View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11479_low_6 (Length: 332)
Name: NF11479_low_6
Description: NF11479
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11479_low_6 |
 | |
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Alignment Details
Target: chr4 (Bit Score: 304; Significance: 1e-171; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 3 - 318
Target Start/End: Complemental strand, 6903616 - 6903301
Alignment:
| Q |
3 |
tggagaatgagattgaagaaacacggcaattacattttcttttacaacgaatggcaagagtttgcaaaatactattcgttaggatatggttgctacctat |
102 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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|
| T |
6903616 |
tggagaatgagattgaagaaacacggcaattacattttcttttacaacgaatggcaagagtttgcaaaatactattcattaggatatggttgctacctat |
6903517 |
T |
|
| Q |
103 |
ctttcaaatacgaaggaaattcaaagtttagtgttattatatttgatgtaacttcggttgagatttgctattcactcaaaactccgagtactaatggaga |
202 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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|
| T |
6903516 |
ctttcaaatacgaaggaaattcaaagtttagtgttattatatttgatgtaacttcggttgagatttgctatccactcaaaactccgagtactaatggaga |
6903417 |
T |
|
| Q |
203 |
aacaaatacacaatgtcctactcctagaaaaagttccagggttgaaacaagtggcagtcaagtgataaagctcaaaatcaggtttggacatgcttttgaa |
302 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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|
| T |
6903416 |
aacaaatacacaatgtcctactcctagaaaaagttccagggttgaaacaagtggcagtcaagtgataaagctcaaaatcaggtttggacatgcttttaaa |
6903317 |
T |
|
| Q |
303 |
aatgcagaggttgctg |
318 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
6903316 |
aatgcagaggttgctg |
6903301 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 284; Significance: 1e-159; HSPs: 9)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 3 - 318
Target Start/End: Original strand, 204877 - 205192
Alignment:
| Q |
3 |
tggagaatgagattgaagaaacacggcaattacattttcttttacaacgaatggcaagagtttgcaaaatactattcgttaggatatggttgctacctat |
102 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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|
| T |
204877 |
tggagaatgagattgaagaaacacggcaatgacattttcttttacaacgaatggcaagagtttgcaaaatactattcgttaggatgtggttgctacctat |
204976 |
T |
|
| Q |
103 |
ctttcaaatacgaaggaaattcaaagtttagtgttattatatttgatgtaacttcggttgagatttgctattcactcaaaactccgagtactaatggaga |
202 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
204977 |
ctttcaaatacgaaggaaattcaaagtttagtgttgttatatttgatgtaacttcggttgagatttgctatccactcaaaactccgagtactaatggaga |
205076 |
T |
|
| Q |
203 |
aacaaatacacaatgtcctactcctagaaaaagttccagggttgaaacaagtggcagtcaagtgataaagctcaaaatcaggtttggacatgcttttgaa |
302 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
205077 |
aacaaatacacaatgtcctactcctagaaaaagttcaagggttgaaacaattggcagtcaagtgataaagctcaaaatcaggtttggacatgcttttaaa |
205176 |
T |
|
| Q |
303 |
aatgcagaggttgctg |
318 |
Q |
| |
|
| |||||||||||||| |
|
|
| T |
205177 |
agtgcagaggttgctg |
