View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11479_low_4 (Length: 437)
Name: NF11479_low_4
Description: NF11479
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11479_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 418; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 418; E-Value: 0
Query Start/End: Original strand, 2 - 436
Target Start/End: Complemental strand, 43417154 - 43416718
Alignment:
| Q |
2 |
cattgtgtactatgggtgcttctgtattcaggttggctatgcatactgttgcactgcatgtagaattgtcgtggcacttacagcctaggacctgagtgta |
101 |
Q |
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| T |
43417154 |
cattgtgtactatgggtgcttctgtattcaggttggctatgcatactgttgcactgcatgtagaattgtcatggcacttacagcctaggacctgagtgta |
43417055 |
T |
|
| Q |
102 |
gcatttatatttgaccaatatgtgacatgtattatgggatattatttaagttaatcatgtatgccaacaaattaattagtcagcaacaagtcaaaatata |
201 |
Q |
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| T |
43417054 |
gcatttatatttgaccaatatgtgacatgtattatgggatattatttaagttaatcatgtatgccaacaaattaattagtcagcaacaagtcaaaatata |
43416955 |
T |
|
| Q |
202 |
aatggttcacgaagtttatttgaaaaccttattattattgcctaaactaaaggaatggtaagagtacaatttttcgtaggatgaattataactcattatg |
301 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43416954 |
aatggttcacgaagtttatttgaaaaccttattattattgcctaaactaaaggaatggtaagagtacaatttttcgtaggatgaattataactcattatg |
43416855 |
T |
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| Q |
302 |
gtaaattgatttcaacgg--ggggtcttactattggtgtgtgtctacatattgatttgttgacccttttctttttacttggtctggcagtggaatcacac |
399 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43416854 |
gtaaattgatttcaacggggggggtcttactattggtgtgtgtctacatattgatttgttgacccttttctttttacttggtctggcagtggaatcacac |
43416755 |
T |
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| Q |
400 |
ttacaaaattagttggagttctggtcctatgcttctc |
436 |
Q |
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|||||||||||||||||||||||||||| |||||||| |
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| T |
43416754 |
ttacaaaattagttggagttctggtcctttgcttctc |
43416718 |
T |
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