Q  409 cacataattaaatacagagaagtggggtgtccgaggttcg 448  Q
    ||||||||||||| ||||||||||||||||||||||||||    
T  39373314 cacataattaaatgcagagaagtggggtgtccgaggttcg 39373353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 390 - 441
Target Start/End: Complemental strand, 7491877 - 7491826
Alignment:
Q  390 tagcctagtggttagagctcacataattaaatacagagaagtggggtgtccg 441  Q
    ||||||||||| ||||||||||| ||||||||   |||||||||||||||||    
T  7491877 tagcctagtggctagagctcacacaattaaatgtggagaagtggggtgtccg 7491826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 390 - 441
Target Start/End: Complemental strand, 17058820 - 17058769
Alignment:
Q  390 tagcctagtggttagagctcacataattaaatacagagaagtggggtgtccg 441  Q
    ||||||||||||||||||||||| |||||| |   |||||||||||||||||    
T  17058820 tagcctagtggttagagctcacacaattaattgtggagaagtggggtgtccg 17058769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 401 - 448
Target Start/End: Original strand, 34562752 - 34562799
Alignment:
Q  401 ttagagctcacataattaaatacagagaagtggggtgtccgaggttcg 448  Q
    |||||||||||| |||||||||  ||||||||||||||||| ||||||    
T  34562752 ttagagctcacacaattaaatatggagaagtggggtgtccggggttcg 34562799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 389 - 448
Target Start/End: Complemental strand, 48368578 - 48368520
Alignment:
Q  389 atagcctagtggttagagctcacataattaaatacagagaagtggggtgtccgaggttcg 448  Q
    |||||||||||||||||| ||||| |||||| |   ||||||||||||||||||||||||    
T  48368578 atagcctagtggttagagttcacacaattaa-tgtggagaagtggggtgtccgaggttcg 48368520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 390 - 448
Target Start/End: Original strand, 19564107 - 19564165
Alignment:
Q  390 tagcctagtggttagagctcacataattaaatacagagaagtggggtgtccgaggttcg 448  Q
    ||||||| ||| ||||| ||||| ||||||||   ||||||||||||||||||||||||    
T  19564107 tagcctaatggctagagttcacacaattaaatgtggagaagtggggtgtccgaggttcg 19564165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 390 - 448
Target Start/End: Complemental strand, 50119088 - 50119030
Alignment:
Q  390 tagcctagtggttagagctcacataattaaatacagagaagtggggtgtccgaggttcg 448  Q
    ||||| ||||| ||||||||||| ||||||||   ||||||||||||||||| ||||||    
T  50119088 tagcccagtggctagagctcacacaattaaatgtggagaagtggggtgtccggggttcg 50119030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 391 - 440
Target Start/End: Original strand, 23991219 - 23991268
Alignment:
Q  391 agcctagtggttagagctcacataattaaatacagagaagtggggtgtcc 440  Q
    |||||||||| ||||||||||| ||||||||   ||||||||||||||||    
T  23991219 agcctagtggctagagctcacacaattaaatgtggagaagtggggtgtcc 23991268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 392 - 441
Target Start/End: Original strand, 45416134 - 45416183
Alignment:
Q  392 gcctagtggttagagctcacataattaaatacagagaagtggggtgtccg 441  Q
    ||||||||||||||| ||||| ||||||||   |||||||||||||||||    
T  45416134 gcctagtggttagagttcacacaattaaatgtggagaagtggggtgtccg 45416183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 389 - 441
Target Start/End: Original strand, 31124591 - 31124643
Alignment:
Q  389 atagcctagtggttagagctcacataattaaatacagagaagtggggtgtccg 441  Q
    |||||||||||| ||||||||||| ||||||||   |||||||||||| ||||    
T  31124591 atagcctagtggctagagctcacacaattaaatgtggagaagtggggtatccg 31124643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 391 - 439
Target Start/End: Original strand, 39670784 - 39670832
Alignment:
Q  391 agcctagtggttagagctcacataattaaatacagagaagtggggtgtc 439  Q
    |||||||||||||||||||||| ||||||||   |||||||||| ||||    
T  39670784 agcctagtggttagagctcacacaattaaatgtggagaagtgggatgtc 39670832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 390 - 441
Target Start/End: Original strand, 48897070 - 48897122
Alignment:
