View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1147_high_12 (Length: 265)
Name: NF1147_high_12
Description: NF1147
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1147_high_12 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 197; Significance: 1e-107; HSPs: 8)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 26 - 222
Target Start/End: Complemental strand, 39677153 - 39676957
Alignment:
| Q |
26 |
atgaaggtccttgccatcattaacagcttccatcatggtcatacaatgagaactctcaacattttgagcaggatcttgacctgttgccaagtaaactgct |
125 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39677153 |
atgaaggtccttgccatcattaacagcttccatcatggtcatacaatgagaactctcaacattttgagcaggatcttgacctgttgccaagtaaactgct |
39677054 |
T |
|
| Q |
126 |
gaaacaatattactagcatgtgcattgaagccaccaagagcaccagccatggctgaaccagtaagatttttaagcatgttaagctcaaccaaagact |
222 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39677053 |
gaaacaatattactagcatgtgcattgaagccaccaagagcaccagccatggctgaaccagtaagatttttaagcatgttaagctcaaccaaagact |
39676957 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 27 - 222
Target Start/End: Complemental strand, 10047357 - 10047162
Alignment:
| Q |
27 |
tgaaggtccttgccatcattaacagcttccatcatggtcatacaatgagaactctcaacattttgagcaggatcttgacctgttgccaagtaaactgctg |
126 |
Q |
| |
|
|||||||| ||||||||||| ||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||| |||||||||| || | |
|
|
| T |
10047357 |
tgaaggtctttgccatcattcacagcttccatcatggtcatacattgagaactctcaacattctgagcaggatcttgacctgtagccaagtaaatagcag |
10047258 |
T |
|
| Q |
127 |
aaacaatattactagcatgtgcattgaagccaccaagagcaccagccatggctgaaccagtaagatttttaagcatgttaagctcaaccaaagact |
222 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||| |
|
|
| T |
10047257 |
aaacaatattactagcatgtgcattgaatccaccaagagcaccagccatggctgaaccagtaagattttttaacatgttaagctcaaccaaagact |
10047162 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 26 - 222
Target Start/End: Complemental strand, 10867610 - 10867414
Alignment:
| Q |
26 |
atgaaggtccttgccatcattaacagcttccatcatggtcatacaatgagaactctcaacattttgagcaggatcttgacctgttgccaagtaaactgct |
125 |
Q |
| |
|
|||||||||||| || ||||| || |||||||||||||||||||| |||||||| |||||||| |||||||||||||| ||||| |||||||||| ||| |
|
|
| T |
10867610 |
atgaaggtcctttccgtcattcacggcttccatcatggtcatacagtgagaactttcaacattctgagcaggatcttgtcctgtagccaagtaaattgca |
10867511 |
T |
|
| Q |
126 |
gaaacaatattactagcatgtgcattgaagccaccaagagcaccagccatggctgaaccagtaagatttttaagcatgttaagctcaaccaaagact |
222 |
Q |
| |
|
|||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||| ||||| ||||| ||||||||||||||||||||||||| |
|
|
| T |
10867510 |
gaaacaatattactagcatgtgcattaaagccgccaagagcaccagccatggctgaaccggtaaggttttttagcatgttaagctcaaccaaagact |
10867414 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 26 - 222
Target Start/End: Original strand, 10872702 - 10872898
Alignment:
| Q |
26 |
atgaaggtccttgccatcattaacagcttccatcatggtcatacaatgagaactctcaacattttgagcaggatcttgacctgttgccaagtaaactgct |
125 |
Q |
| |
|
|||||||||||| || ||||| || |||||||||||||||||||| |||||||| |||||||| |||||||||||||| ||||| |||||||||| ||| |
|
|
| T |
10872702 |
atgaaggtcctttccgtcattcacggcttccatcatggtcatacagtgagaactttcaacattctgagcaggatcttgtcctgtagccaagtaaattgca |
10872801 |
T |
|
| Q |
126 |
gaaacaatattactagcatgtgcattgaagccaccaagagcaccagccatggctgaaccagtaagatttttaagcatgttaagctcaaccaaagact |
222 |
Q |
| |
|
|||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||| ||||| ||||| ||||||||||||||||||||||||| |
|
|
| T |
10872802 |
gaaacaatattactagcatgtgcattaaagccgccaagagcaccagccatggctgaaccggtaaggttttttagcatgttaagctcaaccaaagact |
10872898 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 26 - 222
Target Start/End: Original strand, 10877773 - 10877969
Alignment:
| Q |
26 |
atgaaggtccttgccatcattaacagcttccatcatggtcatacaatgagaactctcaacattttgagcaggatcttgacctgttgccaagtaaactgct |
125 |
Q |
| |
|
|||||||||||| || ||||| || |||||||||||||||||||| |||||||| |||||||| |||||||||||||| ||||| |||||||||| ||| |
|
|
| T |
10877773 |
