View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11479_low_7 (Length: 319)

Name: NF11479_low_7
Description: NF11479
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11479_low_7
NF11479_low_7
[»] chr6 (2 HSPs)
chr6 (156-301)||(32679640-32679785)
chr6 (182-229)||(32679630-32679676)
[»] chr2 (3 HSPs)
chr2 (218-283)||(28136025-28136090)
chr2 (19-109)||(28135839-28135930)
chr2 (111-191)||(28135955-28136035)
[»] chr3 (3 HSPs)
chr3 (193-301)||(2230502-2230609)
chr3 (111-190)||(2230576-2230655)
chr3 (19-87)||(2230704-2230772)
[»] chr8 (3 HSPs)
chr8 (19-109)||(44806913-44807003)
chr8 (246-301)||(44806740-44806795)
chr8 (124-191)||(44806806-44806873)


Alignment Details
Target: chr6 (Bit Score: 134; Significance: 1e-69; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 156 - 301
Target Start/End: Original strand, 32679640 - 32679785
Alignment:
Q  156 aggtttagaagtcaggtacaaccataaaggatgaaaaggtttagaagtcaggtacaacccacaaaggatgaaaaccaacaatacttgtttgttatctcaa 255  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||    
T  32679640 aggtttagaagtcaggtacaaccataaaggatgaaaaggtttagaagtcaggtacaacccataaaggatgaaaaccaacaatacttgtttgttatcttaa 32679739  T
Q  256 atatcatgtaaaacacatcataacagcttagctacatgaagaaaga 301  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||    
T  32679740 atatcatgtaaaacacatcctaacagcttagctacatgaagaaaga 32679785  T

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Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 182 - 229
Target Start/End: Original strand, 32679630 - 32679676
Alignment:
Q  182 aaggatgaaaaggtttagaagtcaggtacaacccacaaaggatgaaaa 229  Q
    ||||||||||||||||||||||||||||||| ||| ||||||||||||    
T  32679630 aaggatgaaaaggtttagaagtcaggtacaa-ccataaaggatgaaaa 32679676  T

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Target: chr2 (Bit Score: 58; Significance: 2e-24; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 218 - 283
Target Start/End: Original strand, 28136025 - 28136090
Alignment:
Q  218 aaaggatgaaaaccaacaatacttgtttgttatctcaaatatcatgtaaaacacatcataacagct 283  Q
    ||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  28136025 aaaggatgaaagccaacaatacttatttgttatctcaaatatcatgtaaaacacatcataacagct 28136090  T

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Target: chr2; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 19 - 109
Target Start/End: Original strand, 28135839 - 28135930
Alignment:
Q  19 ggcataggataatgaatcattcagctcgcccaagtaataaaagacctaagattaaggagcaaaacaaaatcagat-gccaaaacacaaacca 109  Q
    ||||||||||| ||| ||||||||||| |||||||||||||| ||||||||| ||||||| ||| ||||| |||| |  |||||||||||||    
T  28135839 ggcataggatagtgagtcattcagctcacccaagtaataaaatacctaagataaaggagcgaaaaaaaattagatagtaaaaacacaaacca 28135930  T

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Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 111 - 191
Target Start/End: Original strand, 28135955 - 28136035
Alignment:
Q  111 gaataataatatgtggatatgaaaaaacttaaggcctccggtgataggtttagaagtcaggtacaaccataaaggatgaaa 191  Q
    ||||||||||||  |||||||||||||| ||||| ||| |||||| |||||||||| | |||||||  | |||||||||||    
T  28135955 gaataataatatagggatatgaaaaaacataaggactctggtgattggtttagaagccgggtacaataaaaaaggatgaaa 28136035  T

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Target: chr3 (Bit Score: 57; Significance: 8e-24; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 193 - 301
Target Start/End: Complemental strand, 2230609 - 2230502
Alignment:
Q  193 ggtttagaagtcaggtacaacccacaaaggatgaaaaccaacaatacttgtttgttatctcaaatatcatgtaaaacacatcataacagcttagctacat 292  Q
    |||||||||| ||||||||| | | ||||||||||  || | |||| || |||| |||||||||||||||||||||||||||||||||||||||| ||||    
T  2230609 ggtttagaagccaggtacaatcaa-aaaggatgaaggccgaaaatatttatttgctatctcaaatatcatgtaaaacacatcataacagcttagccacat 2230511  T
Q  293 gaagaaaga 301  Q
    |||||||||    
T  2230510 gaagaaaga 2230502  T

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Target: chr3; HSP #2
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 111 - 190
Target Start/End: Complemental strand, 2230655 - 2230576
Alignment:
Q  111 gaataataatatgtggatatgaaaaaacttaaggcctccggtgataggtttagaagtcaggtacaaccataaaggatgaa 190  Q
    |||||||||||| ||||||| ||||||||||||||||| |||||| |||||||||| ||||||||| || ||||||||||    
T  2230655 gaataataatatatggatataaaaaaacttaaggcctctggtgattggtttagaagccaggtacaatcaaaaaggatgaa 2230576  T

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Target: chr3; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 19 - 87
Target Start/End: Complemental strand, 2230772 - 2230704
Alignment:
Q  19 ggcataggataatgaatcattcagctcgcccaagtaataaaagacctaagattaaggagcaaaacaaaa 87  Q
    ||||||||||| ||| |||||||||||||||||||||| ||||||||||||| ||||||| ||| ||||    
T  2230772 ggcataggatagtgagtcattcagctcgcccaagtaattaaagacctaagataaaggagcgaaaaaaaa 2230704  T

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Target: chr8 (Bit Score: 51; Significance: 3e-20; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 19 - 109
Target Start/End: Complemental strand, 44807003 - 44806913
Alignment:
Q  19 ggcataggataatgaatcattcagctcgcccaagtaataaaagacctaagattaaggagcaaaacaaaatcagatgccaaaacacaaacca 109  Q
    ||||||||||| ||| ||||||| |||||||||||||||||||||||||||| ||||||| ||  |||||||||| | |||| ||||||||    
T  44807003 ggcataggatagtgagtcattcaactcgcccaagtaataaaagacctaagataaaggagcgaagaaaaatcagatactaaaatacaaacca 44806913  T

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Target: chr8; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 246 - 301
Target Start/End: Complemental strand, 44806795 - 44806740
Alignment:
Q  246 gttatctcaaatatcatgtaaaacacatcataacagcttagctacatgaagaaaga 301  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||    
T  44806795 gttatctcaaatatcatgtaaaacacatcataacagcttagctacttgacgaaaga 44806740  T

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Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 124 - 191
Target Start/End: Complemental strand, 44806873 - 44806806
Alignment:
Q  124 tggatatgaaaaaacttaaggcctccggtgataggtttagaagtcaggtacaaccataaaggatgaaa 191  Q
    |||||||||||||||||||| |||| |||||| |||||||||| | ||||||| || |||| ||||||    
T  44806873 tggatatgaaaaaacttaagtcctctggtgattggtttagaagccgggtacaatcaaaaagaatgaaa 44806806  T

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