Q  390 tagcctagtggttagagctcacataattaaa-tacagagaagtggggtgtccg 441  Q
    ||||||||||||||||||||||| ||||||| ||  ||||||||| |||||||    
T  48897070 tagcctagtggttagagctcacacaattaaattatggagaagtggagtgtccg 48897122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 390 - 446
Target Start/End: Original strand, 15856460 - 15856516
Alignment:
Q  390 tagcctagtggttagagctcacataattaaatacagagaagtggggtgtccgaggtt 446  Q
    ||||||||||||||||||||||| ||||||||   ||||||||||||||||||||||    
T  15856460 tagcctagtggttagagctcacacaattaaatgtggagaagtggggtgtccgaggtt 15856516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 390 - 448
Target Start/End: Original strand, 25812163 - 25812221
Alignment:
Q  390 tagcctagtggttagagctcacataattaaatacagagaagtggggtgtccgaggttcg 448  Q
    ||||||||||||||||||||||| ||||||||   ||||||||||||||| | ||||||    
T  25812163 tagcctagtggttagagctcacacaattaaatgttgagaagtggggtgtctggggttcg 25812221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 251 - 297
Target Start/End: Complemental strand, 13458485 - 13458440
Alignment:
Q  251 tttttattgaatgttattgtaaaactaatttacattgatagtgcata 297  Q
    |||||||||| ||||| |||||||||| |||||||||||||||||||    
T  13458485 tttttattga-tgttagtgtaaaactattttacattgatagtgcata 13458440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 390 - 448
Target Start/End: Original strand, 22274565 - 22274623
Alignment:
Q  390 tagcctagtggttagagctcacataattaaatacagagaagtggggtgtccgaggttcg 448  Q
    ||||||||||| ||||||||||| |||||| |   ||||||||||||||||| ||||||    
T  22274565 tagcctagtggctagagctcacacaattaattgtggagaagtggggtgtccggggttcg 22274623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 390 - 440
Target Start/End: Complemental strand, 43847051 - 43847001
Alignment:
Q  390 tagcctagtggttagagctcacataattaaatacagagaagtggggtgtcc 440  Q
    ||||||||||| ||||||||||| ||||||||   ||||||||||||||||    
T  43847051 tagcctagtggctagagctcacacaattaaatgtggagaagtggggtgtcc 43847001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 402 - 448
Target Start/End: Original strand, 44088922 - 44088968
Alignment:
Q  402 tagagctcacataattaaatacagagaagtggggtgtccgaggttcg 448  Q
    ||||||||||| |||||||||  |||||||||||||||||| |||||    
T  44088922 tagagctcacacaattaaatatggagaagtggggtgtccgaagttcg 44088968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 390 - 448
Target Start/End: Complemental strand, 31852465 - 31852407
Alignment:
Q  390 tagcctagtggttagagctcacataattaaatacagagaagtggggtgtccgaggttcg 448  Q
    ||||||||||| ||||||||||| |||||||||  ||||||||||||||||| ||||||    
T  31852465 tagcctagtggctagagctcacacaattaaatatggagaagtggggtgtccggggttcg 31852407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 389 - 448
Target Start/End: Complemental strand, 51890914 - 51890855
Alignment:
Q  389 atagcctagtggttagagctcacataattaaatacagagaagtggggtgtccgaggttcg 448  Q
    |||||||||||| ||||||||||| ||||||||   ||||||||||||||||| ||||||    
T  51890914 atagcctagtggctagagctcacacaattaaatgtggagaagtggggtgtccggggttcg 51890855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 390 - 448
Target Start/End: Complemental strand, 49264642 - 49264584
Alignment:
Q  390 tagcctagtggttagagctcacataattaaatacagagaagtggggtgtccgaggttcg 448  Q
    ||||||||||| ||||||||||| ||||||||   ||||||||||||||||| ||||||    
T  49264642 tagcctagtggctagagctcacacaattaaatgtggagaagtggggtgtccggggttcg 49264584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 390 - 447
Target Start/End: Complemental strand, 44040475 - 44040418
Alignment:
Q  390 tagcctagtggttagagctcacataattaaatacagagaagtggggtgtccgaggttc 447  Q
    ||||||||||| ||||||||||| ||||| |||  ||||||||||||||||| |||||    
T  44040475 tagcctagtggatagagctcacacaattatatatggagaagtggggtgtccggggttc 44040418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 390 - 448
