View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11479_low_5 (Length: 364)
Name: NF11479_low_5
Description: NF11479
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11479_low_5 |
 | |
|
| [»] scaffold0294 (1 HSPs) |
| | |
|
Alignment Details
Target: chr4 (Bit Score: 178; Significance: 6e-96; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 178; E-Value: 6e-96
Query Start/End: Original strand, 115 - 363
Target Start/End: Original strand, 11695607 - 11695852
Alignment:
| Q |
115 |
tgacggagtttttggctcaacattaatcatatcaaatacataaacacaaactcaaactcattttcacgaagnnnnnnnngtgaattattgaacaggtttg |
214 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||| || ||||||||||||| ||| ||||||||||||| ||||||| |
|
|
| T |
11695607 |
tgacggagtttttggctcaacatcaatcatatcaaatacataaacacatac--aaactcattttcatgaa-aaaaaaaagtgaattattgaataggtttg |
11695703 |
T |
|
| Q |
215 |
tttgatggcagaatccaacgaagtgttgttagaagctgagttagctgttgttgatggagtcgttgactacagaggacaaactgccgttagatccaaaact |
314 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
11695704 |
tttgatggcagaatccaacgaagtgttgttagaagctcagttagctgttgttgatggagtcgttgactacagaggacaacctgccgttagatccaaaact |
11695803 |
T |
|
| Q |
315 |
ggctattggagatccgcttggtttatcataggtacttaaaaacacacaa |
363 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
11695804 |
ggctattggagatccgcttggtttatcataggtacttacaaacacacaa |
11695852 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 194 - 349
Target Start/End: Original strand, 11675138 - 11675293
Alignment:
| Q |
194 |
gtgaattattgaacaggtttgtttgatggcagaatccaacgaagtgttgttagaagctgagttagctgttgttgatggagtcgttgactacagaggacaa |
293 |
Q |
| |
|
||||||||||||| |||||| ||||||||||||||||||||||||||||||||| || |||||||| |||||||||| |||||||||| || |||||| |
|
|
| T |
11675138 |
gtgaattattgaataggtttcattgatggcagaatccaacgaagtgttgttagaacctcagttagctcttgttgatggcgtcgttgactgcaaaggacag |
11675237 |
T |
|
| Q |
294 |
actgccgttagatccaaaactggctattggagatccgcttggtttatcataggtac |
349 |
Q |
| |
|
|| ||||| ||||||||||| |||||||||||||||||||||||||| ||||| |
|
|
| T |
11675238 |
caggcagttaggtccaaaactggttattggagatccgcttggtttatcattggtac |
11675293 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 194 - 349
Target Start/End: Original strand, 11683417 - 11683572
Alignment:
| Q |
194 |
gtgaattattgaacaggtttgtttgatggcagaatccaacgaagtgttgttagaagctgagttagctgttgttgatggagtcgttgactacagaggacaa |
293 |
Q |
| |
|
||||||||||||| |||||| ||||||||||||||||||||||||||||||||| || |||||||| |||||||||| |||||||||| || |||||| |
|
|
| T |
11683417 |
gtgaattattgaataggtttcattgatggcagaatccaacgaagtgttgttagaacctcagttagctcttgttgatggcgtcgttgactgcaaaggacag |
11683516 |
T |
|
| Q |
294 |
actgccgttagatccaaaactggctattggagatccgcttggtttatcataggtac |
349 |
Q |
| |
|
|| ||||| ||||||||||| |||||||||||||||||||||||||| ||||| |
|
|
| T |
11683517 |
caggcagttaggtccaaaactggttattggagatccgcttggtttatcattggtac |
11683572 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 194 - 348
Target Start/End: Original strand, 11701472 - 11701626
Alignment:
| Q |
194 |
gtgaattattgaacaggtttgtttgatggcagaatccaacgaagtgttgttagaagctgagttagctgttgttgatggagtcgttgactacagaggacaa |
293 |
Q |
| |
|
||||||||||||| |||||| ||||||| ||||||||| |||||||||||||||||| | ||| || |||||||||| | |||||||||| ||||| |
|
|
| T |
11701472 |
gtgaattattgaataggtttcattgatggaagaatccaatgaagtgttgttagaagctcaattatctcttgttgatggcgctgttgactacaatggacag |
11701571 |
T |
|
| Q |
294 |
actgccgttagatccaaaactggctattggagatccgcttggtttatcataggta |
348 |
Q |
| |
|
|||| ||||| | ||| |||| ||||||||||||||||||||||||||||||| |
|
|
| T |
11701572 |
cctgcagttaggtttaaatctggttattggagatccgcttggtttatcataggta |
11701626 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 276 - 349
Target Start/End: Original strand, 11778637 - 11778710
Alignment:
| Q |
276 |
gttgactacagaggacaaactgccgttagatccaaaactggctattggagatccgcttggtttatcataggtac |
349 |
Q |
| |
|
||||| || ||||||||| ||||| | ||||||||| |||| |||||| |||||||||||||||||||||||| |
|
|
| T |
11778637 |
gttgattatagaggacaacctgccatcagatccaaatctggttattggctatccgcttggtttatcataggtac |
11778710 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 303 - 350
Target Start/End: Original strand, 11797235 - 11797282
Alignment:
| Q |
303 |
agatccaaaactggctattggagatccgcttggtttatcataggtact |
350 |
Q |
| |
|
||||||||| |||| |||||| |||||||||||||||||||||||||| |
|
|
| T |
11797235 |
agatccaaatctggttattggcgatccgcttggtttatcataggtact |
11797282 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 15 - 49
Target Start/End: Original strand, 11695510 - 11695544
Alignment:
| Q |
15 |
gacatcattgttcaataaaatatatttctctacct |
49 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
11695510 |
gacatcattgttcaataaaatatatttctctacct |
11695544 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0294 (Bit Score: 98; Significance: 3e-48; HSPs: 1)
Name: scaffold0294
Description:
Target: scaffold0294; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 216 - 349
Target Start/End: Original strand, 15781 - 15914
Alignment:
| Q |
216 |
ttgatggcagaatccaacgaagtgttgttagaagctgagttagctgttgttgatggagtcgttgactacagaggacaaactgccgttagatccaaaactg |
315 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||| |||||||||| |||||| ||| |
|
|
| T |
15781 |
ttgatggcagaatcaaacgaagtgttgttagaagctgaattagctactgttgatggagtcgttgactacagaggacaacctgccgttaggtccaaatctg |
15880 |
T |
|
| Q |
316 |
gctattggagatccgcttggtttatcataggtac |
349 |
Q |
| |
|
| || ||||||||||||||||||||||||||||| |
|
|
| T |
15881 |
gttactggagatccgcttggtttatcataggtac |
15914 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University