205192 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 141; E-Value: 7e-74
Query Start/End: Original strand, 3 - 255
Target Start/End: Complemental strand, 197316 - 197064
Alignment:
| Q |
3 |
tggagaatgagattgaagaaacacggcaattacattttcttttacaacgaatggcaagagtttgcaaaatactattcgttaggatatggttgctacctat |
102 |
Q |
| |
|
|||| ||||||||||||||||| ||||||| |||||||||||| |||||||||| ||||||| |||||||||||||| ||||| |||||||||||||||| |
|
|
| T |
197316 |
tggaaaatgagattgaagaaacgcggcaatgacattttcttttccaacgaatgggaagagttcgcaaaatactattcattagggtatggttgctacctat |
197217 |
T |
|
| Q |
103 |
ctttcaaatacgaaggaaattcaaagtttagtgttattatatttgatgtaacttcggttgagatttgctattcactcaaaactccgagtactaatggaga |
202 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||| ||||||| ||||||||||| ||| || | |||||||| ||| ||||||||| |
|
|
| T |
197216 |
ctttcaaatacgaagggaattcaaagtttagtgttattatatttgacgtaacttatgttgagatttgttatccattaaaaactccaagtgttaatggaga |
197117 |
T |
|
| Q |
203 |
aacaaatacacaatgtcctactcctagaaaaagttccagggttgaaacaagtg |
255 |
Q |
| |
|
| |||| ||| ||||| ||| ||||| ||||| |||| |||||||||||||| |
|
|
| T |
197116 |
accaaacacaaaatgtgctagtcctacgaaaaggtccaaggttgaaacaagtg |
197064 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 41 - 249
Target Start/End: Complemental strand, 225035 - 224827
Alignment:
| Q |
41 |
cttttacaacgaatggcaagagtttgcaaaatactattcgttaggatatggttgctacctatctttcaaatacgaaggaaattcaaagtttagtgttatt |
140 |
Q |
| |
|
||||| |||| ||||| || | |||||| |||||||||| ||| |||||||||||| | | ||||||||||| ||||| ||||||||||||||||||||| |
|
|
| T |
225035 |
cttttgcaacaaatggaaacaatttgcagaatactattctttaagatatggttgcttcatgtctttcaaatatgaagggaattcaaagtttagtgttatt |
224936 |
T |
|
| Q |
141 |
atatttgatgtaacttcggttgagatttgctattcactcaaaactccgagtactaatggagaaacaaatacacaatgtcctactcctagaaaaagttcca |
240 |
Q |
| |
|
||||||||||||||||| ||||||||||||||| ||||||||||||| |||||||||||||||||||| ||| | ||||||| |||| ||||| |||| |
|
|
| T |
224935 |
atatttgatgtaacttctgttgagatttgctatccactcaaaactccaagtactaatggagaaacaaacacagagtgtcctagacctacgaaaaggtcca |
224836 |
T |
|
| Q |
241 |
gggttgaaa |
249 |
Q |
| |
|
||||||||| |
|
|
| T |
224835 |
gggttgaaa |
224827 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 46 - 255
Target Start/End: Complemental strand, 210548 - 210339
Alignment:
| Q |
46 |
acaacgaatggcaagagtttgcaaaatactattcgttaggatatggttgctacctatctttcaaatacgaaggaaattcaaagtttagtgttattatatt |
145 |
Q |
| |
|
|||| ||||||||| |||||||| |||||||||| ||| |||| ||||||| ||| ||||||| ||||||||| |||||||| ||||| ||||||||||| |
|
|
| T |
210548 |
acaaggaatggcaacagtttgcagaatactattctttaagatacggttgcttcctgtctttcagatacgaagggaattcaaattttagcgttattatatt |
210449 |
T |
|
| Q |
146 |
tgatgtaacttcggttgagatttgctattcactcaaaactccgagtactaatggagaaacaaatacacaatgtcctactcctagaaaaagttccagggtt |
245 |
Q |
| |
|
||||| |||||| ||||| ||||||||| || | |||||||| ||||||| |||||||||||| || | ||||||| |||| ||||| |||| |||| |
|
|
| T |
210448 |
tgatgcaacttctgttgaaatttgctatccattaaaaactccaagtactagtggagaaacaaacaccgagtgtcctaggcctatgaaaaggtccaaggtt |