Target Start/End: Complemental strand, 8965211 - 8965152
Alignment:
Q  390 tagcctagtggttagagctcacataa-ttaaatacagagaagtggggtgtccgaggttcg 448  Q
    ||||||||||||||||||||||| || |||| |  |||||||||||||||||| ||||||    
T  8965211 tagcctagtggttagagctcacacaatttaattgtagagaagtggggtgtccggggttcg 8965152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 394 - 448
Target Start/End: Original strand, 38848078 - 38848132
Alignment:
Q  394 ctagtggttagagctcacataattaaatacagagaagtggggtgtccgaggttcg 448  Q
    ||||||||||||||||||| | ||||||   ||||||||||||||||| ||||||    
T  38848078 ctagtggttagagctcacacatttaaatgtggagaagtggggtgtccggggttcg 38848132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 390 - 448
Target Start/End: Complemental strand, 43905826 - 43905768
Alignment:
Q  390 tagcctagtggttagagctcacataattaaatacagagaagtggggtgtccgaggttcg 448  Q
    ||||||||||| ||||||||||| |||||||    ||||||||||||||||| ||||||    
T  43905826 tagcctagtggctagagctcacacaattaaacgtggagaagtggggtgtccggggttcg 43905768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 389 - 441
Target Start/End: Complemental strand, 12625946 - 12625894
Alignment:
Q  389 atagcctagtggttagagctcacataattaaatacagagaagtggggtgtccg 441  Q
    |||||||||||| ||||| ||||| ||||||||   |||||||||||||||||    
T  12625946 atagcctagtggctagagttcacacaattaaatgtggagaagtggggtgtccg 12625894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 389 - 448
Target Start/End: Complemental strand, 19963900 - 19963840
Alignment:
Q  389 atagcctagtggttagagctcacataattaaa-tacagagaagtggggtgtccgaggttcg 448  Q
    |||||||| ||| ||||||||||| ||||||| | ||||||||||  ||||||||||||||    
T  19963900 atagcctaatggctagagctcacacaattaaattgcagagaagtgaagtgtccgaggttcg 19963840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 395 - 447
Target Start/End: Complemental strand, 42002417 - 42002365
Alignment:
Q  395 tagtggttagagctcacataattaaatacagagaagtggggtgtccgaggttc 447  Q
    |||||| ||||||||||| ||||||||   ||||||||||||||| |||||||    
T  42002417 tagtggctagagctcacacaattaaatgtggagaagtggggtgtctgaggttc 42002365  T

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Target: chr2 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 390 - 448
Target Start/End: Complemental strand, 20919726 - 20919668
Alignment:
Q  390 tagcctagtggttagagctcacataattaaatacagagaagtggggtgtccgaggttcg 448  Q
    ||||||||||| ||||||||||||||||||||   ||||||||||||||||| ||||||    
T  20919726 tagcctagtggctagagctcacataattaaatgtggagaagtggggtgtccggggttcg 20919668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 394 - 448
Target Start/End: Complemental strand, 44920126 - 44920072
Alignment:
Q  394 ctagtggttagagctcacataattaaatacagagaagtggggtgtccgaggttcg 448  Q
    ||||||||||||||| |||||||||||||   ||||||||||||||||| |||||    
T  44920126 ctagtggttagagctaacataattaaatatgtagaagtggggtgtccgatgttcg 44920072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 394 - 447
Target Start/End: Original strand, 27497486 - 27497539
Alignment:
Q  394 ctagtggttagagctcacataattaaatacagagaagtggggtgtccgaggttc 447  Q
    ||||||||||||||||||||||||||||   ||||||||||||||  |||||||    
T  27497486 ctagtggttagagctcacataattaaatgtggagaagtggggtgtttgaggttc 27497539  T

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Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 390 - 448
Target Start/End: Complemental strand, 5613071 - 5613012
Alignment:
Q  390 tagcctagtggttagagctcacataattaaa-tacagagaagtggggtgtccgaggttcg 448  Q
    ||||||||||||||||||||||| ||||||| |   ||||||||||||||||| ||||||    
T  5613071 tagcctagtggttagagctcacacaattaaattgtggagaagtggggtgtccggggttcg 5613012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 388 - 448
