View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11479_low_8 (Length: 289)
Name: NF11479_low_8
Description: NF11479
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11479_low_8 |
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Alignment Details
Target: chr3 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 36 - 273
Target Start/End: Complemental strand, 42825050 - 42824813
Alignment:
| Q |
36 |
gaacatatgatatgtttggtttgtataggttatattggttggacacagtgcaggagggttgagtattactcaggtctgtcacaaatttgcaaataaggtt |
135 |
Q |
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| T |
42825050 |
gaacatatgatatgtttggtttgtataggttatattggttggacacagtgcaggagggttgagtattactcaggcctgtcacaaatttgcaaataaggtt |
42824951 |
T |
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| Q |
136 |
agtttagctgtgtatgtggcagcaacaatgctgaaatttggatactcaaccgatgaagatcttaaagatgtgagtccttttcgatataaattatgttctg |
235 |
Q |
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| T |
42824950 |
agtttagctgtgtatgtggcagcaacaatgctgaaatttggatactcaaccgatgaagatcttaaagatgtgagtccttttcaatataaattatgttctg |
42824851 |
T |
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| Q |
236 |
ttttcctttgtttgaattatttttagtacgttagaatt |
273 |
Q |
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| T |
42824850 |
ttttcctttgtttgaattatttttagtacgttagaatt |
42824813 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 50; Significance: 1e-19; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 61 - 210
Target Start/End: Original strand, 28795262 - 28795411
Alignment:
| Q |
61 |
taggttatattggttggacacagtgcaggagggttgagtattactcaggtctgtcacaaatttgcaaataaggttagtttagctgtgtatgtggcagcaa |
160 |
Q |
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| T |
28795262 |
taggtaatattggtgggacatagtgcaggagggttgagtattacccatgcttgtcacaaatttgccaagaaaatatgtttagcagtgtatgtggctgcaa |
28795361 |
T |
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| Q |
161 |
caatgctgaaatttggatactcaaccgatgaagatcttaaagatgtgagt |
210 |
Q |
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| T |
28795362 |
ctatgctcaaattgggattttgtacagatgaagatctaagagatgtgagt |
28795411 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 126 - 208
Target Start/End: Complemental strand, 31590641 - 31590561
Alignment:
| Q |
126 |
aaataaggttagtttagctgtgtatgtggcagcaacaatgctgaaatttggatactcaaccgatgaagatcttaaagatgtga |
208 |
Q |
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| T |
31590641 |
aaataaggttcatttagcagtgt--gtggcagcgactatgctgaagttaggatactcaaccgacaaagatcttaaagatgtga |
31590561 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 116 - 211
Target Start/End: Complemental strand, 4486755 - 4486660
Alignment:
| Q |
116 |
acaaatttgcaaataaggttagtttagctgtgtatgtggcagcaacaatgctgaaatttggatactcaaccgatgaagatcttaaagatgtgagtc |
211 |
Q |
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| T |
4486755 |
acaagtttgcaaataaggttcatgtagcagtgtgtgtggcagaaactctcccgaagttaggatactcaactgataaagatcttaaagatgggagtc |
4486660 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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