atgaaggtcctttccgtcattcacggcttccatcatggtcatacagtgagaactttcaacattctgagcaggatcttgtcctgtagccaagtaaattgca |
10877872 |
T |
|
| Q |
126 |
gaaacaatattactagcatgtgcattgaagccaccaagagcaccagccatggctgaaccagtaagatttttaagcatgttaagctcaaccaaagact |
222 |
Q |
| |
|
|||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||| ||||| ||||| ||||||||||||||||||||||||| |
|
|
| T |
10877873 |
gaaacaatattactagcatgtgcattaaagccgccaagagcaccagccatggctgaaccggtaaggttttttagcatgttaagctcaaccaaagact |
10877969 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 26 - 222
Target Start/End: Original strand, 10882844 - 10883040
Alignment:
| Q |
26 |
atgaaggtccttgccatcattaacagcttccatcatggtcatacaatgagaactctcaacattttgagcaggatcttgacctgttgccaagtaaactgct |
125 |
Q |
| |
|
|||||||||||| || ||||| || |||||||||||||||||||| |||||||| |||||||| |||||||||||||| ||||| |||||||||| ||| |
|
|
| T |
10882844 |
atgaaggtcctttccgtcattcacggcttccatcatggtcatacagtgagaactttcaacattctgagcaggatcttgtcctgtagccaagtaaattgca |
10882943 |
T |
|
| Q |
126 |
gaaacaatattactagcatgtgcattgaagccaccaagagcaccagccatggctgaaccagtaagatttttaagcatgttaagctcaaccaaagact |
222 |
Q |
| |
|
|||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||| ||||| ||||| ||||||||||||||||||||||||| |
|
|
| T |
10882944 |
gaaacaatattactagcatgtgcattaaagccgccaagagcaccagccatggctgaaccggtaaggttttttagcatgttaagctcaaccaaagact |
10883040 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 26 - 222
Target Start/End: Original strand, 10886759 - 10886955
Alignment:
| Q |
26 |
atgaaggtccttgccatcattaacagcttccatcatggtcatacaatgagaactctcaacattttgagcaggatcttgacctgttgccaagtaaactgct |
125 |
Q |
| |
|
|||||||||||| || ||||| || |||||||||||||||||||| |||||||| |||||||| |||||||||||||| ||||| |||||||||| ||| |
|
|
| T |
10886759 |
atgaaggtcctttccgtcattcacggcttccatcatggtcatacagtgagaactttcaacattctgagcaggatcttgtcctgtagccaagtaaattgca |
10886858 |
T |
|
| Q |
126 |
gaaacaatattactagcatgtgcattgaagccaccaagagcaccagccatggctgaaccagtaagatttttaagcatgttaagctcaaccaaagact |
222 |
Q |
| |
|
||||||||||||||||||||||| || ||||| ||||| |||||||||||||||||||| ||||| ||||| ||||||||||||||||||||||||| |
|
|
| T |
10886859 |
gaaacaatattactagcatgtgcgttaaagccgccaagtgcaccagccatggctgaaccggtaaggttttttagcatgttaagctcaaccaaagact |
10886955 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 26 - 211
Target Start/End: Complemental strand, 37950411 - 37950226
Alignment:
| Q |
26 |
atgaaggtccttgccatcattaacagcttccatcatggtcatacaatgagaactctcaacattttgagcaggatcttgacctgttgccaagtaaactgct |
125 |
Q |
| |
|
||||||||| | |||||||| || ||||||||||| || || ||||| ||||| |||||||||||||| ||||||||||| || || | ||| || |
|
|
| T |
37950411 |
atgaaggtctctcccatcatttacggcttccatcattgttatgcaatgggaactttcaacattttgagctggatcttgaccagtggctataaaaatggca |
37950312 |
T |
|
| Q |
126 |
gaaacaatattactagcatgtgcattgaagccaccaagagcaccagccatggctgaaccagtaagatttttaagcatgttaagctc |
211 |
Q |
| |
|
|||||||| ||||||||||| |||||||| |||||||||| ||||| | || ||||||| ||| ||||| |||||||| ||||| |
|
|
| T |
37950311 |
gaaacaatgttactagcatgggcattgaatccaccaagagtgccagcaacagcagaaccagcaaggtttttgagcatgtttagctc |
37950226 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 102; Significance: 1e-50; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 27 - 216
Target Start/End: Original strand, 30707993 - 30708182
Alignment:
| Q |
27 |
tgaaggtccttgccatcattaacagcttccatcatggtcatacaatgagaactctcaacattttgagcaggatcttgacctgttgccaagtaaactgctg |
126 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||| ||||||||||||||||| ||||| ||||||||||||||||| || || | ||| || || | |
|
|
| T |
30707993 |
tgaaggtccttgccatcattcacagcttccatcatggtaatacaatgagaactctccacattctgagcaggatcttgaccagtggctatgtagacagcag |
30708092 |
T |
|
| Q |
127 |
aaacaatattactagcatgtgcattgaagccaccaagagcaccagccatggctgaaccagtaagatttttaagcatgttaagctcaacca |
216 |
Q |
| |
|
| ||||| || |||||||| |||||||| ||||||||||||||||| | |||||| ||||| || || |||||||||||||||||||||| |
|
|
| T |
30708093 |
agacaatgttgctagcatgagcattgaacccaccaagagcaccagcaagggctgatccagttaggttcttaagcatgttaagctcaacca |
30708182 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University