Target Start/End: Original strand, 27463656 - 27463715
Alignment:
Q  388 gatagcctagtggttagagctcacataattaaatacagagaagtggggtgtccgaggttcg 448  Q
    |||||||||||||||||| ||||||| |||||||   ||||| ||||||||||| ||||||    
T  27463656 gatagcctagtggttagaactcacat-attaaatgtggagaaatggggtgtccggggttcg 27463715  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000004; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 389 - 448
Target Start/End: Original strand, 45284772 - 45284831
Alignment:
Q  389 atagcctagtggttagagctcacataattaaatacagagaagtggggtgtccgaggttcg 448  Q
    |||| ||||||||||||||||||| ||||||||   ||||||||||||||||| ||||||    
T  45284772 atagtctagtggttagagctcacacaattaaatgttgagaagtggggtgtccggggttcg 45284831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 389 - 441
Target Start/End: Original strand, 41331032 - 41331084
Alignment:
Q  389 atagcctagtggttagagctcacataattaaatacagagaagtggggtgtccg 441  Q
    ||||||||||||||| |||||||| ||||||||   |||||||||||||||||    
T  41331032 atagcctagtggttaaagctcacacaattaaatgtggagaagtggggtgtccg 41331084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 390 - 448
Target Start/End: Original strand, 1563692 - 1563751
Alignment:
Q  390 tagcctagtggttagagctcacataa-ttaaatacagagaagtggggtgtccgaggttcg 448  Q
    ||||||||||||||||||||||| || |||| |  |||||||||||||||||| ||||||    
T  1563692 tagcctagtggttagagctcacacaatttaattgtagagaagtggggtgtccggggttcg 1563751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 387 - 446
Target Start/End: Complemental strand, 41854116 - 41854057
Alignment:
Q  387 tgatagcctagtggttagagctcacataattaaatacagagaagtggggtgtccgaggtt 446  Q
    |||||||| ||||| ||||||||||||||||||||   |||||| |||||||||| ||||    
T  41854116 tgatagcccagtggctagagctcacataattaaatgtggagaagcggggtgtccggggtt 41854057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 390 - 448
Target Start/End: Complemental strand, 27424955 - 27424897
Alignment:
Q  390 tagcctagtggttagagctcacataattaaatacagagaagtggggtgtccgaggttcg 448  Q
    ||||||||||| ||||||||||| ||||||||   ||||||||| || |||||||||||    
T  27424955 tagcctagtggctagagctcacacaattaaatgtggagaagtggagtatccgaggttcg 27424897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 402 - 448
Target Start/End: Complemental strand, 36932077 - 36932031
Alignment:
Q  402 tagagctcacataattaaatacagagaagtggggtgtccgaggttcg 448  Q
    ||||||||||| ||||||||  |||||||||||||||||| ||||||    
T  36932077 tagagctcacacaattaaatgtagagaagtggggtgtccggggttcg 36932031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 389 - 417
Target Start/End: Complemental strand, 11745305 - 11745277
Alignment:
Q  389 atagcctagtggttagagctcacataatt 417  Q
    |||||||||||||||||||||||||||||    
T  11745305 atagcctagtggttagagctcacataatt 11745277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 390 - 434
Target Start/End: Original strand, 47542931 - 47542975
Alignment:
Q  390 tagcctagtggttagagctcacataattaaatacagagaagtggg 434  Q
    ||||||||||| ||||||||||| |||||||||  ||||||||||    
T  47542931 tagcctagtggctagagctcacaaaattaaatatggagaagtggg 47542975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 36; Significance: 0.00000000004; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 389 - 448
Target Start/End: Complemental strand, 24303507 - 24303448
Alignment:
Q  389 atagcctagtggttagagctcacataattaaatacagagaagtggggtgtccgaggttcg 448  Q
    |||||||||||| ||||||||||| ||||||||   ||||||||||||||||| ||||||    
T  24303507 atagcctagtggctagagctcacacaattaaatgtggagaagtggggtgtccggggttcg 24303448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 390 - 448
Target Start/End: Original strand, 54408504 - 54408562
Alignment:
Q  390 tagcctagtggttagagctcacataattaaatacagagaagtggggtgtccgaggttcg 448  Q
    ||||||||||||||||||||||||||||||||   || || ||||||||||| ||||||    