210349 |
T |
|
| Q |
246 |
gaaacaagtg |
255 |
Q |
| |
|
|||||||||| |
|
|
| T |
210348 |
gaaacaagtg |
210339 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 16 - 255
Target Start/End: Complemental strand, 217181 - 216942
Alignment:
| Q |
16 |
tgaagaaacacggcaattacattttcttttacaacgaatggcaagagtttgcaaaatactattcgttaggatatggttgctacctatctttcaaatacga |
115 |
Q |
| |
|
|||||||| ||||||| || ||| ||||| |||| |||||||| |||||||| |||||||||| |||| ||||||| || ||| | ||||||||| || |
|
|
| T |
217181 |
tgaagaaatgcggcaatgacgtttacttttgcaacaaatggcaacagtttgcagaatactattctatagggtatggttccttcctgtgtttcaaatatga |
217082 |
T |
|
| Q |
116 |
aggaaattcaaagtttagtgttattatatttgatgtaacttcggttgagatttgctattcactcaaaactccgagtactaatggagaaacaaatacacaa |
215 |
Q |
| |
|
||| |||||||||||||||| |||||||||||| |||||| |||||||||||||| || ||||||||| ||||| |||||||||||||| ||| | |
|
|
| T |
217081 |
aggggattcaaagtttagtgtctttatatttgatgcaacttctattgagatttgctatccattcaaaactcaaagtacaaatggagaaacaaaaacaaag |
216982 |
T |
|
| Q |
216 |
tgtcctactcctagaaaaagttccagggttgaaacaagtg |
255 |
Q |
| |
|
| || || |||||| ||||| |||| |||||||||||||| |
|
|
| T |
216981 |
tttcatagtcctaggaaaaggtccaaggttgaaacaagtg |
216942 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 16 - 255
Target Start/End: Complemental strand, 222126 - 221887
Alignment:
| Q |
16 |
tgaagaaacacggcaattacattttcttttacaacgaatggcaagagtttgcaaaatactattcgttaggatatggttgctacctatctttcaaatacga |
115 |
Q |
| |
|
|||||||| |||||| || ||| ||||| |||| |||||||| |||||||| |||||||||| |||| ||||||| || | | ||||||||| || |
|
|
| T |
222126 |
tgaagaaatgcggcaacgacgtttacttttgcaacaaatggcaacagtttgcagaatactattctatagggtatggttccttcttgcgtttcaaatatga |
222027 |
T |
|
| Q |
116 |
aggaaattcaaagtttagtgttattatatttgatgtaacttcggttgagatttgctattcactcaaaactccgagtactaatggagaaacaaatacacaa |
215 |
Q |
| |
|
||| |||||||||||| |||| ||||||||||||||||||| ||||||||||||||| || ||||||||| |||| ||||||||||||||| ||| | |
|
|
| T |
222026 |
aggggattcaaagtttaatgttgttatatttgatgtaacttctgttgagatttgctatccattcaaaactcaaagtattaatggagaaacaaacacaaag |
221927 |
T |
|
| Q |
216 |
tgtcctactcctagaaaaagttccagggttgaaacaagtg |
255 |
Q |
| |
|
|||| || |||||| ||||| |||| |||||||||||||| |
|
|
| T |
221926 |
tgtcatagtcctaggaaaaggtccaaggttgaaacaagtg |
221887 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 115 - 202
Target Start/End: Complemental strand, 198361 - 198274
Alignment:
| Q |
115 |
aaggaaattcaaagtttagtgttattatatttgatgtaacttcggttgagatttgctattcactcaaaactccgagtactaatggaga |
202 |
Q |
| |
|
|||| ||||||||||||| |||| |||||| |||| |||||| |||||||||| |||||| |||||||||| |||||||||||||| |
|
|
| T |
198361 |
aagggaattcaaagtttaatgttgttatatatgatacaacttctgttgagatttcttattcattcaaaactccaagtactaatggaga |
198274 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 104 - 208
Target Start/End: Complemental strand, 211771 - 211667
Alignment:
| Q |
104 |
tttcaaatacgaaggaaattcaaagtttagtgttattatatttgatgtaacttcggttgagatttgctattcactcaaaactccgagtactaatggagaa |
203 |
Q |
| |
|
||||||||||||||| ||||||||||| | |||| |||||| ||| |||||| |||||||||| ||| || || |||||| ||| |||||||||||| |
|
|
| T |
211771 |
tttcaaatacgaagggaattcaaagttcaatgttgttatatacgatacaacttctgttgagatttcttatccattccaaactcggaggactaatggagaa |
211672 |
T |
|
| Q |
204 |
acaaa |
208 |
Q |
| |
|
|||| |
|
|
| T |
211671 |
gcaaa |
211667 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 104 - 208
Target Start/End: Complemental strand, 226214 - 226110
Alignment:
| Q |
104 |
tttcaaatacgaaggaaattcaaagtttagtgttattatatttgatgtaacttcggttgagatttgctattcactcaaaactccgagtactaatggagaa |
203 |
Q |
| |
|
||||||||| ||||| ||||||||||| | |||| |||||| ||| |||||| |||||||||| ||| || || |||||| ||| |||||||||||| |
|
|
| T |
226214 |
tttcaaatatgaagggaattcaaagttcaatgttgttatatacgatagaacttctgttgagatttcttatccattccaaactcggaggactaatggagaa |
226115 |
T |
|
| Q |
204 |
acaaa |
208 |
Q |
| |
|
|||| |
|
|
| T |
226114 |
ccaaa |
226110 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 95; Significance: 2e-46; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 37 - 251
Target Start/End: Complemental strand, 29838435 - 29838221
Alignment:
| Q |
37 |
ttttcttttacaacgaatggcaagagtttgcaaaatactattcgttaggatatggttgctacctatctttcaaatacgaaggaaattcaaagtttagtgt |
136 |
Q |
| |
|
||||||||| |||| ||||||||||||||| | |||| ||||| ||||||||||||||| | | ||||||||||| ||||| ||||||||||||||||| |
|
|
| T |
29838435 |
ttttcttttgcaacaaatggcaagagtttgtagaatattattctataggatatggttgcttcatttctttcaaatatgaagggaattcaaagtttagtgt |
29838336 |
T |
|
| Q |
137 |
tattatatttgatgtaacttcggttgagatttgctattcactcaaaactccgagtactaatggagaaacaaatacacaatgtcctactcctagaaaaagt |
236 |
Q |
| |
|
|||||||||||||| |||||| ||||| |||| |||| | || ||||||| ||||||||||||||| |||| ||| | | ||||| | |||||||||| |
|
|
| T |
29838335 |
tattatatttgatgcaacttctgttgaaatttcctatcctttcgaaactccaagtactaatggagaaccaaaaacaaattatcctagttctagaaaaagg |
29838236 |
T |
|
| Q |
237 |
tccagggttgaaaca |
251 |
Q |
| |
|
|||| |||||||||| |
|
|
| T |
29838235 |
tccaaggttgaaaca |
29838221 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 77; Significance: 1e-35; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 37 - 208
Target Start/End: Complemental strand, 3808531 - 3808359
Alignment:
| Q |
37 |
ttttcttttacaacgaatggcaagagtttgcaaaatactattcgttaggatatggttgctacctatctttcaaatacgaaggaaattc-aaagtttagtg |
135 |
Q |
| |
|
||||||||| |||| ||||||||||||| | ||||||| || ||||||||||||| ||||| |||||||| || ||||||||||| ||||||||||| |
|
|
| T |
3808531 |
ttttcttttgcaacaaatggcaagagttcatagaatactactcaataggatatggttggtacctttctttcaattatgaaggaaattccaaagtttagtg |
3808432 |
T |
|
| Q |
136 |
ttattatatttgatgtaacttcggttgagatttgctattcactcaaaactccgagtactaatggagaaacaaa |
208 |
Q |
| |
|
||||||||||||| |||||||| |||| |||||||||| | |||||||||| ||||||||| ||||| |||| |
|
|
| T |
3808431 |
ttattatatttgacgtaacttctgttgggatttgctatccgttcaaaactccaagtactaatagagaaccaaa |
3808359 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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