T  54408504 tagcctagtggttagagctcacataattaaatgtggaaaaatggggtgtccggggttcg 54408562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 389 - 448
Target Start/End: Complemental strand, 44764837 - 44764778
Alignment:
Q  389 atagcctagtggttagagctcacataattaaatacagagaagtggggtgtccgaggttcg 448  Q
    |||||||||||| ||||||||||| ||||||||   ||||||||| ||||||| ||||||    
T  44764837 atagcctagtggctagagctcacacaattaaatgtggagaagtggagtgtccggggttcg 44764778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 390 - 448
Target Start/End: Original strand, 5173964 - 5174022
Alignment:
Q  390 tagcctagtggttagagctcacataattaaatacagagaagtggggtgtccgaggttcg 448  Q
    ||||||||||| ||||||||||| ||||||||   |||||||||||||| || ||||||    
T  5173964 tagcctagtggctagagctcacacaattaaatgtggagaagtggggtgttcggggttcg 5174022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 390 - 448
Target Start/End: Original strand, 49443377 - 49443435
Alignment:
Q  390 tagcctagtggttagagctcacataattaaatacagagaagtggggtgtccgaggttcg 448  Q
    ||||||||||| ||||||||||| | ||||||   ||||||||||||||||| ||||||    
T  49443377 tagcctagtggctagagctcacacatttaaatgtggagaagtggggtgtccggggttcg 49443435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 390 - 448
Target Start/End: Original strand, 54769784 - 54769842
Alignment:
Q  390 tagcctagtggttagagctcacataattaaatacagagaagtggggtgtccgaggttcg 448  Q
    ||||||||| | ||||||||||| ||||||||   ||||||||||||||||| ||||||    
T  54769784 tagcctagttgctagagctcacacaattaaatgtggagaagtggggtgtccgtggttcg 54769842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 390 - 446
Target Start/End: Original strand, 7253474 - 7253530
Alignment:
Q  390 tagcctagtggttagagctcacataattaaatacagagaagtggggtgtccgaggtt 446  Q
    ||||||||||| ||  ||||||| |||||||| | ||||||||||||||||| ||||    
T  7253474 tagcctagtggctacggctcacacaattaaatgcggagaagtggggtgtccggggtt 7253530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 389 - 448
Target Start/End: Complemental strand, 32374957 - 32374897
Alignment:
Q  389 atagcctagtggttagagctcacataattaaat-acagagaagtggggtgtccgaggttcg 448  Q
    |||||||||||  ||||||||||| |||| ||| |||| ||||||| ||||||||||||||    
T  32374957 atagcctagtgactagagctcacacaatttaattacagggaagtggagtgtccgaggttcg 32374897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 390 - 448
Target Start/End: Complemental strand, 216323 - 216264
Alignment:
Q  390 tagcctagtggttagagctcacataattaaatacag-agaagtggggtgtccgaggttcg 448  Q
    ||||||||||||||||||||||| |||| |||   | |||||||||||||||||||||||    
T  216323 tagcctagtggttagagctcacacaatttaattgtggagaagtggggtgtccgaggttcg 216264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 390 - 448
Target Start/End: Original strand, 29646502 - 29646560
Alignment:
Q  390 tagcctagtggttagagctcacataattaaatacagagaagtggggtgtccgaggttcg 448  Q
    ||||||||||| | ||||||||| ||||||||   ||||||||||||||||| ||||||    
T  29646502 tagcctagtggctggagctcacacaattaaatgtggagaagtggggtgtccggggttcg 29646560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 390 - 447
Target Start/End: Complemental strand, 8443655 - 8443598
Alignment:
Q  390 tagcctagtggttagagctcacataattaaatacagagaagtggggtgtccgaggttc 447  Q
    ||||||||||  ||||||||||| ||||||||   ||||||||||||||||| |||||    
T  8443655 tagcctagtgactagagctcacagaattaaatgtggagaagtggggtgtccggggttc 8443598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 390 - 447
Target Start/End: Complemental strand, 8452459 - 8452402
Alignment:
Q  390 tagcctagtggttagagctcacataattaaatacagagaagtggggtgtccgaggttc 447  Q
    ||||||||||  ||||||||||| ||||||||   ||||||||||||||||| |||||    
T  8452459 tagcctagtgactagagctcacagaattaaatgtggagaagtggggtgtccggggttc 8452402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 396 - 448
Target Start/End: Original strand, 3298927 - 3298979
Alignment:
Q  396 agtggttagagctcacataattaaatacagagaagtggggtgtccgaggttcg 448  Q
    ||||||||||||||||| | |||||||  |||||||||| ||| |||||||||    
T  3298927 agtggttagagctcacacatttaaatatggagaagtgggatgttcgaggttcg 3298979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0276 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0276
Description:

Target: scaffold0276; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 389 - 446
Target Start/End: Complemental strand, 1378 - 1320
Alignment:
Q  389 atagcctagtggttagagctcacataattaaa-tacagagaagtggggtgtccgaggtt 446  Q
    |||||||||||| ||||||||||||||||||| |   ||||||||| ||||||||||||    
T  1378 atagcctagtggctagagctcacataattaaattgtggagaagtggagtgtccgaggtt 1320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 390 - 448
Target Start/End: Complemental strand, 4068098 - 4068040
Alignment:
Q  390 tagcctagtggttagagctcacataattaaatacagagaagtggggtgtccgaggttcg 448  Q
    |||| |||||||| ||||||||| ||||||||   ||||||||||||||||| ||||||    
T  4068098 tagcgtagtggttggagctcacacaattaaatgtggagaagtggggtgtccggggttcg 4068040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 390 - 448
Target Start/End: Original strand, 5908272 - 5908330
Alignment:
Q  390 tagcctagtggttagagctcacataattaaatacagagaagtggggtgtccgaggttcg 448  Q
    ||||||||||| ||||||||||| |||||||||  |||||| ||  |||||||||||||    
T  5908272 tagcctagtggctagagctcacacaattaaatatggagaagcggaatgtccgaggttcg 5908330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 402 - 448
Target Start/End: Original strand, 20145530 - 20145576
Alignment:
Q  402 tagagctcacataattaaatacagagaagtggggtgtccgaggttcg 448  Q
    ||||||||||| ||||||||   ||||||||||||||||||||||||    
T  20145530 tagagctcacacaattaaatgtggagaagtggggtgtccgaggttcg 20145576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 394 - 448
Target Start/End: Complemental strand, 24477937 - 24477883
Alignment:
Q  394 ctagtggttagagctcacataattaaatacagagaagtggggtgtccgaggttcg 448  Q
    ||||||| | ||||||||| ||||||||   ||||||||||||||||||||||||    
T  24477937 ctagtggctggagctcacacaattaaatgtggagaagtggggtgtccgaggttcg 24477883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 394 - 448
Target Start/End: Original strand, 28822714 - 28822768
Alignment:
Q  394 ctagtggttagagctcacataattaaatacagagaagtggggtgtccgaggttcg 448  Q
    ||||||||| |||||||||| ||||||||  |||||||||||||| || ||||||    
T  28822714 ctagtggttggagctcacattattaaatatggagaagtggggtgttcggggttcg 28822768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 390 - 447
Target Start/End: Original strand, 17064812 - 17064869
Alignment:
Q  390 tagcctagtggttagagctcacataattaaatacagagaagtggggtgtccgaggttc 447  Q
    ||||||||||| |||| |||||| ||||||||   ||||||||||||||||| |||||    
T  17064812 tagcctagtggctagaactcacacaattaaatgtggagaagtggggtgtccggggttc 17064869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 389 - 421
Target Start/End: Complemental strand, 29045987 - 29045955
Alignment:
Q  389 atagcctagtggttagagctcacataattaaat 421  Q
    |||||||||||||||||||||||| ||||||||    
T  29045987 atagcctagtggttagagctcacacaattaaat 29045955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0464 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0464
Description:

Target: scaffold0464; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 390 - 434
Target Start/End: Original strand, 5636 - 5681
Alignment:
Q  390 tagcctagtggttagagctcacata-attaaatacagagaagtggg 434  Q
    ||||||||||||||||||||||| |  |||||||||||||||||||    
T  5636 tagcctagtggttagagctcacacattttaaatacagagaagtggg 5681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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